Wall clock time and date at job start Mon Mar 30 2020 02:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47152 * 239.99846 * 3 2 1 5 5 H 1.48495 * 109.47327 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47303 * 120.00116 * 3 2 1 7 7 C 1.37878 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00301 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00110 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.42893 * 113.99872 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47196 * 180.02562 * 11 10 9 13 13 N 1.46507 * 109.47241 * 65.00166 * 12 11 10 14 14 C 1.35763 * 119.62574 * 90.00014 * 13 12 11 15 15 C 1.35346 * 120.69997 * 180.27933 * 14 13 12 16 16 C 1.40202 * 119.94860 * 359.43664 * 15 14 13 17 17 C 1.36395 * 119.26120 * 0.57668 * 16 15 14 18 18 C 1.34664 * 119.61981 * 270.02413 * 13 12 11 19 19 O 1.22055 * 119.98569 * 359.97438 * 18 13 12 20 20 H 0.96996 * 119.99734 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47046 * 59.99544 * 9 7 2 22 22 H 1.08999 * 109.47173 * 299.99936 * 9 7 2 23 23 H 1.08995 * 109.47467 * 59.99958 * 11 10 9 24 24 H 1.09003 * 109.47454 * 299.99932 * 11 10 9 25 25 H 1.08991 * 109.47264 * 305.00242 * 12 11 10 26 26 H 1.09001 * 109.47142 * 184.99878 * 12 11 10 27 27 H 1.08002 * 119.64669 * 359.97438 * 14 13 12 28 28 H 1.07996 * 120.02410 * 179.69320 * 15 14 13 29 29 H 1.08002 * 120.36615 * 180.31976 * 16 15 14 30 30 H 1.08002 * 120.34395 * 179.74309 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6479 -5.9563 0.0017 13 7 3.4059 -5.8875 1.2536 14 6 2.9974 -6.6128 2.3261 15 6 3.6780 -6.5613 3.4949 16 6 4.8245 -5.7615 3.6025 17 6 5.2330 -5.0332 2.5240 18 6 4.4995 -5.1052 1.3274 19 8 4.8541 -4.4591 0.3546 20 1 -0.4849 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5568 0.8903 23 1 0.9446 -4.9827 -0.8886 24 1 0.9451 -4.9822 0.8914 25 1 3.3215 -5.7961 -0.8400 26 1 2.1819 -6.9376 -0.0874 27 1 2.1173 -7.2338 2.2473 28 1 3.3406 -7.1390 4.3426 29 1 5.3757 -5.7194 4.5303 30 1 6.1113 -4.4081 2.5888 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385229044.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:48 Heat of formation + Delta-G solvation = -74.197325 kcal Electronic energy + Delta-G solvation = -15028.992623 eV Core-core repulsion = 12402.995842 eV Total energy + Delta-G solvation = -2625.996782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.13825 -38.64643 -37.77576 -35.69769 -34.83901 -31.19526 -30.52851 -29.02146 -25.34086 -24.66158 -24.15124 -22.76361 -18.79288 -18.45169 -18.19380 -17.43744 -17.11857 -16.82943 -16.32324 -16.26349 -15.34220 -15.01166 -14.94848 -14.03640 -13.75600 -13.42137 -13.06323 -13.02500 -12.84671 -12.74791 -12.51810 -12.42231 -12.05139 -11.34914 -10.98740 -10.90567 -10.81392 -10.27571 -8.81489 -8.38348 -6.50083 0.04655 1.09987 1.32707 1.37930 1.46763 1.81608 2.30159 2.81856 2.94408 3.14691 3.86753 3.88651 4.08480 4.13151 4.21313 4.31140 4.48242 4.52070 4.65241 4.71250 4.83948 5.10440 5.19460 5.29203 5.47310 5.48818 5.81482 5.91342 6.26033 6.48831 6.78837 7.21943 7.22841 8.73658 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.033874 B = 0.007179 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.404470 B = 3899.323994 C = 4240.587986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.978 3.022 4 H -0.269 1.269 5 H -0.264 1.264 6 H -0.269 1.269 7 C -0.552 4.552 8 H 0.046 0.954 9 C 0.212 3.788 10 O -0.404 6.404 11 C 0.030 3.970 12 C 0.098 3.902 13 N -0.494 5.494 14 C 0.131 3.869 15 C -0.240 4.240 16 C 0.003 3.997 17 C -0.292 4.292 18 C 0.491 3.509 19 O -0.599 6.599 20 H 0.273 0.727 21 H -0.011 1.011 22 H -0.014 1.014 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.164 0.836 27 H 0.209 0.791 28 H 0.186 0.814 29 H 0.166 0.834 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 -17.387 8.230 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.801 3.199 4 H -0.194 1.194 5 H -0.189 1.189 6 H -0.194 1.194 7 C -0.590 4.590 8 H 0.064 0.936 9 C 0.137 3.863 10 O -0.323 6.323 11 C -0.047 4.047 12 C -0.023 4.023 13 N -0.204 5.204 14 C 0.004 3.996 15 C -0.262 4.262 16 C -0.018 4.018 17 C -0.314 4.314 18 C 0.295 3.705 19 O -0.485 6.485 20 H 0.082 0.918 21 H 0.007 0.993 22 H 0.004 0.996 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.182 0.818 27 H 0.225 0.775 28 H 0.203 0.797 29 H 0.183 0.817 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.498 -16.842 7.556 18.788 hybrid contribution 0.027 1.124 -0.282 1.159 sum 3.526 -15.717 7.274 17.674 Atomic orbital electron populations 1.70033 1.07413 1.28805 1.50268 1.25884 0.96038 1.03064 0.93737 0.85318 0.78297 0.77089 0.79217 1.19432 1.18852 1.19357 1.21306 0.93526 0.91505 1.52648 0.93607 1.19768 0.88396 0.84693 0.93399 1.88053 1.34864 1.14248 1.95172 1.23070 0.95639 0.84646 1.01355 1.22234 0.93698 1.00509 0.85831 1.45573 1.23967 1.37080 1.13742 1.22870 0.98955 0.92015 0.85728 1.21167 0.98882 1.07184 0.98996 1.21836 0.93737 0.88647 0.97621 1.22097 1.05408 1.09682 0.94206 1.17665 0.81683 0.80433 0.90760 1.90950 1.70436 1.46209 1.40869 0.91809 0.99335 0.99591 0.91271 0.92729 0.90333 0.81831 0.77478 0.79675 0.81664 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 2 C 0.01 0.71 5.46 84.65 0.46 1.17 16 3 Si 0.98 47.50 29.54 68.60 2.03 49.53 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.55 -35.98 9.43 25.60 0.24 -35.74 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.21 12.74 5.69 71.24 0.41 13.14 16 10 O -0.40 -21.64 9.07 -140.73 -1.28 -22.92 16 11 C 0.03 1.10 6.28 71.98 0.45 1.56 16 12 C 0.10 2.75 5.79 86.38 0.50 3.25 16 13 N -0.49 -14.75 2.57 -650.97 -1.67 -16.42 16 14 C 0.13 2.39 10.28 83.42 0.86 3.24 16 15 C -0.24 -3.85 10.01 22.08 0.22 -3.63 16 16 C 0.00 0.07 10.10 22.32 0.23 0.29 16 17 C -0.29 -9.43 9.99 22.40 0.22 -9.20 16 18 C 0.49 19.63 7.02 84.82 0.60 20.23 16 19 O -0.60 -31.15 15.82 2.76 0.04 -31.11 16 20 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 21 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 22 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 23 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.08 2.66 7.39 -2.39 -0.02 2.64 16 26 H 0.16 2.30 8.01 -2.39 -0.02 2.28 16 27 H 0.21 1.53 8.04 -2.91 -0.02 1.51 16 28 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 29 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 30 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -89.22 267.97 4.71 -84.51 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: 1.12 Total: -0.67 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 4.19 Total: -5.69 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.39 Total: -73.66 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -1.23 Total: -54.02 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -89.22 4.71 -84.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385229044.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.317 kcal (2) G-P(sol) polarization free energy of solvation -89.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds