Wall clock time and date at job start Mon Mar 30 2020 03:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00343 * 2 1 4 4 H 1.48502 * 109.47151 * 269.99535 * 3 2 1 5 5 H 1.48496 * 109.46951 * 29.99632 * 3 2 1 6 6 H 1.48496 * 109.46924 * 149.99649 * 3 2 1 7 7 C 1.37878 * 119.99447 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00431 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99792 * 180.02562 * 7 2 1 10 10 O 1.42896 * 109.47104 * 179.97438 * 9 7 2 11 11 C 1.42906 * 113.99869 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46797 * 180.02562 * 11 10 9 13 13 N 1.46497 * 109.47040 * 180.02562 * 12 11 10 14 14 C 1.36498 * 124.77912 * 89.97303 * 13 12 11 15 15 C 1.34358 * 109.16273 * 180.02562 * 14 13 12 16 16 C 1.46903 * 106.35668 * 359.97438 * 15 14 13 17 17 C 1.46456 * 127.05980 * 180.02562 * 16 15 14 18 18 O 1.21336 * 120.00071 * 0.03225 * 17 16 15 19 19 C 1.34497 * 124.77837 * 270.29033 * 13 12 11 20 20 H 0.97004 * 119.99450 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.46923 * 60.00446 * 9 7 2 22 22 H 1.08998 * 109.47404 * 300.00129 * 9 7 2 23 23 H 1.08995 * 109.46803 * 60.00561 * 11 10 9 24 24 H 1.09000 * 109.46953 * 299.99841 * 11 10 9 25 25 H 1.08997 * 109.47668 * 59.99760 * 12 11 10 26 26 H 1.09004 * 109.47320 * 299.99614 * 12 11 10 27 27 H 1.07992 * 125.41774 * 359.97438 * 14 13 12 28 28 H 1.08001 * 126.81862 * 180.02562 * 15 14 13 29 29 H 1.08000 * 119.99407 * 180.02562 * 17 16 15 30 30 H 1.08005 * 125.91392 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 8 3.9877 -2.5415 0.0022 11 6 5.4123 -2.6544 0.0034 12 6 5.8067 -4.1327 0.0039 13 7 7.2671 -4.2485 0.0057 14 6 8.0418 -4.3095 1.1278 15 6 9.3323 -4.4114 0.7678 16 6 9.3530 -4.4138 -0.7011 17 6 10.5304 -4.5075 -1.5670 18 8 11.6375 -4.5956 -1.0783 19 6 8.0337 -4.3035 -1.0980 20 1 -0.4849 0.8401 -0.0004 21 1 3.8745 -0.6802 0.8912 22 1 3.8752 -0.6806 -0.8888 23 1 5.8143 -2.1705 0.8935 24 1 5.8158 -2.1713 -0.8865 25 1 5.4046 -4.6163 -0.8863 26 1 5.4032 -4.6161 0.8936 27 1 7.6759 -4.2798 2.1434 28 1 10.1848 -4.4790 1.4273 29 1 10.4131 -4.4983 -2.6406 30 1 7.6794 -4.2697 -2.1177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385818218.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:50 Heat of formation + Delta-G solvation = -56.012516 kcal Electronic energy + Delta-G solvation = -14103.636243 eV Core-core repulsion = 11478.428014 eV Total energy + Delta-G solvation = -2625.208229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.13022 -39.42790 -38.78192 -35.07033 -34.17072 -30.76547 -30.39109 -28.93378 -25.25633 -24.02149 -23.63820 -21.01228 -20.65201 -19.13312 -18.42147 -17.26893 -17.00382 -16.65615 -16.44580 -15.80532 -15.49955 -14.97226 -14.72608 -14.61442 -14.30221 -14.02886 -13.79087 -13.06604 -12.99838 -12.86164 -12.42099 -12.34787 -11.86696 -11.44573 -10.96775 -10.65011 -10.50693 -9.66099 -9.27058 -8.40196 -6.49007 0.48508 1.32995 1.35070 1.41267 1.45562 1.74332 2.26675 2.44936 2.92763 3.09225 3.67228 3.73445 3.97313 4.07675 4.20453 4.28219 4.32140 4.48940 4.59552 4.73708 4.79271 4.93131 5.00351 5.22094 5.38066 5.79418 5.84761 6.07720 6.25335 6.53465 6.62412 6.78584 7.15341 8.76556 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.054611 B = 0.004447 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.593842 B = 6294.930648 C = 6514.787068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.549 4.549 8 H 0.035 0.965 9 C 0.182 3.818 10 O -0.400 6.400 11 C 0.041 3.959 12 C 0.111 3.889 13 N -0.432 5.432 14 C -0.026 4.026 15 C -0.171 4.171 16 C -0.321 4.321 17 C 0.417 3.583 18 O -0.534 6.534 19 C 0.086 3.914 20 H 0.274 0.726 21 H 0.013 0.987 22 H 0.016 0.984 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.119 0.881 26 H 0.108 0.892 27 H 0.182 0.818 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.298 -6.407 -2.591 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.587 4.587 8 H 0.053 0.947 9 C 0.106 3.894 10 O -0.319 6.319 11 C -0.037 4.037 12 C -0.011 4.011 13 N -0.107 5.107 14 C -0.152 4.152 15 C -0.194 4.194 16 C -0.329 4.329 17 C 0.281 3.719 18 O -0.413 6.413 19 C -0.051 4.051 20 H 0.083 0.917 21 H 0.030 0.970 22 H 0.033 0.967 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.138 0.862 26 H 0.127 0.873 27 H 0.199 0.801 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 16.214 -6.482 -2.279 17.610 hybrid contribution -0.184 0.880 0.292 0.945 sum 16.031 -5.601 -1.987 17.097 Atomic orbital electron populations 1.70020 1.08243 1.28869 1.50747 1.25799 0.95752 1.03314 0.93424 0.85650 0.79389 0.77714 0.79864 1.18240 1.19979 1.17035 1.21149 0.90819 0.94030 1.52684 0.94657 1.20354 0.93333 0.80331 0.95392 1.87792 1.19879 1.28846 1.95353 1.22810 0.82615 0.97116 1.01185 1.21727 0.76122 0.95785 1.07430 1.43822 1.06868 1.53599 1.06444 1.22104 0.90475 1.10218 0.92363 1.22227 0.96140 1.06534 0.94533 1.22068 0.95094 1.20761 0.94936 1.23652 0.84882 0.67692 0.95649 1.90498 1.30026 1.39805 1.80957 1.23028 0.89240 0.99497 0.93346 0.91710 0.96972 0.96662 0.93339 0.92401 0.86244 0.87336 0.80124 0.84301 0.83932 0.77071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.24 13.96 21.45 0.30 -56.94 16 2 C 0.02 0.89 5.47 84.66 0.46 1.35 16 3 Si 0.95 41.46 27.47 68.60 1.88 43.34 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.25 -9.88 6.54 99.48 0.65 -9.23 16 7 C -0.55 -31.78 9.99 25.60 0.26 -31.53 16 8 H 0.04 2.30 8.06 -2.91 -0.02 2.27 16 9 C 0.18 8.44 4.76 71.24 0.34 8.78 16 10 O -0.40 -16.31 10.33 -148.98 -1.54 -17.85 16 11 C 0.04 1.13 6.26 71.98 0.45 1.58 16 12 C 0.11 2.23 6.37 86.38 0.55 2.78 16 13 N -0.43 -8.35 2.68 -523.33 -1.40 -9.75 16 14 C -0.03 -0.54 11.31 83.08 0.94 0.40 16 15 C -0.17 -3.97 10.96 23.65 0.26 -3.71 16 16 C -0.32 -6.71 6.32 -18.87 -0.12 -6.83 16 17 C 0.42 8.21 11.69 69.96 0.82 9.03 16 18 O -0.53 -15.64 17.79 -3.20 -0.06 -15.69 16 19 C 0.09 1.44 11.38 84.28 0.96 2.39 16 20 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 21 H 0.01 0.56 7.20 -2.38 -0.02 0.55 16 22 H 0.02 0.68 7.57 -2.39 -0.02 0.66 16 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.12 2.06 8.13 -2.39 -0.02 2.04 16 26 H 0.11 2.10 8.13 -2.38 -0.02 2.08 16 27 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 28 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 29 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 30 H 0.21 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -73.65 273.40 5.16 -68.49 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.06 Total: 4.16 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 4.92 Total: -15.75 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -1.10 Total: -66.69 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.60 Total: -33.55 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.88 Total: 43.34 kcal Total: -73.65 5.16 -68.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385818218.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.475 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds