Wall clock time and date at job start Mon Mar 30 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99679 * 2 1 4 4 H 1.48493 * 109.47393 * 239.99876 * 3 2 1 5 5 H 1.48493 * 109.47048 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46835 * 120.00170 * 3 2 1 7 7 C 1.37876 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99852 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99896 * 359.97438 * 7 2 1 10 10 C 1.53515 * 114.16635 * 180.02562 * 9 7 2 11 11 N 1.47486 * 87.93048 * 220.32955 * 10 9 7 12 12 C 1.38532 * 110.99826 * 138.70563 * 11 10 9 13 13 N 1.32453 * 119.19109 * 359.72897 * 12 11 10 14 14 C 1.32297 * 120.76342 * 179.75994 * 13 12 11 15 15 C 1.38780 * 119.17349 * 0.50392 * 14 13 12 16 16 F 1.35096 * 120.75154 * 179.72532 * 15 14 13 17 17 C 1.38791 * 118.50615 * 359.75183 * 15 14 13 18 18 N 1.32301 * 119.16451 * 359.97438 * 17 15 14 19 19 C 1.47480 * 87.83684 * 27.00978 * 11 10 9 20 20 H 0.97002 * 120.00886 * 359.97438 * 1 2 3 21 21 H 1.08994 * 113.38360 * 313.07869 * 9 7 2 22 22 H 1.09005 * 113.47774 * 105.56404 * 10 9 7 23 23 H 1.08997 * 113.53532 * 335.10559 * 10 9 7 24 24 H 1.08006 * 120.41657 * 180.27349 * 14 13 12 25 25 H 1.07992 * 120.41687 * 180.02562 * 17 15 14 26 26 H 1.09005 * 113.47310 * 87.75367 * 19 11 10 27 27 H 1.08990 * 113.48150 * 218.22188 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.1498 -3.7437 -0.0005 11 7 1.2077 -4.3583 -0.9544 12 6 1.8852 -5.0448 -1.9488 13 7 3.2095 -5.0641 -1.9332 14 6 3.8879 -5.7138 -2.8647 15 6 3.1949 -6.3710 -3.8717 16 9 3.8556 -7.0396 -4.8420 17 6 1.8078 -6.3254 -3.8598 18 7 1.1928 -5.6615 -2.8947 19 6 0.8555 -2.9966 -1.3979 20 1 -0.4851 0.8400 0.0004 21 1 0.4433 -2.5323 0.7305 22 1 2.1865 -4.2528 0.9626 23 1 3.1395 -3.5659 -0.4212 24 1 4.9677 -5.7296 -2.8440 25 1 1.2377 -6.8262 -4.6281 26 1 1.4996 -2.6184 -2.1919 27 1 -0.2045 -2.8725 -1.6191 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596433857.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:19 Heat of formation + Delta-G solvation = 58.368681 kcal Electronic energy + Delta-G solvation = -14602.343774 eV Core-core repulsion = 11890.927932 eV Total energy + Delta-G solvation = -2711.415842 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 223.082 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.01441 -41.22343 -38.67443 -33.80597 -32.95139 -31.28672 -28.01374 -25.57915 -24.83513 -24.27972 -22.34592 -19.01787 -18.10323 -17.74560 -17.37674 -16.19076 -15.99765 -14.96562 -14.64739 -14.48190 -14.23339 -13.85728 -13.18619 -12.74372 -12.17086 -11.93255 -11.26288 -11.10313 -10.97938 -10.93795 -10.59033 -10.11362 -9.72740 -9.31225 -9.20120 -8.93185 -8.53970 -8.16604 -6.13508 -4.18775 0.77493 0.99113 3.27266 3.32572 3.34614 3.57042 3.76441 3.87069 4.13589 4.35927 4.61345 4.72968 5.14555 5.19804 5.50803 5.89440 6.06851 6.23007 6.29611 6.53680 6.61293 6.73426 6.89572 6.94662 7.59253 7.72148 7.86554 8.19516 8.24904 8.84850 9.46913 10.95981 Molecular weight = 223.08amu Principal moments of inertia in cm(-1) A = 0.047894 B = 0.006554 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.487973 B = 4271.261049 C = 4476.717000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.044 3.956 10 C 0.008 3.992 11 N -0.428 5.428 12 C 0.471 3.529 13 N -0.518 5.518 14 C 0.147 3.853 15 C -0.051 4.051 16 F -0.129 7.129 17 C 0.145 3.855 18 N -0.494 5.494 19 C 0.031 3.969 20 H 0.264 0.736 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.176 0.824 25 H 0.177 0.823 26 H 0.059 0.941 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.452 -9.737 -6.468 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.024 3.976 10 C -0.120 4.120 11 N -0.149 5.149 12 C 0.117 3.883 13 N -0.236 5.236 14 C -0.023 4.023 15 C -0.076 4.076 16 F -0.107 7.107 17 C -0.025 4.025 18 N -0.210 5.210 19 C -0.095 4.095 20 H 0.074 0.926 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.110 0.890 24 H 0.193 0.807 25 H 0.194 0.806 26 H 0.078 0.922 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.247 -9.572 -5.522 11.838 hybrid contribution 1.574 0.515 -1.341 2.131 sum 5.821 -9.057 -6.863 12.767 Atomic orbital electron populations 1.69945 1.06036 1.27172 1.48944 1.25037 0.94860 0.99339 0.94319 0.86616 0.79617 0.82771 0.78789 1.20189 1.21193 1.19992 1.20936 0.92912 0.89745 1.51898 0.92011 1.20200 0.94494 0.91318 0.91550 1.24214 0.97237 0.96029 0.94517 1.66165 1.26549 1.15165 1.07056 1.22466 0.84977 0.91299 0.89527 1.68635 1.09434 1.19181 1.26380 1.23306 1.01551 0.89643 0.87792 1.19378 0.93055 1.03036 0.92143 1.91501 1.80608 1.78228 1.60413 1.23337 0.90042 0.93382 0.95784 1.68223 1.40182 1.09554 1.03040 1.24252 1.01376 0.81116 1.02720 0.92596 0.91054 0.91156 0.89025 0.80715 0.80562 0.92211 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.79 13.26 55.43 0.74 -24.05 15 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 15 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 15 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.15 15 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.52 -13.66 8.82 -34.44 -0.30 -13.96 15 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 15 9 C 0.04 1.07 3.77 -91.24 -0.34 0.73 15 10 C 0.01 0.17 6.94 -7.53 -0.05 0.12 15 11 N -0.43 -9.16 6.51 -184.85 -1.20 -10.36 15 12 C 0.47 9.19 6.78 -322.72 -2.19 7.00 15 13 N -0.52 -9.22 8.20 -13.87 -0.11 -9.33 15 14 C 0.15 2.04 11.29 -17.15 -0.19 1.84 15 15 C -0.05 -0.66 7.38 -39.18 -0.29 -0.95 15 16 F -0.13 -1.53 17.30 2.25 0.04 -1.49 15 17 C 0.14 1.99 11.30 -17.15 -0.19 1.79 15 18 N -0.49 -8.84 10.47 -13.87 -0.15 -8.99 15 19 C 0.03 0.72 7.23 -7.54 -0.05 0.67 15 20 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 21 H 0.07 1.88 8.11 -51.93 -0.42 1.45 15 22 H 0.07 1.40 8.14 -51.93 -0.42 0.98 15 23 H 0.09 1.96 6.58 -51.93 -0.34 1.62 15 24 H 0.18 1.78 8.06 -52.48 -0.42 1.36 15 25 H 0.18 1.74 8.06 -52.49 -0.42 1.31 15 26 H 0.06 1.41 7.85 -51.93 -0.41 1.00 15 27 H 0.08 1.86 8.14 -51.93 -0.42 1.43 15 LS Contribution 246.62 15.07 3.72 3.72 Total: -1.00 -28.68 246.62 -8.12 -36.79 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -2.41 Total: -0.82 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -3.72 Total: -1.04 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.73 Total: -52.73 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.68 -8.12 -36.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596433857.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.163 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds