Wall clock time and date at job start Mon Mar 30 2020 02:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48507 * 109.47027 * 239.99549 * 3 2 1 5 5 H 1.48504 * 109.47302 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47210 * 120.00035 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47925 * 85.99684 * 138.00415 * 10 9 7 12 12 C 1.34780 * 134.49772 * 155.35643 * 11 10 9 13 13 O 1.21284 * 119.99485 * 179.97438 * 12 11 10 14 14 C 1.50693 * 120.00205 * 0.02562 * 12 11 10 15 15 C 1.53848 * 113.65740 * 279.00026 * 14 12 11 16 16 C 1.51777 * 86.68505 * 220.76393 * 15 14 12 17 17 O 1.20757 * 135.74361 * 205.15776 * 16 15 14 18 18 C 1.51572 * 88.47074 * 25.07637 * 16 15 14 19 19 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 20 20 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 21 21 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 22 22 H 1.09006 * 113.76402 * 252.36573 * 10 9 7 23 23 H 1.08997 * 113.76968 * 23.75198 * 10 9 7 24 24 H 1.09001 * 112.88510 * 50.32733 * 14 12 11 25 25 H 1.08998 * 113.66290 * 335.19399 * 15 14 12 26 26 H 1.08992 * 113.66524 * 106.26424 * 15 14 12 27 27 H 1.09000 * 113.66461 * 220.45807 * 18 16 15 28 28 H 1.08999 * 113.75455 * 89.40381 * 18 16 15 29 29 H 1.09003 * 113.77049 * 270.34039 * 19 11 10 30 30 H 1.08993 * 113.77081 * 138.93800 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 1.1904 -4.2911 -1.0121 12 6 0.8406 -5.5354 -1.3942 13 8 1.3838 -6.4981 -0.8953 14 6 -0.2246 -5.7303 -2.4422 15 6 -1.6578 -5.6235 -1.8929 16 6 -1.9956 -6.7988 -2.7920 17 8 -2.9942 -7.2232 -3.3221 18 6 -0.5370 -7.2073 -2.7377 19 6 2.1608 -3.7402 -0.0462 20 1 -0.4849 0.8401 -0.0004 21 1 0.4833 -2.5466 0.7730 22 1 -0.3213 -2.8307 -1.5255 23 1 1.3285 -2.4988 -2.2141 24 1 -0.0535 -5.1318 -3.3370 25 1 -1.7367 -5.8493 -0.8295 26 1 -2.1648 -4.6994 -2.1701 27 1 -0.1442 -7.5549 -3.6932 28 1 -0.2994 -7.8785 -1.9124 29 1 3.1449 -3.5476 -0.4734 30 1 2.2040 -4.2889 0.8945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617896135.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:39 Heat of formation + Delta-G solvation = -16.909544 kcal Electronic energy + Delta-G solvation = -14854.642626 eV Core-core repulsion = 12231.130029 eV Total energy + Delta-G solvation = -2623.512597 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.42984 -38.98082 -37.25093 -35.61316 -32.72316 -29.41932 -26.20908 -25.96779 -25.17191 -23.92023 -20.31261 -19.05796 -18.25964 -17.08841 -16.51400 -16.00059 -15.73540 -15.11310 -14.75717 -14.47030 -13.98304 -13.47135 -12.93096 -12.66199 -12.24629 -12.01774 -11.65888 -11.43277 -11.28076 -11.18894 -10.99578 -10.83146 -10.47639 -9.71117 -9.48544 -9.35171 -9.01638 -8.64033 -7.94747 -6.23389 -4.29185 1.77412 2.97796 3.21917 3.27857 3.29467 3.47917 3.79068 4.29213 4.35978 4.68043 4.86706 5.06245 5.10044 5.22478 5.47914 5.59557 5.74287 5.96216 6.01965 6.13265 6.21714 6.32464 6.50793 6.57717 6.73948 7.37409 7.48754 7.74074 8.10454 8.40838 8.64229 8.73944 9.38086 10.86209 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.045639 B = 0.006229 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.366940 B = 4493.797480 C = 4943.029617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.034 3.966 10 C 0.104 3.896 11 N -0.636 5.636 12 C 0.537 3.463 13 O -0.564 6.564 14 C -0.122 4.122 15 C -0.174 4.174 16 C 0.362 3.638 17 O -0.430 6.430 18 C -0.168 4.168 19 C 0.102 3.898 20 H 0.265 0.735 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.117 0.883 25 H 0.122 0.878 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.130 0.870 29 H 0.075 0.925 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 -6.631 -4.196 7.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.081 0.919 9 C 0.015 3.985 10 C -0.018 4.018 11 N -0.369 5.369 12 C 0.326 3.674 13 O -0.445 6.445 14 C -0.143 4.143 15 C -0.212 4.212 16 C 0.236 3.764 17 O -0.302 6.302 18 C -0.206 4.206 19 C -0.019 4.019 20 H 0.075 0.925 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.094 0.906 24 H 0.135 0.865 25 H 0.140 0.860 26 H 0.121 0.879 27 H 0.114 0.886 28 H 0.148 0.852 29 H 0.093 0.907 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.569 -7.413 -4.283 8.704 hybrid contribution 0.559 1.123 -0.134 1.261 sum -1.010 -6.290 -4.418 7.753 Atomic orbital electron populations 1.69930 1.06044 1.27297 1.49073 1.25013 0.94874 0.99371 0.94251 0.86598 0.79606 0.82653 0.78841 1.20090 1.21214 1.20046 1.20933 0.93037 0.89698 1.52281 0.91916 1.20490 0.94131 0.91405 0.92511 1.23813 0.99500 0.76285 1.02198 1.50554 1.39964 1.04875 1.41513 1.19695 0.83252 0.82088 0.82359 1.90636 1.56622 1.39734 1.57514 1.22285 0.94296 0.98251 0.99473 1.23992 0.94346 1.00523 1.02356 1.25737 0.88955 0.84698 0.76967 1.90408 1.35595 1.62191 1.41999 1.23936 0.94423 0.97115 1.05121 1.23510 0.93898 0.93752 0.90762 0.92545 0.91810 0.91591 0.90579 0.86454 0.86048 0.87922 0.88635 0.85186 0.90722 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.27 13.29 55.43 0.74 -22.53 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 19.53 29.54 -169.99 -5.02 14.50 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.52 -12.77 8.77 -34.44 -0.30 -13.07 16 8 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.03 0.75 3.60 -90.84 -0.33 0.42 16 10 C 0.10 2.03 8.19 -2.77 -0.02 2.01 16 11 N -0.64 -12.01 3.62 -178.12 -0.64 -12.65 16 12 C 0.54 9.54 7.59 -10.99 -0.08 9.46 16 13 O -0.56 -11.58 16.64 5.55 0.09 -11.49 16 14 C -0.12 -1.63 3.92 -90.98 -0.36 -1.99 16 15 C -0.17 -2.14 7.62 -26.91 -0.20 -2.35 16 16 C 0.36 4.62 9.14 -28.16 -0.26 4.36 16 17 O -0.43 -6.68 17.99 6.00 0.11 -6.57 16 18 C -0.17 -2.00 7.38 -27.02 -0.20 -2.20 16 19 C 0.10 2.02 8.39 -2.96 -0.02 2.00 16 20 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 21 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 22 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.08 1.48 8.09 -51.93 -0.42 1.06 16 24 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.12 1.49 8.09 -51.93 -0.42 1.07 16 26 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.13 1.61 7.44 -51.93 -0.39 1.23 16 29 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 269.13 15.07 4.06 4.06 Total: -1.00 -28.30 269.13 -6.28 -34.58 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.73 Total: -0.16 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.88 Total: 0.27 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.09 Total: -35.18 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.20 Total: -18.06 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.30 -6.28 -34.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617896135.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.671 kcal (2) G-P(sol) polarization free energy of solvation -28.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds