Wall clock time and date at job start Mon Mar 30 2020 02:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48507 * 109.47027 * 239.99549 * 3 2 1 5 5 H 1.48504 * 109.47302 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47210 * 120.00035 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47925 * 85.99684 * 138.00415 * 10 9 7 12 12 C 1.34780 * 134.49772 * 155.35643 * 11 10 9 13 13 O 1.21284 * 119.99485 * 179.97438 * 12 11 10 14 14 C 1.50693 * 120.00205 * 0.02562 * 12 11 10 15 15 C 1.53848 * 113.65740 * 279.00026 * 14 12 11 16 16 C 1.51777 * 86.68505 * 220.76393 * 15 14 12 17 17 O 1.20757 * 135.74361 * 205.15776 * 16 15 14 18 18 C 1.51572 * 88.47074 * 25.07637 * 16 15 14 19 19 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 20 20 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 21 21 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 22 22 H 1.09006 * 113.76402 * 252.36573 * 10 9 7 23 23 H 1.08997 * 113.76968 * 23.75198 * 10 9 7 24 24 H 1.09001 * 112.88510 * 50.32733 * 14 12 11 25 25 H 1.08998 * 113.66290 * 335.19399 * 15 14 12 26 26 H 1.08992 * 113.66524 * 106.26424 * 15 14 12 27 27 H 1.09000 * 113.66461 * 220.45807 * 18 16 15 28 28 H 1.08999 * 113.75455 * 89.40381 * 18 16 15 29 29 H 1.09003 * 113.77049 * 270.34039 * 19 11 10 30 30 H 1.08993 * 113.77081 * 138.93800 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 1.1904 -4.2911 -1.0121 12 6 0.8406 -5.5354 -1.3942 13 8 1.3838 -6.4981 -0.8953 14 6 -0.2246 -5.7303 -2.4422 15 6 -1.6578 -5.6235 -1.8929 16 6 -1.9956 -6.7988 -2.7920 17 8 -2.9942 -7.2232 -3.3221 18 6 -0.5370 -7.2073 -2.7377 19 6 2.1608 -3.7402 -0.0462 20 1 -0.4849 0.8401 -0.0004 21 1 0.4833 -2.5466 0.7730 22 1 -0.3213 -2.8307 -1.5255 23 1 1.3285 -2.4988 -2.2141 24 1 -0.0535 -5.1318 -3.3370 25 1 -1.7367 -5.8493 -0.8295 26 1 -2.1648 -4.6994 -2.1701 27 1 -0.1442 -7.5549 -3.6932 28 1 -0.2994 -7.8785 -1.9124 29 1 3.1449 -3.5476 -0.4734 30 1 2.2040 -4.2889 0.8945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617896135.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:38 Heat of formation + Delta-G solvation = -33.839758 kcal Electronic energy + Delta-G solvation = -14855.376775 eV Core-core repulsion = 12231.130029 eV Total energy + Delta-G solvation = -2624.246746 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.65887 -40.35613 -38.72446 -36.83530 -34.59263 -31.04002 -27.63542 -27.13407 -26.80672 -25.33719 -21.92641 -20.17759 -19.63516 -18.76231 -18.06183 -17.20277 -16.94095 -16.54309 -16.24967 -16.02979 -15.27922 -14.96550 -14.32923 -13.95491 -13.67458 -13.38785 -13.26558 -13.05064 -12.74707 -12.63055 -12.40452 -12.23266 -12.17244 -11.35242 -11.09724 -10.69670 -10.54547 -10.44902 -9.51707 -8.13963 -6.24242 0.74368 1.50189 1.51768 1.57786 1.59093 2.03198 2.48428 2.74911 3.17797 3.30080 3.58901 3.67781 4.00729 4.17871 4.34541 4.48573 4.52572 4.57886 4.66535 4.71309 4.80932 4.91034 4.96629 5.05556 5.14080 5.64080 5.85259 6.26132 6.35720 6.83006 6.92248 7.17309 7.45704 8.95255 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.045639 B = 0.006229 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.366940 B = 4493.797480 C = 4943.029617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.064 0.936 9 C 0.020 3.980 10 C 0.121 3.879 11 N -0.638 5.638 12 C 0.536 3.464 13 O -0.592 6.592 14 C -0.119 4.119 15 C -0.171 4.171 16 C 0.375 3.625 17 O -0.458 6.458 18 C -0.158 4.158 19 C 0.107 3.893 20 H 0.264 0.736 21 H 0.037 0.963 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.139 0.861 25 H 0.122 0.878 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.082 0.918 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 -6.673 -5.150 8.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.082 0.918 9 C 0.001 3.999 10 C -0.001 4.001 11 N -0.370 5.370 12 C 0.327 3.673 13 O -0.475 6.475 14 C -0.140 4.140 15 C -0.209 4.209 16 C 0.251 3.749 17 O -0.332 6.332 18 C -0.195 4.195 19 C -0.016 4.016 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.157 0.843 25 H 0.140 0.860 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.145 0.855 29 H 0.101 0.899 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.191 -7.462 -5.239 9.195 hybrid contribution 0.472 1.092 0.220 1.210 sum -0.719 -6.370 -5.019 8.142 Atomic orbital electron populations 1.70027 1.07207 1.27815 1.50369 1.25679 0.95537 1.02233 0.94208 0.85682 0.78384 0.79102 0.78904 1.19377 1.21398 1.19924 1.21250 0.93306 0.90792 1.51600 0.91829 1.20420 0.94214 0.91769 0.93490 1.23530 0.99768 0.76377 1.00464 1.50509 1.39827 1.05237 1.41460 1.20367 0.83463 0.80954 0.82494 1.90626 1.57816 1.40331 1.58702 1.22344 0.93068 0.99858 0.98772 1.24014 0.93517 1.00976 1.02357 1.25713 0.88826 0.84375 0.75976 1.90412 1.36606 1.62987 1.43167 1.23896 0.93456 0.96061 1.06124 1.23381 0.94068 0.92738 0.91372 0.92699 0.94518 0.91035 0.90159 0.84316 0.86002 0.86918 0.86436 0.85500 0.89942 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.04 13.29 21.45 0.28 -47.75 16 2 C 0.02 1.19 5.46 84.65 0.46 1.65 16 3 Si 0.95 39.56 29.54 68.60 2.03 41.59 16 4 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.53 -25.81 8.77 25.60 0.22 -25.59 16 8 H 0.06 3.01 7.81 -2.91 -0.02 2.98 16 9 C 0.02 0.90 3.60 -10.88 -0.04 0.86 16 10 C 0.12 4.58 8.19 86.42 0.71 5.28 16 11 N -0.64 -23.23 3.62 -835.83 -3.02 -26.26 16 12 C 0.54 18.12 7.59 87.65 0.66 18.79 16 13 O -0.59 -23.52 16.64 -3.04 -0.05 -23.57 16 14 C -0.12 -2.90 3.92 -11.03 -0.04 -2.94 16 15 C -0.17 -3.84 7.62 30.48 0.23 -3.61 16 16 C 0.38 8.76 9.14 29.67 0.27 9.03 16 17 O -0.46 -13.50 17.99 -1.44 -0.03 -13.52 16 18 C -0.16 -3.34 7.38 30.41 0.22 -3.12 16 19 C 0.11 4.14 8.39 86.49 0.73 4.86 16 20 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 21 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 23 H 0.08 2.99 8.09 -2.39 -0.02 2.97 16 24 H 0.14 2.83 8.14 -2.39 -0.02 2.81 16 25 H 0.12 2.79 8.09 -2.39 -0.02 2.77 16 26 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.13 2.89 7.44 -2.39 -0.02 2.87 16 29 H 0.08 3.06 8.09 -2.39 -0.02 3.05 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -58.83 269.13 3.78 -55.05 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.14 Total: 9.24 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 3.43 Total: 5.23 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -2.74 Total: -74.01 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -0.08 Total: -37.09 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -58.83 3.78 -55.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617896135.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.211 kcal (2) G-P(sol) polarization free energy of solvation -58.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds