Wall clock time and date at job start Mon Mar 30 2020 03:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47131 * 2 1 4 4 C 1.50705 * 109.47146 * 180.02562 * 3 2 1 5 5 O 1.33670 * 125.80971 * 269.97587 * 4 3 2 6 6 C 1.34225 * 110.91182 * 180.02562 * 5 4 3 7 7 C 1.34173 * 109.14105 * 0.02562 * 6 5 4 8 8 C 1.36502 * 125.81178 * 90.32091 * 4 3 2 9 9 C 1.47290 * 127.19554 * 359.95173 * 8 4 3 10 10 O 1.21642 * 120.00603 * 0.19501 * 9 8 4 11 11 N 1.34783 * 120.00030 * 180.20751 * 9 8 4 12 12 C 1.36962 * 120.00180 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99965 * 359.97438 * 12 11 9 14 14 C 1.38976 * 119.99972 * 179.97438 * 12 11 9 15 15 N 1.31413 * 120.00057 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00172 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47520 * 89.99133 * 16 14 12 18 18 H 1.48498 * 109.47262 * 210.00139 * 16 14 12 19 19 H 1.48505 * 109.46667 * 329.99277 * 16 14 12 20 20 H 1.08998 * 109.47488 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46789 * 299.99768 * 1 2 3 22 22 H 1.09000 * 109.47298 * 60.00125 * 1 2 3 23 23 H 1.09000 * 109.47096 * 239.99514 * 2 1 3 24 24 H 1.09000 * 109.47298 * 119.99875 * 2 1 3 25 25 H 1.09005 * 109.47534 * 60.00263 * 3 2 1 26 26 H 1.09006 * 109.47489 * 299.99726 * 3 2 1 27 27 H 1.07999 * 125.42630 * 179.97438 * 6 5 4 28 28 H 1.08002 * 127.01482 * 179.97438 * 7 6 5 29 29 H 0.96996 * 119.99691 * 359.97438 * 11 9 8 30 30 H 0.96996 * 119.99867 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.3296 1.4427 1.0830 6 6 5.6265 1.4432 0.7374 7 6 5.7253 1.4438 -0.6007 8 6 4.3452 1.4488 -1.1079 9 6 3.9142 1.4559 -2.5163 10 8 2.7289 1.4601 -2.7897 11 7 4.8331 1.4575 -3.5023 12 6 4.4323 1.4636 -4.8120 13 1 3.3799 1.4667 -5.0546 14 6 5.3799 1.4658 -5.8286 15 7 4.9953 1.4711 -7.0852 16 14 7.2001 1.4597 -5.4090 17 1 7.6792 0.0581 -5.3036 18 1 7.9565 2.1626 -6.4762 19 1 7.4116 2.1538 -4.1133 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 6.4581 1.4439 1.4266 28 1 6.6331 1.4447 -1.1857 29 1 5.7783 1.4543 -3.2844 30 1 5.6567 1.4722 -7.7948 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619611649.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:37 Heat of formation + Delta-G solvation = -36.736639 kcal Electronic energy + Delta-G solvation = -15001.668841 eV Core-core repulsion = 12377.296476 eV Total energy + Delta-G solvation = -2624.372364 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.14070 -38.09028 -35.00064 -33.90201 -32.45560 -31.51957 -29.95635 -26.46382 -24.96013 -22.30398 -21.53125 -20.36795 -19.22940 -18.20181 -16.93074 -15.80001 -15.23691 -14.96498 -14.72275 -14.25059 -13.48125 -13.40633 -13.13673 -12.78050 -12.53516 -12.45734 -12.05806 -11.67152 -11.26108 -11.13181 -11.04734 -10.62051 -10.39638 -10.01678 -9.66686 -9.33323 -8.60228 -8.24318 -8.14243 -6.37246 -3.83676 1.89640 2.45635 3.02554 3.06223 3.12485 3.17903 4.06511 4.27316 4.69566 4.82502 5.18635 5.24660 5.30583 5.35151 5.46304 5.53517 5.81777 5.86805 5.96013 6.05803 6.17222 6.25726 6.41849 6.52562 6.58251 6.69826 7.39084 7.56824 8.12594 8.57120 8.90331 9.39189 9.83374 10.75264 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.030735 B = 0.008497 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.797789 B = 3294.641480 C = 4088.295021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.039 4.039 4 C 0.045 3.955 5 O -0.183 6.183 6 C -0.050 4.050 7 C -0.199 4.199 8 C -0.205 4.205 9 C 0.513 3.487 10 O -0.577 6.577 11 N -0.574 5.574 12 C -0.301 4.301 13 H 0.123 0.877 14 C 0.042 3.958 15 N -0.875 5.875 16 Si 0.877 3.123 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.268 1.268 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.116 0.884 27 H 0.201 0.799 28 H 0.149 0.851 29 H 0.372 0.628 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 -1.037 14.847 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.076 4.076 4 C -0.007 4.007 5 O -0.080 6.080 6 C -0.116 4.116 7 C -0.219 4.219 8 C -0.210 4.210 9 C 0.302 3.698 10 O -0.463 6.463 11 N -0.211 5.211 12 C -0.430 4.430 13 H 0.140 0.860 14 C -0.161 4.161 15 N -0.514 5.514 16 Si 0.704 3.296 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.194 1.194 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.134 0.866 27 H 0.218 0.782 28 H 0.167 0.833 29 H 0.205 0.795 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.233 -1.034 14.675 14.713 hybrid contribution 1.986 0.024 -0.048 1.987 sum 2.220 -1.010 14.627 14.829 Atomic orbital electron populations 1.21725 0.95375 1.01551 1.01890 1.21432 0.95939 0.95509 1.02373 1.20371 0.83770 0.98926 1.04556 1.22667 0.93576 1.01551 0.82937 1.83688 1.16806 1.72112 1.35378 1.23663 0.83778 1.07999 0.96152 1.22940 0.97263 1.07099 0.94574 1.21587 0.92271 1.11808 0.95329 1.16655 0.86048 0.84444 0.82699 1.90606 1.16219 1.56148 1.83301 1.42064 1.07109 1.65339 1.06545 1.19495 0.97108 1.47447 0.78917 0.85951 1.25064 0.98616 0.97482 0.94984 1.69618 1.34722 1.48417 0.98634 0.86689 0.85137 0.79081 0.78742 1.19412 1.19945 1.19382 0.92789 0.93090 0.92016 0.90848 0.92558 0.91018 0.86587 0.78211 0.83297 0.79518 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.11 -1.68 5.92 -26.73 -0.16 -1.84 16 3 C -0.04 -0.62 5.23 -27.88 -0.15 -0.77 16 4 C 0.05 0.80 6.63 -34.93 -0.23 0.57 16 5 O -0.18 -2.88 10.52 7.58 0.08 -2.80 16 6 C -0.05 -0.68 12.03 29.30 0.35 -0.33 16 7 C -0.20 -3.26 10.60 -37.45 -0.40 -3.66 16 8 C -0.21 -4.12 6.31 -103.28 -0.65 -4.77 16 9 C 0.51 12.54 7.76 -12.58 -0.10 12.45 16 10 O -0.58 -15.56 14.41 5.24 0.08 -15.49 16 11 N -0.57 -14.39 5.08 -11.99 -0.06 -14.45 16 12 C -0.30 -8.62 10.16 -14.99 -0.15 -8.77 16 13 H 0.12 3.94 7.38 -52.48 -0.39 3.56 16 14 C 0.04 1.17 5.50 -17.46 -0.10 1.07 16 15 N -0.87 -25.44 13.96 55.50 0.77 -24.67 16 16 Si 0.88 19.55 27.74 -169.99 -4.71 14.83 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.51 6.52 56.52 0.37 -5.15 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.12 2.11 6.47 -51.93 -0.34 1.77 16 27 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.15 2.18 7.74 -52.49 -0.41 1.77 16 29 H 0.37 8.34 4.93 -40.82 -0.20 8.14 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 264.23 15.07 3.98 3.98 Total: -1.00 -31.86 264.23 -4.53 -36.40 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -3.46 Total: 9.71 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -1.21 Total: -7.52 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.71 Total: -39.12 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.16 Total: -18.28 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.86 -4.53 -36.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619611649.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.341 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds