Wall clock time and date at job start Mon Mar 30 2020 03:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47131 * 2 1 4 4 C 1.50705 * 109.47146 * 180.02562 * 3 2 1 5 5 O 1.33670 * 125.80971 * 269.97587 * 4 3 2 6 6 C 1.34225 * 110.91182 * 180.02562 * 5 4 3 7 7 C 1.34173 * 109.14105 * 0.02562 * 6 5 4 8 8 C 1.36502 * 125.81178 * 90.32091 * 4 3 2 9 9 C 1.47290 * 127.19554 * 359.95173 * 8 4 3 10 10 O 1.21642 * 120.00603 * 0.19501 * 9 8 4 11 11 N 1.34783 * 120.00030 * 180.20751 * 9 8 4 12 12 C 1.36962 * 120.00180 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99965 * 359.97438 * 12 11 9 14 14 C 1.38976 * 119.99972 * 179.97438 * 12 11 9 15 15 N 1.31413 * 120.00057 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00172 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47520 * 89.99133 * 16 14 12 18 18 H 1.48498 * 109.47262 * 210.00139 * 16 14 12 19 19 H 1.48505 * 109.46667 * 329.99277 * 16 14 12 20 20 H 1.08998 * 109.47488 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46789 * 299.99768 * 1 2 3 22 22 H 1.09000 * 109.47298 * 60.00125 * 1 2 3 23 23 H 1.09000 * 109.47096 * 239.99514 * 2 1 3 24 24 H 1.09000 * 109.47298 * 119.99875 * 2 1 3 25 25 H 1.09005 * 109.47534 * 60.00263 * 3 2 1 26 26 H 1.09006 * 109.47489 * 299.99726 * 3 2 1 27 27 H 1.07999 * 125.42630 * 179.97438 * 6 5 4 28 28 H 1.08002 * 127.01482 * 179.97438 * 7 6 5 29 29 H 0.96996 * 119.99691 * 359.97438 * 11 9 8 30 30 H 0.96996 * 119.99867 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.3296 1.4427 1.0830 6 6 5.6265 1.4432 0.7374 7 6 5.7253 1.4438 -0.6007 8 6 4.3452 1.4488 -1.1079 9 6 3.9142 1.4559 -2.5163 10 8 2.7289 1.4601 -2.7897 11 7 4.8331 1.4575 -3.5023 12 6 4.4323 1.4636 -4.8120 13 1 3.3799 1.4667 -5.0546 14 6 5.3799 1.4658 -5.8286 15 7 4.9953 1.4711 -7.0852 16 14 7.2001 1.4597 -5.4090 17 1 7.6792 0.0581 -5.3036 18 1 7.9565 2.1626 -6.4762 19 1 7.4116 2.1538 -4.1133 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 6.4581 1.4439 1.4266 28 1 6.6331 1.4447 -1.1857 29 1 5.7783 1.4543 -3.2844 30 1 5.6567 1.4722 -7.7948 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619611649.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:36 Heat of formation + Delta-G solvation = -59.071254 kcal Electronic energy + Delta-G solvation = -15002.637342 eV Core-core repulsion = 12377.296476 eV Total energy + Delta-G solvation = -2625.340866 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.44207 -40.04182 -36.42058 -35.76823 -34.08236 -33.36692 -31.17870 -28.01101 -26.67184 -23.89277 -22.69803 -21.79564 -21.19113 -19.83453 -18.51127 -17.13304 -17.05972 -16.55236 -16.02183 -15.67766 -15.36490 -15.16701 -14.69065 -14.25750 -14.02138 -13.88069 -13.61265 -13.05533 -12.81739 -12.48334 -12.33251 -12.16978 -12.03137 -11.64698 -11.55096 -10.73155 -10.58198 -10.30962 -9.48435 -8.48179 -6.06111 0.46035 1.18341 1.25492 1.35361 1.39403 1.93009 2.17383 2.41215 2.93209 3.19296 3.64100 3.97047 4.02307 4.09173 4.15790 4.37008 4.57348 4.72578 4.78247 4.88505 4.95377 5.03198 5.26896 5.29737 5.40556 5.42776 5.51309 5.87842 6.14114 6.52853 6.79014 7.31551 7.86989 8.68853 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.030735 B = 0.008497 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.797789 B = 3294.641480 C = 4088.295021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.043 4.043 4 C 0.055 3.945 5 O -0.175 6.175 6 C -0.016 4.016 7 C -0.219 4.219 8 C -0.250 4.250 9 C 0.514 3.486 10 O -0.615 6.615 11 N -0.576 5.576 12 C -0.330 4.330 13 H 0.062 0.938 14 C -0.010 4.010 15 N -0.925 5.925 16 Si 0.959 3.041 17 H -0.254 1.254 18 H -0.267 1.267 19 H -0.237 1.237 20 H 0.066 0.934 21 H 0.076 0.924 22 H 0.042 0.958 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.259 0.741 28 H 0.167 0.833 29 H 0.387 0.613 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 -1.106 18.363 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.079 4.079 4 C 0.002 3.998 5 O -0.071 6.071 6 C -0.082 4.082 7 C -0.238 4.238 8 C -0.254 4.254 9 C 0.304 3.696 10 O -0.502 6.502 11 N -0.215 5.215 12 C -0.459 4.459 13 H 0.080 0.920 14 C -0.210 4.210 15 N -0.565 5.565 16 Si 0.778 3.222 17 H -0.178 1.178 18 H -0.192 1.192 19 H -0.160 1.160 20 H 0.085 0.915 21 H 0.095 0.905 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.125 0.875 26 H 0.102 0.898 27 H 0.275 0.725 28 H 0.185 0.815 29 H 0.223 0.777 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.864 -1.103 18.217 18.474 hybrid contribution 1.034 0.044 -1.034 1.463 sum 3.897 -1.058 17.183 17.651 Atomic orbital electron populations 1.21707 0.93631 1.02562 1.02260 1.21389 0.97494 0.94447 1.01472 1.20410 0.83157 0.99735 1.04642 1.22862 0.94311 0.99615 0.82989 1.83746 1.17766 1.71491 1.34117 1.24690 0.83722 1.03691 0.96057 1.23152 0.95895 1.08808 0.95972 1.21361 0.95430 1.15653 0.93002 1.17458 0.85481 0.82049 0.84622 1.90578 1.18062 1.57032 1.84570 1.41833 1.07996 1.66524 1.05186 1.19071 0.95018 1.50423 0.81407 0.91999 1.26085 1.04910 0.95830 0.94151 1.69780 1.37262 1.49296 1.00148 0.85453 0.76493 0.80198 0.80047 1.17824 1.19168 1.16039 0.91506 0.90466 0.93869 0.94637 0.90388 0.87520 0.89804 0.72510 0.81540 0.77700 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.11 -3.18 5.92 30.59 0.18 -3.00 16 3 C -0.04 -1.32 5.23 29.85 0.16 -1.16 16 4 C 0.06 1.88 6.63 25.28 0.17 2.05 16 5 O -0.18 -4.77 10.52 4.22 0.04 -4.73 16 6 C -0.02 -0.36 12.03 66.89 0.80 0.44 16 7 C -0.22 -6.43 10.60 23.65 0.25 -6.18 16 8 C -0.25 -9.86 6.31 -19.00 -0.12 -9.98 16 9 C 0.51 26.11 7.76 86.62 0.67 26.78 16 10 O -0.62 -35.55 14.41 -4.16 -0.06 -35.61 16 11 N -0.58 -29.68 5.08 -310.08 -1.58 -31.26 16 12 C -0.33 -20.05 10.16 84.07 0.85 -19.20 16 13 H 0.06 4.39 7.38 -2.91 -0.02 4.37 16 14 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 15 N -0.93 -56.09 13.96 21.67 0.30 -55.79 16 16 Si 0.96 39.75 27.74 68.60 1.90 41.65 16 17 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 19 H -0.24 -8.52 6.52 99.48 0.65 -7.88 16 20 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.11 2.53 8.14 -2.38 -0.02 2.51 16 26 H 0.08 3.19 6.47 -2.38 -0.02 3.17 16 27 H 0.26 2.54 8.06 -2.91 -0.02 2.52 16 28 H 0.17 4.19 7.74 -2.91 -0.02 4.17 16 29 H 0.39 17.03 4.93 -92.71 -0.46 16.58 16 30 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -76.20 264.23 5.40 -70.81 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.64 Total: 28.00 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 4.15 Total: -13.08 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -1.27 Total: -87.05 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.02 Total: -40.34 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.90 Total: 41.65 kcal Total: -76.20 5.40 -70.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619611649.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.737 kcal (2) G-P(sol) polarization free energy of solvation -76.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds