Wall clock time and date at job start Mon Mar 30 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48499 * 109.46691 * 239.99926 * 3 2 1 5 5 H 1.48493 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47132 * 120.00173 * 3 2 1 7 7 C 1.40169 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00085 * 180.02562 * 7 2 1 9 9 C 1.39852 * 119.99799 * 359.97438 * 7 2 1 10 10 C 1.39418 * 126.87446 * 359.96405 * 9 7 2 11 11 N 1.33324 * 107.08239 * 180.02562 * 10 9 7 12 12 C 1.30798 * 109.25623 * 359.97438 * 11 10 9 13 13 C 1.50696 * 125.15754 * 179.97438 * 12 11 10 14 14 C 1.53182 * 109.54598 * 59.57665 * 13 12 11 15 15 C 1.53089 * 109.16417 * 183.15367 * 14 13 12 16 16 O 1.42907 * 109.41559 * 57.61016 * 15 14 13 17 17 C 1.42904 * 114.09810 * 298.84216 * 16 15 14 18 18 C 1.53094 * 109.41430 * 61.15438 * 17 16 15 19 19 O 1.34014 * 109.69177 * 0.02562 * 12 11 10 20 20 H 0.97002 * 119.99970 * 359.97438 * 1 2 3 21 21 H 1.08003 * 126.45915 * 0.04775 * 10 9 7 22 22 H 1.09003 * 109.54740 * 179.84920 * 13 12 11 23 23 H 1.08994 * 109.52170 * 303.06560 * 14 13 12 24 24 H 1.09001 * 109.52079 * 63.24989 * 14 13 12 25 25 H 1.09002 * 109.48324 * 297.62766 * 15 14 13 26 26 H 1.08999 * 109.47742 * 177.59206 * 15 14 13 27 27 H 1.08999 * 109.48201 * 301.17450 * 17 16 15 28 28 H 1.08998 * 109.47988 * 181.13688 * 17 16 15 29 29 H 1.08999 * 109.52319 * 182.48568 * 18 17 16 30 30 H 1.09004 * 109.57628 * 62.33051 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0958 1.6963 -1.2125 5 1 1.2771 2.7464 -0.0006 6 1 3.0958 1.6963 1.2124 7 6 2.0088 -1.2139 0.0005 8 1 3.0888 -1.2140 0.0010 9 6 1.3095 -2.4250 0.0016 10 6 -0.0747 -2.5918 0.0030 11 7 -0.3111 -3.9039 0.0042 12 6 0.8277 -4.5474 0.0032 13 6 0.9771 -6.0469 0.0046 14 6 0.2986 -6.6307 -1.2385 15 6 0.3867 -8.1583 -1.1884 16 8 -0.2236 -8.6302 0.0145 17 6 0.3987 -8.1547 1.2099 18 6 0.3111 -6.6270 1.2562 19 8 1.8416 -3.6710 0.0018 20 1 -0.4850 0.8401 0.0004 21 1 -0.8158 -1.8062 0.0027 22 1 2.0354 -6.3080 0.0006 23 1 -0.7479 -6.3267 -1.2589 24 1 0.8024 -6.2659 -2.1336 25 1 1.4331 -8.4629 -1.2089 26 1 -0.1319 -8.5806 -2.0491 27 1 1.4452 -8.4593 1.2208 28 1 -0.1114 -8.5745 2.0769 29 1 0.8237 -6.2595 2.1451 30 1 -0.7350 -6.3219 1.2867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642886453.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:31 Heat of formation + Delta-G solvation = -55.605510 kcal Electronic energy + Delta-G solvation = -15098.326505 eV Core-core repulsion = 12473.135925 eV Total energy + Delta-G solvation = -2625.190580 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.02495 -38.90686 -34.27107 -33.77013 -32.43415 -30.84898 -28.92774 -26.13296 -23.59254 -23.23494 -21.00739 -20.34642 -18.99646 -17.58719 -16.07289 -15.79576 -15.55907 -14.79668 -14.68920 -14.52056 -13.70591 -13.32673 -12.80711 -12.66081 -12.11230 -12.06272 -11.41299 -11.40978 -11.01176 -10.81463 -10.62018 -10.50512 -10.38232 -10.02829 -9.63310 -9.42620 -9.35310 -8.67260 -7.30187 -6.92244 -4.55071 2.80403 2.96004 2.99781 3.34181 3.73107 4.04611 4.38296 4.46979 5.09313 5.16030 5.18325 5.29266 5.44976 5.48667 5.66076 5.68526 5.86503 5.96115 6.07664 6.24774 6.34518 6.58891 6.76970 6.87515 7.21322 7.36295 7.46385 7.60084 8.17960 8.34592 8.57374 8.70788 9.76254 10.03004 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.076510 B = 0.005960 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.878637 B = 4697.145153 C = 4734.730050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.068 3.932 3 Si 0.941 3.059 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.423 4.423 8 H 0.083 0.917 9 C 0.141 3.859 10 C -0.172 4.172 11 N -0.451 5.451 12 C 0.019 3.981 13 C 0.040 3.960 14 C -0.144 4.144 15 C 0.063 3.937 16 O -0.386 6.386 17 C 0.063 3.937 18 C -0.144 4.144 19 O -0.245 6.245 20 H 0.286 0.714 21 H 0.192 0.808 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.098 -7.768 0.009 8.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.150 4.150 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.454 4.454 8 H 0.101 0.899 9 C 0.088 3.912 10 C -0.318 4.318 11 N -0.180 5.180 12 C -0.180 4.180 13 C 0.020 3.980 14 C -0.182 4.182 15 C -0.013 4.013 16 O -0.305 6.305 17 C -0.013 4.013 18 C -0.182 4.182 19 O -0.136 6.136 20 H 0.097 0.903 21 H 0.209 0.791 22 H 0.092 0.908 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.211 -8.115 0.011 8.205 hybrid contribution 1.280 1.495 -0.002 1.968 sum 2.490 -6.620 0.009 7.073 Atomic orbital electron populations 1.69581 1.07604 1.29611 1.34592 1.25848 0.95075 1.01369 0.92682 0.85826 0.79422 0.78289 0.80040 1.18731 1.19879 1.18728 1.18338 0.94795 0.86921 1.45304 0.89860 1.20729 0.92934 0.81642 0.95909 1.24150 0.95114 0.90736 1.21834 1.69511 1.27562 1.07314 1.13579 1.24411 0.81336 0.92399 1.19889 1.18898 0.99269 0.84840 0.94962 1.22230 1.03088 0.94849 0.98031 1.22606 0.97452 0.93853 0.87429 1.87884 1.57415 1.71290 1.13918 1.22604 0.97303 0.93811 0.87615 1.22235 1.03137 0.94869 0.97983 1.84305 1.37796 1.16582 1.74950 0.90252 0.79116 0.90845 0.89963 0.91066 0.93456 0.89025 0.93453 0.89025 0.91074 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.20 10.32 55.56 0.57 -19.63 16 2 C 0.07 1.70 5.50 -17.27 -0.09 1.61 16 3 Si 0.94 18.33 29.56 -169.99 -5.03 13.30 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.42 -11.53 9.45 -38.25 -0.36 -11.89 16 8 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 9 C 0.14 4.07 7.08 -38.54 -0.27 3.80 16 10 C -0.17 -4.99 10.89 -16.46 -0.18 -5.17 16 11 N -0.45 -12.27 11.23 -10.03 -0.11 -12.38 16 12 C 0.02 0.46 6.81 -12.72 -0.09 0.38 16 13 C 0.04 0.76 2.75 -91.59 -0.25 0.51 16 14 C -0.14 -2.42 5.40 -26.59 -0.14 -2.56 16 15 C 0.06 0.86 6.84 37.20 0.25 1.11 16 16 O -0.39 -5.81 10.77 -35.23 -0.38 -6.19 16 17 C 0.06 0.86 6.84 37.21 0.25 1.11 16 18 C -0.14 -2.42 5.40 -26.59 -0.14 -2.56 16 19 O -0.24 -6.76 10.81 3.10 0.03 -6.73 16 20 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 21 H 0.19 5.61 5.76 -52.48 -0.30 5.31 16 22 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 23 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 256.16 15.07 3.86 3.86 Total: -1.00 -30.27 256.16 -5.73 -36.00 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -3.65 Total: 5.44 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.03 Total: -13.67 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.46 Total: -32.01 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.35 Total: -12.92 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.27 -5.73 -36.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642886453.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.607 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds