Wall clock time and date at job start Mon Mar 30 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48499 * 109.46691 * 239.99926 * 3 2 1 5 5 H 1.48493 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47132 * 120.00173 * 3 2 1 7 7 C 1.40169 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00085 * 180.02562 * 7 2 1 9 9 C 1.39852 * 119.99799 * 359.97438 * 7 2 1 10 10 C 1.39418 * 126.87446 * 359.96405 * 9 7 2 11 11 N 1.33324 * 107.08239 * 180.02562 * 10 9 7 12 12 C 1.30798 * 109.25623 * 359.97438 * 11 10 9 13 13 C 1.50696 * 125.15754 * 179.97438 * 12 11 10 14 14 C 1.53182 * 109.54598 * 59.57665 * 13 12 11 15 15 C 1.53089 * 109.16417 * 183.15367 * 14 13 12 16 16 O 1.42907 * 109.41559 * 57.61016 * 15 14 13 17 17 C 1.42904 * 114.09810 * 298.84216 * 16 15 14 18 18 C 1.53094 * 109.41430 * 61.15438 * 17 16 15 19 19 O 1.34014 * 109.69177 * 0.02562 * 12 11 10 20 20 H 0.97002 * 119.99970 * 359.97438 * 1 2 3 21 21 H 1.08003 * 126.45915 * 0.04775 * 10 9 7 22 22 H 1.09003 * 109.54740 * 179.84920 * 13 12 11 23 23 H 1.08994 * 109.52170 * 303.06560 * 14 13 12 24 24 H 1.09001 * 109.52079 * 63.24989 * 14 13 12 25 25 H 1.09002 * 109.48324 * 297.62766 * 15 14 13 26 26 H 1.08999 * 109.47742 * 177.59206 * 15 14 13 27 27 H 1.08999 * 109.48201 * 301.17450 * 17 16 15 28 28 H 1.08998 * 109.47988 * 181.13688 * 17 16 15 29 29 H 1.08999 * 109.52319 * 182.48568 * 18 17 16 30 30 H 1.09004 * 109.57628 * 62.33051 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0958 1.6963 -1.2125 5 1 1.2771 2.7464 -0.0006 6 1 3.0958 1.6963 1.2124 7 6 2.0088 -1.2139 0.0005 8 1 3.0888 -1.2140 0.0010 9 6 1.3095 -2.4250 0.0016 10 6 -0.0747 -2.5918 0.0030 11 7 -0.3111 -3.9039 0.0042 12 6 0.8277 -4.5474 0.0032 13 6 0.9771 -6.0469 0.0046 14 6 0.2986 -6.6307 -1.2385 15 6 0.3867 -8.1583 -1.1884 16 8 -0.2236 -8.6302 0.0145 17 6 0.3987 -8.1547 1.2099 18 6 0.3111 -6.6270 1.2562 19 8 1.8416 -3.6710 0.0018 20 1 -0.4850 0.8401 0.0004 21 1 -0.8158 -1.8062 0.0027 22 1 2.0354 -6.3080 0.0006 23 1 -0.7479 -6.3267 -1.2589 24 1 0.8024 -6.2659 -2.1336 25 1 1.4331 -8.4629 -1.2089 26 1 -0.1319 -8.5806 -2.0491 27 1 1.4452 -8.4593 1.2208 28 1 -0.1114 -8.5745 2.0769 29 1 0.8237 -6.2595 2.1451 30 1 -0.7350 -6.3219 1.2867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642886453.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:31 Heat of formation + Delta-G solvation = -77.902792 kcal Electronic energy + Delta-G solvation = -15099.293388 eV Core-core repulsion = 12473.135925 eV Total energy + Delta-G solvation = -2626.157463 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.10361 -40.13847 -36.13129 -35.46413 -34.38740 -32.04275 -30.94184 -27.82357 -25.30754 -24.45846 -23.01230 -22.06762 -20.68726 -19.60892 -17.73103 -17.18442 -17.03099 -16.64154 -16.43791 -15.66317 -15.37881 -14.66467 -14.63455 -14.23735 -14.06047 -13.29331 -13.20069 -13.04550 -12.58923 -12.29479 -12.23158 -12.06466 -11.88657 -11.55267 -11.35616 -11.29600 -10.79649 -10.53833 -9.41130 -8.83246 -6.64369 1.00813 1.35382 1.53133 1.61191 2.08307 2.36049 2.58293 3.01294 3.03531 3.70698 3.89481 3.92753 4.06462 4.20558 4.34387 4.49584 4.65641 4.68546 4.79079 4.86723 4.90938 5.07863 5.15008 5.20640 5.30110 5.41203 5.56464 6.12715 6.27891 6.28617 6.44073 6.61120 7.64547 8.14905 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.076510 B = 0.005960 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.878637 B = 4697.145153 C = 4734.730050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.026 3.974 3 Si 1.024 2.976 4 H -0.254 1.254 5 H -0.259 1.259 6 H -0.254 1.254 7 C -0.455 4.455 8 H 0.092 0.908 9 C 0.111 3.889 10 C -0.213 4.213 11 N -0.473 5.473 12 C 0.034 3.966 13 C 0.032 3.968 14 C -0.139 4.139 15 C 0.070 3.930 16 O -0.399 6.399 17 C 0.070 3.930 18 C -0.140 4.140 19 O -0.259 6.259 20 H 0.299 0.701 21 H 0.179 0.821 22 H 0.095 0.905 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.114 0.886 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 -8.359 0.008 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.189 4.189 3 Si 0.841 3.159 4 H -0.178 1.178 5 H -0.182 1.182 6 H -0.178 1.178 7 C -0.484 4.484 8 H 0.110 0.890 9 C 0.059 3.941 10 C -0.357 4.357 11 N -0.201 5.201 12 C -0.167 4.167 13 C 0.013 3.987 14 C -0.178 4.178 15 C -0.007 4.007 16 O -0.318 6.318 17 C -0.007 4.007 18 C -0.178 4.178 19 O -0.152 6.152 20 H 0.110 0.890 21 H 0.196 0.804 22 H 0.113 0.887 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.132 0.868 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.089 0.911 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.558 -8.709 0.010 9.077 hybrid contribution 0.812 1.624 -0.002 1.815 sum 3.370 -7.085 0.008 7.846 Atomic orbital electron populations 1.69637 1.09387 1.31528 1.33467 1.27104 0.95974 1.04847 0.91022 0.84632 0.78090 0.72676 0.80492 1.17796 1.18232 1.17789 1.18851 0.95519 0.87503 1.46504 0.89031 1.21209 0.93308 0.82596 0.96983 1.24003 0.95263 0.91353 1.25056 1.69481 1.28696 1.06861 1.15055 1.25827 0.80338 0.94555 1.15977 1.19353 1.01235 0.80827 0.97305 1.22194 1.00995 0.97752 0.96840 1.22693 0.99417 0.90734 0.87833 1.87885 1.58258 1.71056 1.14589 1.22691 0.99247 0.90687 0.88041 1.22199 1.01056 0.97777 0.96772 1.84314 1.38680 1.16718 1.75508 0.88977 0.80394 0.88679 0.92660 0.91041 0.90813 0.86800 0.90811 0.86802 0.91052 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.61 10.32 21.87 0.23 -42.39 16 2 C 0.03 1.30 5.50 85.32 0.47 1.77 16 3 Si 1.02 36.60 29.56 68.60 2.03 38.63 16 4 H -0.25 -8.70 7.11 99.48 0.71 -8.00 16 5 H -0.26 -8.52 7.11 99.48 0.71 -7.82 16 6 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 7 C -0.45 -25.34 9.45 23.13 0.22 -25.12 16 8 H 0.09 4.76 7.85 -2.91 -0.02 4.74 16 9 C 0.11 6.71 7.08 22.95 0.16 6.87 16 10 C -0.21 -12.99 10.89 84.75 0.92 -12.07 16 11 N -0.47 -26.84 11.23 -300.14 -3.37 -30.21 16 12 C 0.03 1.76 6.81 88.26 0.60 2.36 16 13 C 0.03 1.20 2.75 -11.42 -0.03 1.17 16 14 C -0.14 -4.55 5.40 30.68 0.17 -4.38 16 15 C 0.07 1.67 6.84 72.01 0.49 2.16 16 16 O -0.40 -10.80 10.77 -148.98 -1.60 -12.40 16 17 C 0.07 1.67 6.84 72.01 0.49 2.17 16 18 C -0.14 -4.56 5.40 30.69 0.17 -4.39 16 19 O -0.26 -14.73 10.81 -11.82 -0.13 -14.86 16 20 H 0.30 13.76 8.30 -92.71 -0.77 12.99 16 21 H 0.18 11.12 5.76 -2.91 -0.02 11.10 16 22 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 23 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -68.52 256.16 1.95 -66.57 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 1.14 Total: 24.13 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 3.66 Total: -29.46 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -3.14 Total: -72.59 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -1.73 Total: -27.26 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -68.52 1.95 -66.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642886453.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.337 kcal (2) G-P(sol) polarization free energy of solvation -68.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds