Wall clock time and date at job start Mon Mar 30 2020 02:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 11 11 N 1.46904 * 109.47195 * 180.27796 * 9 7 2 12 12 C 1.46894 * 111.00006 * 155.00140 * 11 9 7 13 13 C 1.53775 * 113.61780 * 252.49857 * 12 11 9 14 14 C 1.53781 * 87.08447 * 220.02223 * 13 12 11 15 15 C 1.53776 * 87.08110 * 25.42877 * 14 13 12 16 16 C 1.53005 * 109.47000 * 60.28391 * 9 7 2 17 17 F 1.39897 * 109.47542 * 59.99523 * 16 9 7 18 18 F 1.39898 * 109.46978 * 179.97438 * 16 9 7 19 19 F 1.39909 * 109.46562 * 299.99500 * 16 9 7 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.00902 * 110.99844 * 31.05078 * 11 9 7 22 22 H 1.09005 * 112.85393 * 23.80837 * 12 11 9 23 23 H 1.09005 * 113.61338 * 334.56734 * 13 12 11 24 24 H 1.08998 * 113.61668 * 105.47069 * 13 12 11 25 25 H 1.09004 * 113.61100 * 270.88636 * 14 13 12 26 26 H 1.08996 * 113.61679 * 139.98559 * 14 13 12 27 27 H 1.08997 * 113.62013 * 220.01902 * 15 14 13 28 28 H 1.09003 * 113.69020 * 89.13135 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6245 -2.5529 0.8956 11 7 2.2058 -3.6156 0.0103 12 6 1.6033 -4.8208 0.5953 13 6 2.1440 -5.1633 1.9935 14 6 2.1177 -6.6375 1.5565 15 6 2.2493 -6.1297 0.1110 16 6 0.3715 -2.5858 -1.2435 17 9 1.1757 -2.5167 -2.3862 18 9 -0.3275 -3.7976 -1.2383 19 9 -0.5377 -1.5224 -1.2481 20 1 -0.4850 0.8400 0.0004 21 1 3.0542 -3.3638 0.4949 22 1 0.5150 -4.8224 0.5341 23 1 3.1477 -4.7809 2.1792 24 1 1.4468 -4.9343 2.7994 25 1 1.1699 -7.1362 1.7595 26 1 2.9800 -7.2098 1.8985 27 1 1.6371 -6.6807 -0.6029 28 1 3.2812 -6.0112 -0.2194 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000675058925.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:36 Heat of formation + Delta-G solvation = -138.704331 kcal Electronic energy + Delta-G solvation = -16406.123714 eV Core-core repulsion = 13235.472958 eV Total energy + Delta-G solvation = -3170.650756 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.32432 -47.96638 -47.63532 -39.83527 -36.23706 -33.91886 -29.38277 -26.54313 -26.38801 -24.73973 -22.68035 -20.62798 -19.08996 -18.71424 -18.52894 -17.35327 -16.80777 -16.34015 -16.15342 -15.14988 -14.92323 -14.58780 -14.38792 -14.23712 -14.14105 -13.91195 -13.76166 -13.27465 -13.06249 -12.92910 -12.68615 -12.48695 -12.23979 -11.70693 -11.35651 -11.32125 -11.01667 -10.62593 -9.21343 -8.17834 -6.45102 1.44171 1.47137 1.54817 2.36533 2.58381 2.97572 3.28428 3.78742 3.85342 3.89844 3.99330 4.07770 4.17934 4.43339 4.72879 4.87109 4.92407 4.92963 5.09463 5.18510 5.32430 5.49451 5.60554 5.71421 6.22048 6.56699 6.76415 7.25556 8.74838 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.034011 B = 0.010872 C = 0.009257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.070117 B = 2574.908194 C = 3023.995339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.013 3.987 3 Si 0.975 3.025 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.193 3.807 10 H 0.018 0.982 11 N -0.673 5.673 12 C 0.041 3.959 13 C -0.162 4.162 14 C -0.124 4.124 15 C -0.125 4.125 16 C 0.434 3.566 17 F -0.204 7.204 18 F -0.221 7.221 19 F -0.157 7.157 20 H 0.265 0.735 21 H 0.354 0.646 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 -7.644 2.703 8.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.191 4.191 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.097 0.903 9 C 0.081 3.919 10 H 0.035 0.965 11 N -0.304 5.304 12 C -0.069 4.069 13 C -0.202 4.202 14 C -0.161 4.161 15 C -0.163 4.163 16 C 0.378 3.622 17 F -0.186 7.186 18 F -0.204 7.204 19 F -0.138 7.138 20 H 0.075 0.925 21 H 0.176 0.824 22 H 0.094 0.906 23 H 0.106 0.894 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.087 -7.694 2.031 8.536 hybrid contribution -0.241 1.166 0.445 1.272 sum 2.846 -6.528 2.477 7.540 Atomic orbital electron populations 1.70500 1.07227 1.27781 1.45653 1.25952 0.95896 1.03476 0.93788 0.85343 0.78140 0.77466 0.79150 1.19799 1.20839 1.18605 1.21207 0.94053 0.89364 1.54650 0.90349 1.19837 0.91595 0.92072 0.88371 0.96472 1.60148 1.07410 1.03716 1.59163 1.23397 0.98261 0.90712 0.94519 1.23598 1.01563 0.98148 0.96850 1.22648 1.02967 0.95152 0.95364 1.23012 1.01320 0.94752 0.97201 1.22729 0.79903 0.71828 0.87706 1.92973 1.74417 1.96109 1.55114 1.92972 1.81717 1.48657 1.97008 1.93364 1.69164 1.54867 1.96422 0.92475 0.82423 0.90573 0.89352 0.92110 0.89639 0.89463 0.91928 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.28 9.51 21.45 0.20 -49.07 15 2 C 0.01 0.71 5.20 84.65 0.44 1.15 15 3 Si 0.97 42.03 29.54 68.60 2.03 44.06 15 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 15 6 H -0.26 -10.66 7.11 99.48 0.71 -9.96 15 7 C -0.56 -29.30 8.32 25.60 0.21 -29.08 15 8 H 0.08 3.96 7.62 -2.91 -0.02 3.94 15 9 C 0.19 9.63 2.16 44.17 0.10 9.73 15 10 H 0.02 0.95 7.84 -2.39 -0.02 0.93 15 11 N -0.67 -27.90 6.34 -470.61 -2.98 -30.89 15 12 C 0.04 1.45 3.52 45.44 0.16 1.61 15 13 C -0.16 -4.55 7.70 31.12 0.24 -4.31 15 14 C -0.12 -2.84 8.08 31.12 0.25 -2.59 15 15 C -0.12 -3.52 7.88 31.12 0.25 -3.28 15 16 C 0.43 22.67 2.81 71.98 0.20 22.87 15 17 F -0.20 -10.80 16.94 44.97 0.76 -10.04 15 18 F -0.22 -10.72 15.30 44.97 0.69 -10.03 15 19 F -0.16 -8.90 12.93 44.97 0.58 -8.32 15 20 H 0.27 14.22 8.31 -92.71 -0.77 13.45 15 21 H 0.35 13.71 7.69 -89.69 -0.69 13.02 15 22 H 0.08 2.98 6.41 -2.38 -0.02 2.96 15 23 H 0.09 2.33 7.82 -2.38 -0.02 2.32 15 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.09 1.82 8.14 -2.38 -0.02 1.80 15 26 H 0.09 1.64 8.14 -2.39 -0.02 1.62 15 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 15 28 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 Total: -1.00 -58.23 243.95 3.61 -54.62 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.49 Total: 13.58 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 1.85 Total: -3.91 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -2.78 Total: -79.96 kcal Atomic # 9 Polarization: -30.42 SS G_CDS: 2.03 Total: -28.39 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -58.23 3.61 -54.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675058925.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.087 kcal (2) G-P(sol) polarization free energy of solvation -58.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds