Wall clock time and date at job start Mon Mar 30 2020 02:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81404 * 109.46946 * 2 1 4 4 C 1.76192 * 102.99967 * 180.02562 * 3 2 1 5 5 C 1.39099 * 120.03626 * 359.72473 * 4 3 2 6 6 C 1.38166 * 120.09721 * 179.75033 * 5 4 3 7 7 C 1.38138 * 120.16695 * 0.54737 * 6 5 4 8 8 C 1.39123 * 120.07320 * 359.70376 * 7 6 5 9 9 N 1.39305 * 120.05117 * 180.02562 * 8 7 6 10 10 C 1.36852 * 119.99658 * 359.97101 * 9 8 7 11 11 H 1.07999 * 120.00482 * 0.02562 * 10 9 8 12 12 C 1.38791 * 119.99842 * 179.97438 * 10 9 8 13 13 N 1.31601 * 119.99982 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00003 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47341 * 60.00229 * 14 12 10 16 16 H 1.48509 * 109.47128 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47085 * 300.00057 * 14 12 10 18 18 C 1.38769 * 120.03473 * 179.97438 * 4 3 2 19 19 H 1.09001 * 109.47194 * 299.99756 * 1 2 3 20 20 H 1.08992 * 109.47399 * 59.99928 * 1 2 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47398 * 120.00064 * 2 1 3 23 23 H 1.09001 * 109.47194 * 240.00244 * 2 1 3 24 24 H 1.07991 * 119.95071 * 0.02562 * 5 4 3 25 25 H 1.07992 * 119.91432 * 180.27636 * 6 5 4 26 26 H 1.07998 * 119.96189 * 179.72538 * 7 6 5 27 27 H 0.96999 * 119.99958 * 179.97438 * 9 8 7 28 28 H 0.97001 * 119.99879 * 179.97438 * 13 12 10 29 29 H 1.07996 * 120.08536 * 359.95481 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8853 1.5118 -0.0008 5 6 4.4415 0.2368 0.0046 6 6 5.8141 0.0796 -0.0012 7 6 6.6397 1.1872 -0.0009 8 6 6.0910 2.4657 -0.0011 9 7 6.9239 3.5823 -0.0013 10 6 8.2830 3.4220 -0.0009 11 1 8.7099 2.4300 -0.0007 12 6 9.1129 4.5345 -0.0017 13 7 8.5929 5.7434 -0.0024 14 14 10.9681 4.3158 -0.0018 15 1 11.3776 3.5620 -1.2138 16 1 11.6236 5.6484 -0.0021 17 1 11.3779 3.5633 1.2111 18 6 4.7108 2.6272 -0.0015 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 3.7994 -0.6315 0.0088 25 1 6.2427 -0.9116 -0.0015 26 1 7.7122 1.0605 -0.0010 27 1 6.5406 4.4733 -0.0018 28 1 9.1729 6.5209 -0.0026 29 1 4.2818 3.6183 -0.0023 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690116893.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:07 Heat of formation + Delta-G solvation = 14.644278 kcal Electronic energy + Delta-G solvation = -12361.598053 eV Core-core repulsion = 10182.206603 eV Total energy + Delta-G solvation = -2179.391450 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.28171 -35.03227 -32.85858 -31.89161 -30.01583 -28.11292 -24.71881 -23.66941 -21.66407 -20.83866 -17.73164 -17.08412 -15.75203 -15.12521 -14.78025 -14.76883 -14.12957 -13.85564 -13.14275 -12.71008 -12.56225 -12.27826 -11.82956 -11.64985 -11.56682 -11.24482 -10.78664 -10.69599 -10.43764 -10.34497 -10.07132 -9.56209 -8.96811 -8.63103 -7.04658 -6.64807 -6.58409 -3.77382 1.97727 2.25927 2.51348 2.93234 3.15090 3.15911 3.17049 4.03455 4.61187 4.94894 4.98911 5.19063 5.23514 5.36087 5.69837 5.75880 5.75921 5.98230 6.01464 6.29626 6.44962 6.78865 6.79740 7.18010 7.22932 7.42879 7.50016 7.68702 7.98453 8.73218 9.32073 9.51741 10.58238 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.069349 B = 0.005608 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.656524 B = 4991.435537 C = 5374.645867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 S -0.152 6.152 4 C -0.019 4.019 5 C -0.260 4.260 6 C -0.048 4.048 7 C -0.225 4.225 8 C 0.222 3.778 9 N -0.558 5.558 10 C -0.302 4.302 11 H 0.102 0.898 12 C 0.019 3.981 13 N -0.892 5.892 14 Si 0.933 3.067 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.272 1.272 18 C -0.218 4.218 19 H 0.063 0.937 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.116 0.884 27 H 0.400 0.600 28 H 0.275 0.725 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 -8.458 0.000 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.253 4.253 3 S 0.088 5.912 4 C -0.132 4.132 5 C -0.287 4.287 6 C -0.069 4.069 7 C -0.250 4.250 8 C 0.099 3.901 9 N -0.160 5.160 10 C -0.432 4.432 11 H 0.120 0.880 12 C -0.184 4.184 13 N -0.530 5.530 14 Si 0.759 3.241 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.248 4.248 19 H 0.082 0.918 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.102 0.898 23 H 0.102 0.898 24 H 0.118 0.882 25 H 0.122 0.878 26 H 0.134 0.866 27 H 0.235 0.765 28 H 0.085 0.915 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.179 -7.157 0.001 11.639 hybrid contribution 1.644 -0.730 -0.002 1.798 sum -7.535 -7.887 -0.001 10.908 Atomic orbital electron populations 1.21511 0.92590 1.02296 1.03002 1.23448 0.99445 0.97062 1.05360 1.85168 1.01202 1.11045 1.93742 1.20933 0.93643 0.96155 1.02508 1.20274 0.95223 0.94094 1.19143 1.20487 0.92749 0.97074 0.96560 1.20461 0.99262 0.90888 1.14428 1.17653 0.88982 0.88208 0.95301 1.41015 1.04909 1.05103 1.64930 1.19694 0.80974 0.94778 1.47708 0.88017 1.25307 1.01046 0.94616 0.97415 1.69683 1.36791 0.97855 1.48629 0.85879 0.81469 0.77672 0.79078 1.19742 1.20714 1.19745 1.19746 0.91260 0.96529 1.17305 0.91807 0.91800 0.91322 0.89770 0.89771 0.88242 0.87788 0.86588 0.76537 0.91461 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.92 37.16 0.37 -0.95 15 2 C -0.10 -1.31 5.05 37.16 0.19 -1.12 15 3 S -0.15 -2.51 21.92 -107.50 -2.36 -4.86 15 4 C -0.02 -0.38 6.11 -39.07 -0.24 -0.62 15 5 C -0.26 -4.89 9.36 -39.29 -0.37 -5.26 15 6 C -0.05 -0.91 10.03 -39.64 -0.40 -1.31 15 7 C -0.22 -4.91 9.30 -39.29 -0.37 -5.27 15 8 C 0.22 5.19 6.62 -83.87 -0.55 4.64 15 9 N -0.56 -14.09 5.43 -9.62 -0.05 -14.14 15 10 C -0.30 -7.83 9.56 -15.11 -0.14 -7.98 15 11 H 0.10 2.53 5.68 -52.49 -0.30 2.23 15 12 C 0.02 0.50 5.50 -17.45 -0.10 0.40 15 13 N -0.89 -24.12 13.05 55.49 0.72 -23.39 15 14 Si 0.93 19.95 29.55 -169.99 -5.02 14.93 15 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 18 C -0.22 -4.76 9.64 -39.12 -0.38 -5.13 15 19 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.07 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.08 1.03 7.74 -51.92 -0.40 0.63 15 23 H 0.08 1.03 7.76 -51.92 -0.40 0.62 15 24 H 0.10 1.62 5.87 -52.49 -0.31 1.31 15 25 H 0.10 1.68 8.06 -52.49 -0.42 1.26 15 26 H 0.12 2.51 5.95 -52.49 -0.31 2.20 15 27 H 0.40 10.26 7.90 -40.82 -0.32 9.94 15 28 H 0.28 7.04 8.31 -40.82 -0.34 6.70 15 29 H 0.11 2.29 8.06 -52.49 -0.42 1.87 15 LS Contribution 262.10 15.07 3.95 3.95 Total: -1.00 -27.09 262.10 -8.04 -35.13 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -3.29 Total: 10.99 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -1.99 Total: -22.60 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.67 Total: -37.53 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.36 Total: -4.86 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.09 -8.04 -35.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690116893.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.772 kcal (2) G-P(sol) polarization free energy of solvation -27.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds