Wall clock time and date at job start Mon Mar 30 2020 02:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 2 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 2 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 O 1.21223 * 120.00330 * 270.00098 * 12 2 1 14 14 C 1.47404 * 119.99770 * 90.00241 * 12 2 1 15 15 C 1.39630 * 119.71086 * 179.97438 * 14 12 2 16 16 C 1.38423 * 119.07656 * 179.97438 * 15 14 12 17 17 C 1.38928 * 118.48196 * 0.02562 * 16 15 14 18 18 F 1.35101 * 120.33021 * 179.97438 * 17 16 15 19 19 C 1.38994 * 119.33372 * 0.02562 * 17 16 15 20 20 N 1.31375 * 120.88052 * 359.71378 * 19 17 16 21 21 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 22 22 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 25 25 H 1.07996 * 120.46098 * 359.97438 * 15 14 12 26 26 H 1.07998 * 120.75884 * 180.02562 * 16 15 14 27 27 H 1.07998 * 119.56108 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 2.1467 -0.8526 3.5566 8 14 0.6299 1.2829 2.6540 9 1 -0.7974 0.8766 2.7062 10 1 0.9857 2.0024 3.9035 11 1 0.8478 2.1772 1.4887 12 6 2.0323 -0.7105 -1.2304 13 8 2.2344 -1.9054 -1.2003 14 6 2.2780 0.0475 -2.4705 15 6 2.7440 -0.6168 -3.6068 16 6 2.9698 0.1077 -4.7644 17 6 2.7229 1.4748 -4.7491 18 9 2.9309 2.2181 -5.8579 19 6 2.2606 2.0702 -3.5813 20 7 2.0503 1.3569 -2.4983 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.9153 -0.5190 4.4376 25 1 2.9257 -1.6811 -3.5828 26 1 3.3297 -0.3785 -5.6590 27 1 2.0671 3.1326 -3.5654 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703439527.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:35 Heat of formation + Delta-G solvation = -40.724094 kcal Electronic energy + Delta-G solvation = -14567.102233 eV Core-core repulsion = 11819.096654 eV Total energy + Delta-G solvation = -2748.005578 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 223.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.18928 -40.31305 -38.21918 -33.92008 -32.63819 -31.45098 -30.74650 -25.23567 -25.03062 -24.00396 -22.29303 -19.37058 -17.81688 -17.33416 -16.82178 -16.11102 -15.98943 -15.06974 -14.62789 -14.25354 -14.01679 -13.60895 -13.42553 -13.04593 -12.62243 -12.50970 -12.19031 -11.77820 -10.93786 -10.62324 -10.20519 -10.10729 -9.89676 -9.61231 -9.09446 -9.03121 -8.73029 -8.55441 -6.06188 -4.07077 0.43380 0.99093 2.67048 3.28576 3.39745 3.42251 3.79817 3.81907 4.10921 4.41342 4.42560 4.56353 4.70347 5.24362 5.26671 5.54401 5.58753 5.68762 6.08494 6.29095 6.40314 6.52825 6.56918 6.88902 7.20500 7.61057 7.65772 8.24696 8.50099 9.01880 9.52901 11.06602 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.044326 B = 0.007602 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.538478 B = 3682.444027 C = 4072.797110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.020 4.020 3 H 0.064 0.936 4 C -0.513 4.513 5 H 0.084 0.916 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.260 1.260 12 C 0.424 3.576 13 O -0.438 6.438 14 C 0.052 3.948 15 C -0.096 4.096 16 C -0.121 4.121 17 C 0.059 3.941 18 F -0.130 7.130 19 C 0.071 3.929 20 N -0.408 5.408 21 H 0.050 0.950 22 H 0.035 0.965 23 H 0.055 0.945 24 H 0.265 0.735 25 H 0.155 0.845 26 H 0.150 0.850 27 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 5.584 -16.152 17.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.040 4.040 3 H 0.082 0.918 4 C -0.551 4.551 5 H 0.102 0.898 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.713 3.287 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.185 1.185 12 C 0.298 3.702 13 O -0.308 6.308 14 C -0.084 4.084 15 C -0.116 4.116 16 C -0.147 4.147 17 C 0.037 3.963 18 F -0.109 7.109 19 C -0.091 4.091 20 N -0.119 5.119 21 H 0.069 0.931 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.173 0.827 26 H 0.168 0.832 27 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.691 5.311 -15.184 16.101 hybrid contribution -0.198 0.652 -0.864 1.100 sum -0.889 5.963 -16.048 17.143 Atomic orbital electron populations 1.21962 0.96597 1.01223 0.99549 1.19519 0.93598 0.98607 0.92237 0.91776 1.20894 1.32723 1.13677 0.87790 0.89829 1.24944 0.95654 0.96665 0.95637 1.69886 1.45360 1.40277 0.97917 0.86898 0.80610 0.83869 0.77316 1.20483 1.22360 1.18492 1.22795 0.72631 0.87824 0.86946 1.90429 1.39089 1.16769 1.84505 1.22576 0.98215 0.90745 0.96893 1.22312 0.95364 1.02483 0.91413 1.21630 1.00608 0.92247 1.00202 1.19158 1.02110 0.90319 0.84730 1.91520 1.92434 1.76312 1.50604 1.23078 0.97741 1.01370 0.86902 1.67838 1.11046 1.06701 1.26266 0.93139 0.94545 0.92624 0.92528 0.82688 0.83196 0.81122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.66 37.16 0.32 -2.64 15 2 C -0.02 -0.48 1.93 -92.92 -0.18 -0.66 15 3 H 0.06 1.53 6.66 -51.93 -0.35 1.18 15 4 C -0.51 -14.73 8.90 -34.44 -0.31 -15.04 15 5 H 0.08 2.66 7.38 -52.49 -0.39 2.28 15 6 C 0.07 2.11 5.45 -17.82 -0.10 2.02 15 7 N -0.90 -27.63 13.96 55.43 0.77 -26.85 15 8 Si 0.88 21.66 24.37 -169.99 -4.14 17.52 15 9 H -0.28 -6.61 6.88 56.52 0.39 -6.22 15 10 H -0.30 -7.27 7.11 56.52 0.40 -6.87 15 11 H -0.26 -6.04 6.52 56.52 0.37 -5.67 15 12 C 0.42 9.13 6.17 -30.58 -0.19 8.94 15 13 O -0.44 -10.26 15.92 5.61 0.09 -10.17 15 14 C 0.05 0.90 6.73 -83.14 -0.56 0.35 15 15 C -0.10 -1.33 9.63 -38.99 -0.38 -1.70 15 16 C -0.12 -1.35 10.15 -39.26 -0.40 -1.75 15 17 C 0.06 0.68 7.36 -39.05 -0.29 0.40 15 18 F -0.13 -1.43 17.28 2.25 0.04 -1.40 15 19 C 0.07 0.91 11.17 -17.47 -0.20 0.71 15 20 N -0.41 -6.73 9.43 -9.82 -0.09 -6.82 15 21 H 0.05 1.13 3.29 -51.93 -0.17 0.96 15 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.05 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 25 H 0.16 1.98 7.64 -52.49 -0.40 1.58 15 26 H 0.15 1.20 8.06 -52.49 -0.42 0.78 15 27 H 0.17 1.66 8.06 -52.49 -0.42 1.24 15 LS Contribution 243.30 15.07 3.67 3.67 Total: -1.00 -31.76 243.30 -4.11 -35.87 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -2.18 Total: -2.44 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.27 Total: -9.38 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.68 Total: -33.67 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.52 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.76 -4.11 -35.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703439527.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.855 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds