Wall clock time and date at job start Mon Mar 30 2020 02:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 2 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 2 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 O 1.21223 * 120.00330 * 270.00098 * 12 2 1 14 14 C 1.47404 * 119.99770 * 90.00241 * 12 2 1 15 15 C 1.39630 * 119.71086 * 179.97438 * 14 12 2 16 16 C 1.38423 * 119.07656 * 179.97438 * 15 14 12 17 17 C 1.38928 * 118.48196 * 0.02562 * 16 15 14 18 18 F 1.35101 * 120.33021 * 179.97438 * 17 16 15 19 19 C 1.38994 * 119.33372 * 0.02562 * 17 16 15 20 20 N 1.31375 * 120.88052 * 359.71378 * 19 17 16 21 21 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 22 22 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 25 25 H 1.07996 * 120.46098 * 359.97438 * 15 14 12 26 26 H 1.07998 * 120.75884 * 180.02562 * 16 15 14 27 27 H 1.07998 * 119.56108 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 2.1467 -0.8526 3.5566 8 14 0.6299 1.2829 2.6540 9 1 -0.7974 0.8766 2.7062 10 1 0.9857 2.0024 3.9035 11 1 0.8478 2.1772 1.4887 12 6 2.0323 -0.7105 -1.2304 13 8 2.2344 -1.9054 -1.2003 14 6 2.2780 0.0475 -2.4705 15 6 2.7440 -0.6168 -3.6068 16 6 2.9698 0.1077 -4.7644 17 6 2.7229 1.4748 -4.7491 18 9 2.9309 2.2181 -5.8579 19 6 2.2606 2.0702 -3.5813 20 7 2.0503 1.3569 -2.4983 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.9153 -0.5190 4.4376 25 1 2.9257 -1.6811 -3.5828 26 1 3.3297 -0.3785 -5.6590 27 1 2.0671 3.1326 -3.5654 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703439527.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:35 Heat of formation + Delta-G solvation = -62.818882 kcal Electronic energy + Delta-G solvation = -14568.060335 eV Core-core repulsion = 11819.096654 eV Total energy + Delta-G solvation = -2748.963680 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 223.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.10719 -41.55447 -39.76251 -35.88002 -33.83800 -33.25111 -32.07012 -27.17940 -26.56400 -25.05817 -23.79046 -20.94188 -18.98605 -18.74350 -18.27362 -17.75313 -16.98560 -16.87108 -15.87635 -15.80022 -15.34727 -14.88783 -14.81980 -14.51890 -14.14631 -13.99416 -13.65079 -13.63240 -12.82545 -12.60073 -12.11558 -11.51843 -11.24538 -11.11184 -11.06264 -10.75984 -10.28523 -10.10532 -8.30108 -6.37348 -0.73016 0.02041 1.23857 1.34436 1.40646 1.52480 2.34198 2.59950 2.70867 2.90484 3.05443 3.36010 3.67110 3.72969 4.09359 4.25479 4.51003 4.60310 4.66186 4.70180 4.74621 4.91488 5.09014 5.40098 5.41924 5.57195 6.20011 6.42563 6.69178 6.77354 7.27160 8.86983 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.044326 B = 0.007602 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.538478 B = 3682.444027 C = 4072.797110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.026 4.026 3 H 0.070 0.930 4 C -0.524 4.524 5 H 0.030 0.970 6 C 0.013 3.987 7 N -0.948 5.948 8 Si 0.952 3.048 9 H -0.262 1.262 10 H -0.296 1.296 11 H -0.234 1.234 12 C 0.423 3.577 13 O -0.475 6.475 14 C 0.022 3.978 15 C -0.089 4.089 16 C -0.105 4.105 17 C 0.077 3.923 18 F -0.119 7.119 19 C 0.073 3.927 20 N -0.434 5.434 21 H 0.047 0.953 22 H 0.071 0.929 23 H 0.046 0.954 24 H 0.268 0.732 25 H 0.160 0.840 26 H 0.189 0.811 27 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 7.992 -18.937 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.045 4.045 3 H 0.088 0.912 4 C -0.562 4.562 5 H 0.048 0.952 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.777 3.223 9 H -0.188 1.188 10 H -0.223 1.223 11 H -0.158 1.158 12 C 0.300 3.700 13 O -0.348 6.348 14 C -0.113 4.113 15 C -0.109 4.109 16 C -0.131 4.131 17 C 0.056 3.944 18 F -0.098 7.098 19 C -0.090 4.090 20 N -0.145 5.145 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.178 0.822 26 H 0.207 0.793 27 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.529 7.718 -17.996 19.641 hybrid contribution 0.164 -0.097 -0.128 0.230 sum -1.365 7.621 -18.124 19.708 Atomic orbital electron populations 1.21862 0.94691 1.01244 1.01026 1.19483 0.95232 0.98269 0.91545 0.91235 1.21092 1.32150 1.12470 0.90516 0.95165 1.25920 0.97183 1.00414 0.94889 1.70053 1.47390 1.42656 0.98713 0.85791 0.78925 0.79529 0.78035 1.18792 1.22322 1.15762 1.22731 0.71530 0.87503 0.88200 1.90404 1.40890 1.18135 1.85393 1.21804 1.02145 0.91368 0.95965 1.22341 0.94572 1.02880 0.91149 1.21950 0.98888 0.91962 1.00294 1.19153 1.00288 0.90468 0.84522 1.91563 1.92073 1.76117 1.50024 1.23534 0.96800 1.02429 0.86217 1.67705 1.12226 1.06332 1.28227 0.93440 0.91033 0.93471 0.92286 0.82214 0.79335 0.78086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 8.66 71.98 0.62 -4.93 15 2 C -0.03 -1.25 1.93 -12.29 -0.02 -1.27 15 3 H 0.07 3.26 6.66 -2.39 -0.02 3.25 15 4 C -0.52 -31.45 8.90 25.60 0.23 -31.22 15 5 H 0.03 2.07 7.38 -2.91 -0.02 2.05 15 6 C 0.01 0.78 5.45 84.66 0.46 1.24 15 7 N -0.95 -60.79 13.96 21.45 0.30 -60.49 15 8 Si 0.95 44.52 24.37 68.60 1.67 46.20 15 9 H -0.26 -11.54 6.88 99.48 0.68 -10.86 15 10 H -0.30 -13.72 7.11 99.48 0.71 -13.01 15 11 H -0.23 -9.92 6.52 99.48 0.65 -9.27 15 12 C 0.42 18.58 6.17 28.10 0.17 18.75 15 13 O -0.47 -23.31 15.92 -2.85 -0.05 -23.36 15 14 C 0.02 0.72 6.73 41.73 0.28 1.00 15 15 C -0.09 -2.29 9.63 22.65 0.22 -2.07 15 16 C -0.11 -1.91 10.15 22.48 0.23 -1.68 15 17 C 0.08 1.46 7.36 22.62 0.17 1.63 15 18 F -0.12 -2.04 17.28 44.97 0.78 -1.27 15 19 C 0.07 1.58 11.17 84.94 0.95 2.53 15 20 N -0.43 -13.27 9.43 -184.99 -1.75 -15.02 15 21 H 0.05 2.02 3.29 -2.39 -0.01 2.01 15 22 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 23 H 0.05 2.03 8.14 -2.39 -0.02 2.01 15 24 H 0.27 15.93 8.31 -92.71 -0.77 15.16 15 25 H 0.16 3.88 7.64 -2.91 -0.02 3.86 15 26 H 0.19 1.98 8.06 -2.91 -0.02 1.95 15 27 H 0.20 2.98 8.06 -2.91 -0.02 2.96 15 Total: -1.00 -72.72 243.30 5.38 -67.34 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.12 Total: 2.60 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 3.30 Total: -16.01 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -1.45 Total: -75.51 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.05 Total: -23.36 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.78 Total: -1.27 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.67 Total: 46.20 kcal Total: -72.72 5.38 -67.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703439527.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.526 kcal (2) G-P(sol) polarization free energy of solvation -72.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds