Wall clock time and date at job start Mon Mar 30 2020 02:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31369 * 1 3 3 Si 1.86802 * 119.99736 * 2 1 4 4 H 1.48496 * 109.47105 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46837 * 120.00516 * 3 2 1 6 6 H 1.48507 * 109.46769 * 240.00260 * 3 2 1 7 7 C 1.39041 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00341 * 180.44299 * 7 2 1 9 9 N 1.36881 * 120.00070 * 0.43771 * 7 2 1 10 10 C 1.34778 * 120.00272 * 204.24230 * 9 7 2 11 11 O 1.21572 * 120.00123 * 184.67223 * 10 9 7 12 12 C 1.47889 * 119.99826 * 4.67446 * 10 9 7 13 13 N 1.34230 * 126.70695 * 5.93980 * 12 10 9 14 14 N 1.28978 * 107.25257 * 179.97438 * 13 12 10 15 15 N 1.28724 * 109.00140 * 359.97438 * 14 13 12 16 16 H 0.97000 * 125.31158 * 179.97438 * 15 14 13 17 17 N 1.28867 * 109.36639 * 359.76481 * 15 14 13 18 18 C 1.46504 * 120.00107 * 24.24086 * 9 7 2 19 19 C 1.52996 * 117.49551 * 129.70855 * 18 9 7 20 20 C 1.53000 * 117.49550 * 61.08541 * 18 9 7 21 21 H 0.97000 * 120.00028 * 359.97438 * 1 2 3 22 22 H 1.09002 * 115.55070 * 275.41879 * 18 9 7 23 23 H 1.08994 * 117.50356 * 0.02562 * 19 18 9 24 24 H 1.09003 * 117.49874 * 145.02475 * 19 18 9 25 25 H 1.08998 * 117.49850 * 214.97792 * 20 18 9 26 26 H 1.09002 * 117.50099 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 1.2826 2.7464 0.0006 5 1 3.1014 1.6964 1.2125 6 1 3.1013 1.6965 -1.2126 7 6 2.0089 -1.2041 -0.0005 8 1 3.0889 -1.2042 0.0067 9 7 1.3246 -2.3895 -0.0101 10 6 1.9061 -3.5073 0.4682 11 8 1.3322 -4.5756 0.3824 12 6 3.2424 -3.4343 1.0976 13 7 3.9448 -2.3216 1.3624 14 7 5.0525 -2.6899 1.9110 15 7 5.0699 -3.9740 1.9991 16 1 5.7929 -4.5005 2.3745 17 7 3.9750 -4.4504 1.5145 18 6 -0.0401 -2.4433 -0.5403 19 6 -0.3548 -3.5282 -1.5722 20 6 -0.2426 -2.0662 -2.0092 21 1 -0.4850 0.8400 0.0004 22 1 -0.8284 -2.1725 0.1621 23 1 0.4533 -4.2021 -1.8563 24 1 -1.3503 -3.9715 -1.5488 25 1 -1.1643 -1.5476 -2.2732 26 1 0.6394 -1.7776 -2.5810 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706772265.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:05 Heat of formation + Delta-G solvation = 141.706858 kcal Electronic energy + Delta-G solvation = -15331.472320 eV Core-core repulsion = 12643.590254 eV Total energy + Delta-G solvation = -2687.882066 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 223.081 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.76481 -38.73334 -35.72757 -33.98325 -33.21012 -32.19365 -31.22494 -25.18059 -24.76807 -23.74272 -21.42778 -21.12261 -19.50636 -18.59868 -17.29645 -16.56765 -15.62421 -15.10226 -14.52286 -14.08875 -13.72081 -13.05498 -12.84974 -12.12686 -11.78047 -11.21316 -11.16692 -10.95271 -10.66133 -10.54080 -10.37929 -10.19172 -9.92516 -9.65221 -9.18204 -8.79749 -8.75371 -7.86630 -6.36695 -3.96170 1.59317 2.28745 2.74728 3.21621 3.24206 3.29662 3.93667 4.16996 4.24383 4.94300 5.02361 5.14313 5.35821 5.98694 6.06199 6.09384 6.23589 6.41948 6.61589 6.84562 6.89348 7.14802 7.33126 7.52007 7.69578 8.39564 8.74057 9.03869 9.35685 9.73118 10.62391 Molecular weight = 223.08amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.014396 C = 0.009242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.490601 B = 1944.514560 C = 3028.851460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.046 3.954 3 Si 0.927 3.073 4 H -0.284 1.284 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.327 4.327 8 H 0.124 0.876 9 N -0.380 5.380 10 C 0.523 3.477 11 O -0.581 6.581 12 C 0.178 3.822 13 N -0.225 5.225 14 N -0.081 5.081 15 N -0.241 5.241 16 H 0.467 0.533 17 N -0.275 5.275 18 C 0.147 3.853 19 C -0.198 4.198 20 C -0.154 4.154 21 H 0.271 0.729 22 H 0.118 0.882 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 -1.979 0.600 5.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.161 4.161 3 Si 0.753 3.247 4 H -0.210 1.210 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.456 4.456 8 H 0.141 0.859 9 N -0.096 5.096 10 C 0.308 3.692 11 O -0.464 6.464 12 C -0.105 4.105 13 N -0.100 5.100 14 N -0.077 5.077 15 N -0.086 5.086 16 H 0.320 0.680 17 N -0.129 5.129 18 C 0.043 3.957 19 C -0.236 4.236 20 C -0.192 4.192 21 H 0.082 0.918 22 H 0.135 0.865 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.031 -2.044 0.749 5.482 hybrid contribution 0.577 0.496 0.151 0.775 sum 5.608 -1.548 0.900 5.887 Atomic orbital electron populations 1.69916 1.06096 1.27904 1.45456 1.25398 0.95447 0.99902 0.95341 0.85972 0.79036 0.80163 0.79509 1.20975 1.19168 1.19779 1.20335 0.93251 0.81825 1.50178 0.85897 1.43006 1.12166 1.07065 1.47370 1.16024 0.82482 0.85371 0.85360 1.90688 1.63979 1.28658 1.63117 1.25675 0.99208 0.83914 1.01720 1.76663 0.97803 1.24118 1.11455 1.78908 1.18073 0.95183 1.15507 1.47851 1.14919 1.05651 1.40218 0.68031 1.75064 0.95875 1.26486 1.15524 1.21106 0.84607 0.99329 0.90672 1.23307 1.01795 0.92408 1.06134 1.22826 1.01910 0.95746 0.98716 0.91823 0.86504 0.89291 0.89734 0.89641 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.53 10.13 55.50 0.56 -20.97 15 2 C 0.05 1.15 5.28 -17.45 -0.09 1.06 15 3 Si 0.93 19.84 29.55 -169.99 -5.02 14.82 15 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 5 H -0.27 -5.78 7.11 56.52 0.40 -5.37 15 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 7 C -0.33 -8.37 8.41 -15.00 -0.13 -8.49 15 8 H 0.12 3.14 5.27 -52.49 -0.28 2.86 15 9 N -0.38 -9.73 2.93 -108.78 -0.32 -10.05 15 10 C 0.52 13.39 7.51 -12.31 -0.09 13.30 15 11 O -0.58 -15.64 15.60 5.30 0.08 -15.55 15 12 C 0.18 4.10 7.80 -156.21 -1.22 2.88 15 13 N -0.22 -4.99 9.26 32.09 0.30 -4.69 15 14 N -0.08 -1.48 13.46 60.35 0.81 -0.66 15 15 N -0.24 -3.68 7.90 60.35 0.48 -3.20 15 16 H 0.47 4.28 8.96 -340.33 -3.05 1.23 15 17 N -0.27 -5.44 12.40 32.10 0.40 -5.04 15 18 C 0.15 3.52 3.87 -67.93 -0.26 3.26 15 19 C -0.20 -4.20 9.25 -26.73 -0.25 -4.45 15 20 C -0.15 -3.29 9.34 -26.73 -0.25 -3.54 15 21 H 0.27 6.48 8.31 -40.82 -0.34 6.14 15 22 H 0.12 2.93 7.54 -51.93 -0.39 2.54 15 23 H 0.09 1.99 7.48 -51.93 -0.39 1.60 15 24 H 0.08 1.59 8.14 -51.93 -0.42 1.17 15 25 H 0.09 1.69 8.14 -51.93 -0.42 1.27 15 26 H 0.08 1.86 8.14 -51.93 -0.42 1.43 15 LS Contribution 236.01 15.07 3.56 3.56 Total: -1.00 -29.89 236.01 -5.96 -35.85 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.51 Total: 1.93 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -2.29 Total: 4.02 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 2.23 Total: -44.61 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.08 Total: -15.55 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.89 -5.96 -35.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706772265.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.557 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds