Wall clock time and date at job start Mon Mar 30 2020 03:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42903 * 109.50002 * 295.23892 * 3 2 1 5 5 C 1.53044 * 109.49874 * 175.14265 * 3 2 1 6 6 C 1.53038 * 109.53545 * 301.41618 * 5 3 2 7 7 C 1.53191 * 109.31364 * 298.63047 * 6 5 3 8 8 N 1.47207 * 108.85314 * 54.65605 * 7 6 5 9 9 C 1.34774 * 120.81279 * 126.33753 * 8 7 6 10 10 O 1.21689 * 119.99606 * 174.87870 * 9 8 7 11 11 C 1.46370 * 120.00261 * 354.87305 * 9 8 7 12 12 H 1.08000 * 119.99819 * 5.72936 * 11 9 8 13 13 C 1.40044 * 120.00272 * 185.72143 * 11 9 8 14 14 N 1.30676 * 119.99928 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00455 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46777 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47172 * 119.99983 * 15 13 11 18 18 H 1.48499 * 109.47118 * 240.00402 * 15 13 11 19 19 C 1.46923 * 118.55090 * 306.47686 * 8 7 6 20 20 H 4.38502 * 5.44228 * 179.97438 * 4 1 2 21 21 H 0.96708 * 113.99340 * 60.06591 * 4 3 2 22 22 H 1.09007 * 109.45450 * 61.43289 * 5 3 2 23 23 H 1.08995 * 109.46033 * 181.39225 * 5 3 2 24 24 H 1.08997 * 109.50065 * 58.58900 * 6 5 3 25 25 H 1.09002 * 109.49403 * 178.67881 * 6 5 3 26 26 H 1.08996 * 109.58634 * 174.42606 * 7 6 5 27 27 H 1.08999 * 109.58485 * 294.84662 * 7 6 5 28 28 H 0.97000 * 120.00154 * 179.97438 * 14 13 11 29 29 H 1.09004 * 109.58847 * 293.68177 * 19 8 7 30 30 H 1.09009 * 109.58396 * 173.40143 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1233 -0.5735 1.2185 5 6 3.1562 1.4384 -0.1222 6 6 2.6181 2.0646 -1.4107 7 6 3.1294 1.2663 -2.6140 8 7 2.7674 -0.1492 -2.4343 9 6 2.0903 -0.8153 -3.3905 10 8 1.8800 -2.0077 -3.2684 11 6 1.6079 -0.1047 -4.5756 12 1 1.8730 0.9310 -4.7294 13 6 0.8027 -0.7675 -5.5102 14 7 0.4816 -2.0205 -5.3240 15 14 0.1875 0.1392 -7.0231 16 1 0.6884 1.5370 -7.0001 17 1 0.6832 -0.5436 -8.2451 18 1 -1.2974 0.1450 -7.0271 19 6 3.1577 -0.8210 -1.1873 20 1 -1.0499 0.0001 0.0003 21 1 2.8394 -1.4870 1.3604 22 1 2.8138 2.0191 0.7344 23 1 4.2459 1.4361 -0.1470 24 1 1.5284 2.0447 -1.3974 25 1 2.9626 3.0960 -1.4853 26 1 2.6707 1.6468 -3.5266 27 1 4.2133 1.3603 -2.6809 28 1 -0.0764 -2.4796 -5.9711 29 1 4.2439 -0.8974 -1.1378 30 1 2.7195 -1.8187 -1.1572 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707971586.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:03 Heat of formation + Delta-G solvation = -55.628214 kcal Electronic energy + Delta-G solvation = -15597.583832 eV Core-core repulsion = 12972.392267 eV Total energy + Delta-G solvation = -2625.191565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.81571 -38.64627 -36.50848 -34.69574 -33.79544 -32.73580 -30.97055 -28.41380 -25.96589 -24.37325 -22.58189 -21.28183 -19.34219 -18.42745 -17.86082 -17.44874 -16.42335 -16.29264 -15.82745 -15.70250 -14.98383 -14.49675 -14.05216 -13.76162 -13.52259 -13.33735 -12.87796 -12.82375 -12.72377 -12.02070 -11.96606 -11.87736 -11.78209 -11.60294 -11.45938 -11.09646 -10.94897 -9.79844 -9.09105 -8.30033 -6.83829 1.38862 1.39665 1.57033 1.72494 1.80742 2.22353 2.45593 2.73782 3.25738 3.30862 3.57306 3.91446 3.91571 4.16776 4.33227 4.47833 4.64260 4.77905 4.88426 4.89093 5.03091 5.03885 5.12989 5.40101 5.41146 5.74326 6.12524 6.33242 6.59416 6.62341 6.87858 7.40594 8.45929 8.66813 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.037739 B = 0.009025 C = 0.008541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.751563 B = 3101.909766 C = 3277.602100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.228 4.228 3 C 0.234 3.766 4 O -0.550 6.550 5 C -0.092 4.092 6 C -0.124 4.124 7 C 0.110 3.890 8 N -0.637 5.637 9 C 0.544 3.456 10 O -0.633 6.633 11 C -0.566 4.566 12 H 0.096 0.904 13 C 0.028 3.972 14 N -0.824 5.824 15 Si 0.994 3.006 16 H -0.243 1.243 17 H -0.270 1.270 18 H -0.270 1.270 19 C 0.103 3.897 20 H 0.239 0.761 21 H 0.391 0.609 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.047 0.953 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.273 0.727 29 H 0.077 0.923 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.040 9.481 6.968 12.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.228 4.228 3 C 0.192 3.808 4 O -0.357 6.357 5 C -0.130 4.130 6 C -0.163 4.163 7 C -0.012 4.012 8 N -0.375 5.375 9 C 0.350 3.650 10 O -0.520 6.520 11 C -0.602 4.602 12 H 0.113 0.887 13 C -0.186 4.186 14 N -0.453 5.453 15 Si 0.813 3.187 16 H -0.166 1.166 17 H -0.195 1.195 18 H -0.195 1.195 19 C -0.022 4.022 20 H 0.255 0.745 21 H 0.241 0.759 22 H 0.099 0.901 23 H 0.113 0.887 24 H 0.066 0.934 25 H 0.131 0.869 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.145 9.270 7.069 12.074 hybrid contribution -0.960 -0.909 -0.639 1.468 sum 2.185 8.361 6.430 10.771 Atomic orbital electron populations 1.25672 0.96965 0.99445 0.99060 1.24172 0.95900 1.01461 1.01283 1.18503 0.81866 0.96155 0.84239 1.86505 1.76191 1.33707 1.39251 1.21442 1.02070 0.90640 0.98815 1.21919 1.00544 1.00518 0.93286 1.21814 0.99785 0.80250 0.99367 1.48008 1.60472 1.12174 1.16833 1.18645 0.76779 0.86024 0.83511 1.90535 1.62876 1.17848 1.80767 1.21522 1.33362 0.99443 1.05912 0.88666 1.26989 0.94274 0.95169 1.02200 1.70203 1.28367 1.11995 1.34766 0.85025 0.78164 0.79524 0.75965 1.16558 1.19499 1.19507 1.21819 0.99317 0.96278 0.84775 0.74473 0.75901 0.90051 0.88744 0.93406 0.86939 0.89694 0.91013 0.91711 0.90452 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.93 19.25 74.32 1.43 -5.50 16 2 C -0.23 -8.57 10.47 31.12 0.33 -8.24 16 3 C 0.23 7.91 1.09 -12.52 -0.01 7.89 16 4 O -0.55 -16.21 12.96 -148.98 -1.93 -18.14 16 5 C -0.09 -2.55 5.06 30.62 0.15 -2.39 16 6 C -0.12 -3.54 5.84 30.67 0.18 -3.36 16 7 C 0.11 3.88 6.36 86.31 0.55 4.43 16 8 N -0.64 -29.18 2.68 -823.28 -2.21 -31.39 16 9 C 0.54 31.84 7.62 86.36 0.66 32.50 16 10 O -0.63 -42.99 14.48 -4.31 -0.06 -43.05 16 11 C -0.57 -31.81 8.88 24.83 0.22 -31.59 16 12 H 0.10 4.75 5.66 -2.91 -0.02 4.73 16 13 C 0.03 1.58 5.50 85.30 0.47 2.05 16 14 N -0.82 -50.64 11.84 21.83 0.26 -50.38 16 15 Si 0.99 40.64 29.56 68.60 2.03 42.67 16 16 H -0.24 -9.03 7.11 99.48 0.71 -8.32 16 17 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 18 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 19 C 0.10 4.15 5.40 86.36 0.47 4.62 16 20 H 0.24 6.65 7.80 -4.42 -0.03 6.62 16 21 H 0.39 9.43 9.03 -74.05 -0.67 8.76 16 22 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 23 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.05 1.58 7.14 -2.39 -0.02 1.56 16 25 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.08 3.16 5.33 -2.39 -0.01 3.15 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.27 15.19 8.29 -92.71 -0.77 14.43 16 29 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.05 2.43 7.03 -2.38 -0.02 2.41 16 Total: -1.00 -78.08 259.31 3.02 -75.07 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.49 Total: 24.84 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 4.44 Total: 0.39 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -1.95 Total: -81.77 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: -1.99 Total: -61.19 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -78.08 3.02 -75.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707971586.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.437 kcal (2) G-P(sol) polarization free energy of solvation -78.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds