Wall clock time and date at job start Mon Mar 30 2020 03:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 110.91553 * 2 1 4 4 F 1.39897 * 109.46984 * 183.90038 * 3 2 1 5 5 F 1.39903 * 109.46767 * 303.89830 * 3 2 1 6 6 F 1.39898 * 109.47256 * 63.89625 * 3 2 1 7 7 C 1.55158 * 111.00030 * 123.89474 * 2 1 3 8 8 C 1.54331 * 102.93918 * 82.57617 * 7 2 1 9 9 N 1.47015 * 107.27254 * 22.18949 * 8 7 2 10 10 C 1.36938 * 125.65129 * 181.02185 * 9 8 7 11 11 H 1.07999 * 120.00325 * 180.02562 * 10 9 8 12 12 C 1.38815 * 119.99817 * 0.02982 * 10 9 8 13 13 N 1.31621 * 119.99673 * 359.71804 * 12 10 9 14 14 Si 1.86795 * 120.00115 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47274 * 89.99913 * 14 12 10 16 16 H 1.48505 * 109.47015 * 209.99478 * 14 12 10 17 17 H 1.48498 * 109.47362 * 329.99904 * 14 12 10 18 18 C 1.47428 * 108.70459 * 1.28722 * 9 8 7 19 19 H 1.09001 * 109.47285 * 296.10515 * 1 2 3 20 20 H 1.08998 * 109.46673 * 56.10076 * 1 2 3 21 21 H 1.08993 * 109.46733 * 176.10182 * 1 2 3 22 22 H 1.08994 * 110.72229 * 324.21319 * 7 2 1 23 23 H 1.09001 * 110.72212 * 200.93363 * 7 2 1 24 24 H 1.08998 * 109.87873 * 262.76829 * 8 7 2 25 25 H 1.08998 * 109.87936 * 141.61135 * 8 7 2 26 26 H 0.97000 * 120.00043 * 180.02562 * 13 12 10 27 27 H 1.09002 * 110.36351 * 94.48017 * 18 9 8 28 28 H 1.08994 * 110.37194 * 216.80417 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0763 1.4292 0.0000 4 9 3.4719 1.3950 -0.0897 5 9 1.5555 2.1274 -1.0948 6 9 1.7007 2.0720 1.1844 7 6 2.0861 -0.8078 1.2024 8 6 2.0285 -2.2646 0.6962 9 7 2.0139 -2.2160 -0.7731 10 6 1.9461 -3.3001 -1.6069 11 1 1.9416 -3.1585 -2.6776 12 6 1.8831 -4.5811 -1.0760 13 7 1.8942 -4.7540 0.2288 14 14 1.7899 -6.0600 -2.2133 15 1 3.1632 -6.5274 -2.5311 16 1 1.0377 -7.1520 -1.5447 17 1 1.0949 -5.6764 -3.4683 18 6 2.0908 -0.8070 -1.2003 19 1 -0.3634 0.4522 0.9228 20 1 -0.3632 0.5732 -0.8530 21 1 -0.3632 -1.0252 -0.0699 22 1 1.4523 -0.6790 2.0797 23 1 3.1133 -0.5159 1.4211 24 1 1.1219 -2.7479 1.0602 25 1 2.9063 -2.8115 1.0404 26 1 1.8505 -5.6492 0.5998 27 1 3.1254 -0.5267 -1.3986 28 1 1.4766 -0.6450 -2.0859 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708706618.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:31 Heat of formation + Delta-G solvation = -152.843772 kcal Electronic energy + Delta-G solvation = -16345.115114 eV Core-core repulsion = 13173.851226 eV Total energy + Delta-G solvation = -3171.263888 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -51.08742 -48.57135 -48.53916 -39.72016 -35.20188 -32.37675 -30.49487 -27.92018 -27.16047 -25.23663 -22.22891 -21.10145 -19.39769 -19.30770 -18.93916 -17.85475 -16.69934 -16.09794 -15.66629 -15.39279 -15.28545 -15.00129 -14.75084 -14.72770 -14.60081 -14.36270 -13.87032 -13.31405 -13.09444 -13.01064 -12.69309 -12.64530 -12.04372 -11.98074 -11.80094 -11.72038 -11.61552 -10.71294 -8.94508 -7.86746 -5.23042 1.48394 1.49639 1.58420 1.75583 2.48378 2.79550 2.91594 3.09820 3.34127 3.60729 3.82711 3.88870 3.94757 4.47026 4.54930 4.69579 4.80270 4.87584 4.94844 4.95421 5.25570 5.43914 5.59124 5.72826 6.16001 7.07683 7.72336 8.36127 9.23858 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.054735 B = 0.008266 C = 0.007999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.431505 B = 3386.493725 C = 3499.689506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 C 0.473 3.527 4 F -0.187 7.187 5 F -0.182 7.182 6 F -0.179 7.179 7 C -0.121 4.121 8 C 0.190 3.810 9 N -0.619 5.619 10 C -0.245 4.245 11 H 0.085 0.915 12 C -0.061 4.061 13 N -0.950 5.950 14 Si 0.980 3.020 15 H -0.288 1.288 16 H -0.294 1.294 17 H -0.268 1.268 18 C 0.145 3.855 19 H 0.082 0.918 20 H 0.075 0.925 21 H 0.063 0.937 22 H 0.098 0.902 23 H 0.074 0.926 24 H 0.024 0.976 25 H 0.012 0.988 26 H 0.248 0.752 27 H 0.030 0.970 28 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 11.497 0.681 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.121 4.121 3 C 0.418 3.582 4 F -0.168 7.168 5 F -0.163 7.163 6 F -0.160 7.160 7 C -0.159 4.159 8 C 0.065 3.935 9 N -0.345 5.345 10 C -0.373 4.373 11 H 0.102 0.898 12 C -0.255 4.255 13 N -0.598 5.598 14 Si 0.808 3.192 15 H -0.215 1.215 16 H -0.220 1.220 17 H -0.193 1.193 18 C 0.019 3.981 19 H 0.101 0.899 20 H 0.094 0.906 21 H 0.082 0.918 22 H 0.116 0.884 23 H 0.093 0.907 24 H 0.043 0.957 25 H 0.030 0.970 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.746 11.312 0.685 11.466 hybrid contribution 0.289 -0.820 -0.387 0.952 sum -1.457 10.492 0.298 10.597 Atomic orbital electron populations 1.21643 0.89341 1.03577 1.03689 1.23024 0.99960 0.88379 1.00762 1.20207 0.75377 0.89271 0.73334 1.93145 1.30914 1.96836 1.95920 1.93151 1.86536 1.81609 1.55013 1.93154 1.91131 1.83979 1.47757 1.22924 1.01452 0.95245 0.96288 1.20890 0.98567 0.91116 0.82932 1.44621 1.86807 1.00570 1.02505 1.19445 1.43266 0.84888 0.89749 0.89756 1.25630 1.02280 1.00059 0.97497 1.70154 1.57846 1.20956 1.10848 0.85061 0.77360 0.78772 0.78011 1.21474 1.22030 1.19267 1.21683 0.97810 0.84314 0.94292 0.89899 0.90570 0.91775 0.88361 0.90738 0.95732 0.96982 0.94241 0.95241 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 8.35 71.98 0.60 -3.10 15 2 C -0.12 -3.93 0.48 -50.71 -0.02 -3.96 15 3 C 0.47 14.04 2.34 71.98 0.17 14.21 15 4 F -0.19 -5.91 15.74 44.97 0.71 -5.20 15 5 F -0.18 -5.22 16.63 44.97 0.75 -4.47 15 6 F -0.18 -4.95 16.90 44.97 0.76 -4.19 15 7 C -0.12 -4.29 5.68 31.79 0.18 -4.11 15 8 C 0.19 9.07 5.05 86.73 0.44 9.51 15 9 N -0.62 -30.97 3.38 -691.56 -2.34 -33.30 15 10 C -0.24 -13.42 10.28 84.03 0.86 -12.56 15 11 H 0.08 4.41 7.83 -2.91 -0.02 4.39 15 12 C -0.06 -3.42 5.49 84.86 0.47 -2.95 15 13 N -0.95 -55.83 10.31 21.65 0.22 -55.60 15 14 Si 0.98 44.92 29.55 68.60 2.03 46.95 15 15 H -0.29 -13.08 7.11 99.48 0.71 -12.37 15 16 H -0.29 -13.54 7.11 99.48 0.71 -12.83 15 17 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 18 C 0.14 5.81 6.07 86.93 0.53 6.34 15 19 H 0.08 2.05 8.08 -2.39 -0.02 2.03 15 20 H 0.08 2.00 7.69 -2.39 -0.02 1.99 15 21 H 0.06 2.23 7.91 -2.39 -0.02 2.21 15 22 H 0.10 3.01 8.04 -2.39 -0.02 2.99 15 23 H 0.07 2.54 7.55 -2.39 -0.02 2.53 15 24 H 0.02 1.29 7.39 -2.39 -0.02 1.27 15 25 H 0.01 0.65 7.50 -2.39 -0.02 0.63 15 26 H 0.25 14.22 8.31 -92.71 -0.77 13.45 15 27 H 0.03 1.21 7.25 -2.39 -0.02 1.19 15 28 H 0.06 2.24 8.06 -2.39 -0.02 2.22 15 Total: -1.00 -60.17 243.19 6.51 -53.65 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: 1.16 Total: -1.21 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 3.22 Total: 3.37 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -2.11 Total: -88.91 kcal Atomic # 9 Polarization: -16.07 SS G_CDS: 2.22 Total: -13.86 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -60.17 6.51 -53.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708706618.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.190 kcal (2) G-P(sol) polarization free energy of solvation -60.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds