Wall clock time and date at job start Mon Mar 30 2020 02:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99742 * 2 1 4 4 H 1.48503 * 109.46786 * 270.00175 * 3 2 1 5 5 H 1.48500 * 109.47185 * 29.99605 * 3 2 1 6 6 H 1.48497 * 109.47402 * 150.00153 * 3 2 1 7 7 C 1.37879 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99742 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00152 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.50479 * 59.99831 * 9 7 2 11 11 C 1.53121 * 109.53552 * 299.89637 * 9 7 2 12 12 C 1.53114 * 109.15992 * 182.38502 * 11 9 7 13 13 C 1.53036 * 109.28047 * 57.65972 * 12 11 9 14 14 N 1.46844 * 109.52085 * 300.81827 * 13 12 11 15 15 C 1.46847 * 111.19784 * 61.73796 * 14 13 12 16 16 H 1.09004 * 109.46099 * 58.28030 * 15 14 13 17 17 C 1.53008 * 109.46327 * 178.23846 * 15 14 13 18 18 F 1.39895 * 109.47188 * 180.02562 * 17 15 14 19 19 F 1.39893 * 109.47444 * 300.06090 * 17 15 14 20 20 F 1.39907 * 109.46336 * 60.05930 * 17 15 14 21 21 H 0.97000 * 120.00344 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.52397 * 302.29585 * 11 9 7 23 23 H 1.09007 * 109.51903 * 62.47734 * 11 9 7 24 24 H 1.09002 * 109.50460 * 297.71044 * 12 11 9 25 25 H 1.09006 * 109.53560 * 177.62018 * 12 11 9 26 26 H 1.08993 * 109.46063 * 180.80377 * 13 12 11 27 27 H 1.08999 * 109.45181 * 60.82626 * 13 12 11 28 28 H 1.00899 * 111.00308 * 185.83569 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6246 -2.5577 -0.8895 11 6 0.3717 -2.5827 1.2512 12 6 -0.3438 -3.9362 1.2729 13 6 0.6963 -5.0583 1.2387 14 7 1.5114 -4.9348 0.0235 15 6 2.2450 -3.6629 0.0031 16 1 2.8804 -3.5959 0.8863 17 6 3.1128 -3.5949 -1.2552 18 9 3.8122 -2.3835 -1.2745 19 9 4.0214 -4.6587 -1.2530 20 9 2.2976 -3.6802 -2.3889 21 1 -0.4851 0.8400 -0.0004 22 1 0.9937 -2.4851 2.1410 23 1 -0.3662 -1.7807 1.2318 24 1 -0.9956 -4.0173 0.4030 25 1 -0.9390 -4.0193 2.1824 26 1 0.1895 -6.0232 1.2396 27 1 1.3388 -4.9845 2.1160 28 1 2.1416 -5.7172 -0.0703 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709954334.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:10 Heat of formation + Delta-G solvation = -162.276257 kcal Electronic energy + Delta-G solvation = -16614.199774 eV Core-core repulsion = 13442.526863 eV Total energy + Delta-G solvation = -3171.672911 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.25283 -46.83213 -46.61133 -37.93023 -33.23956 -31.33877 -30.31452 -25.90816 -24.48960 -22.20456 -21.21281 -19.01151 -17.51459 -17.41994 -17.38370 -16.17706 -15.04463 -14.49078 -14.04278 -13.71631 -13.45116 -13.12116 -13.00848 -12.93203 -12.84031 -12.80969 -12.48729 -12.12461 -11.39693 -10.95836 -10.77191 -10.70221 -10.28997 -9.91295 -9.70425 -9.35924 -8.75560 -8.37915 -8.08482 -6.02507 -4.08428 3.31744 3.38186 3.41763 3.59015 4.29409 4.45388 4.77714 4.96867 5.27600 5.33687 5.57606 5.71268 5.90297 5.96567 6.18187 6.30371 6.55653 6.70322 6.97292 7.19911 7.29747 7.67249 7.71564 7.86776 8.03816 8.30193 8.94808 9.57217 11.04157 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.026693 B = 0.014117 C = 0.010216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.701127 B = 1982.880053 C = 2740.201723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.059 3.941 10 H 0.047 0.953 11 C -0.108 4.108 12 C -0.123 4.123 13 C 0.069 3.931 14 N -0.683 5.683 15 C 0.055 3.945 16 H 0.065 0.935 17 C 0.461 3.539 18 F -0.165 7.165 19 F -0.208 7.208 20 F -0.178 7.178 21 H 0.260 0.740 22 H 0.034 0.966 23 H 0.099 0.901 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 -7.734 1.522 8.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.093 0.907 9 C 0.040 3.960 10 H 0.065 0.935 11 C -0.146 4.146 12 C -0.161 4.161 13 C -0.060 4.060 14 N -0.315 5.315 15 C -0.056 4.056 16 H 0.083 0.917 17 C 0.407 3.593 18 F -0.146 7.146 19 F -0.190 7.190 20 F -0.159 7.159 21 H 0.070 0.930 22 H 0.053 0.947 23 H 0.117 0.883 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.106 -7.369 1.121 7.745 hybrid contribution 1.322 0.697 0.447 1.560 sum 3.427 -6.672 1.569 7.663 Atomic orbital electron populations 1.69888 1.05923 1.26551 1.50314 1.24905 0.94765 0.99092 0.94721 0.86580 0.79850 0.83311 0.78225 1.20592 1.21306 1.19859 1.21583 0.94066 0.90067 1.51358 0.90698 1.18776 0.91887 0.88780 0.96527 0.93488 1.21635 0.99997 0.95285 0.97686 1.21743 0.97370 0.96220 1.00737 1.21883 0.95424 0.99366 0.89290 1.60186 1.27766 1.02833 1.40680 1.22913 0.96601 0.94467 0.91612 0.91684 1.20583 0.78836 0.72821 0.87088 1.93166 1.80158 1.44698 1.96595 1.93076 1.70361 1.58512 1.97060 1.93132 1.72622 1.95833 1.54339 0.92962 0.94681 0.88312 0.91749 0.93018 0.91427 0.95592 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.85 11.36 55.43 0.63 -24.22 15 2 C 0.07 1.82 5.31 -17.82 -0.09 1.73 15 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 15 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.53 -14.18 7.42 -34.44 -0.26 -14.43 15 8 H 0.08 1.98 5.51 -52.48 -0.29 1.69 15 9 C 0.06 1.43 1.67 -91.69 -0.15 1.28 15 10 H 0.05 1.29 7.78 -51.93 -0.40 0.88 15 11 C -0.11 -2.44 5.03 -26.61 -0.13 -2.57 15 12 C -0.12 -2.26 6.09 -26.65 -0.16 -2.42 15 13 C 0.07 1.12 6.55 -3.84 -0.03 1.09 15 14 N -0.68 -12.15 6.43 -106.76 -0.69 -12.84 15 15 C 0.06 1.13 2.05 -67.72 -0.14 0.99 15 16 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 17 C 0.46 9.52 2.80 37.16 0.10 9.63 15 18 F -0.16 -3.68 13.83 2.25 0.03 -3.65 15 19 F -0.21 -3.81 16.75 2.25 0.04 -3.77 15 20 F -0.18 -3.88 16.71 2.25 0.04 -3.84 15 21 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 22 H 0.03 0.78 8.14 -51.93 -0.42 0.35 15 23 H 0.10 2.50 6.16 -51.93 -0.32 2.18 15 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 15 28 H 0.33 5.15 8.29 -39.29 -0.33 4.82 15 LS Contribution 237.74 15.07 3.58 3.58 Total: -1.00 -27.46 237.74 -5.26 -32.71 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.01 Total: 0.49 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.86 Total: -4.71 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.06 Total: -37.06 kcal Atomic # 9 Polarization: -11.37 SS G_CDS: 0.11 Total: -11.27 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.46 -5.26 -32.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709954334.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.562 kcal (2) G-P(sol) polarization free energy of solvation -27.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds