Wall clock time and date at job start Mon Mar 30 2020 02:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47124 * 271.78786 * 3 2 1 5 5 H 1.48488 * 109.47205 * 31.79468 * 3 2 1 6 6 H 1.48508 * 109.46736 * 151.79579 * 3 2 1 7 7 C 1.37876 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00000 * 5.48308 * 7 2 1 9 9 C 1.50696 * 119.99794 * 185.48422 * 7 2 1 10 10 H 1.09001 * 109.53930 * 335.40438 * 9 7 2 11 11 C 1.53124 * 109.50509 * 95.50590 * 9 7 2 12 12 C 1.53122 * 109.15717 * 62.28358 * 11 9 7 13 13 C 1.53040 * 109.28105 * 57.65958 * 12 11 9 14 14 N 1.46850 * 109.52129 * 300.81729 * 13 12 11 15 15 C 1.46852 * 111.19719 * 61.73910 * 14 13 12 16 16 H 1.09007 * 109.45282 * 58.27201 * 15 14 13 17 17 C 1.53001 * 109.46018 * 178.24151 * 15 14 13 18 18 F 1.39904 * 109.46781 * 180.02562 * 17 15 14 19 19 F 1.39895 * 109.47173 * 60.05923 * 17 15 14 20 20 F 1.39896 * 109.47052 * 300.05158 * 17 15 14 21 21 H 0.97003 * 120.00049 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.52394 * 182.19058 * 11 9 7 23 23 H 1.09000 * 109.52124 * 302.38443 * 11 9 7 24 24 H 1.09004 * 109.49975 * 177.59620 * 12 11 9 25 25 H 1.09001 * 109.50550 * 297.67325 * 12 11 9 26 26 H 1.08996 * 109.46052 * 60.83059 * 13 12 11 27 27 H 1.08994 * 109.46067 * 180.81495 * 13 12 11 28 28 H 1.00904 * 110.99851 * 297.64630 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4587 2.0683 -1.3994 5 1 1.4661 2.6414 0.7376 6 1 3.5652 1.4295 0.6617 7 6 2.0045 -1.1940 -0.0005 8 1 1.4682 -2.1272 -0.0903 9 6 3.5063 -1.1970 0.1242 10 1 3.9031 -0.2442 -0.2262 11 6 3.8972 -1.4057 1.5899 12 6 3.3878 -2.7723 2.0562 13 6 3.9717 -3.8634 1.1558 14 7 3.5689 -3.6194 -0.2351 15 6 4.0868 -2.3337 -0.7202 16 1 5.1739 -2.3269 -0.6404 17 6 3.6819 -2.1403 -2.1829 18 9 4.1757 -0.9157 -2.6454 19 9 2.2868 -2.1485 -2.2856 20 9 4.2126 -3.1792 -2.9550 21 1 -0.4850 0.8401 0.0004 22 1 4.9822 -1.3691 1.6863 23 1 3.4495 -0.6222 2.2013 24 1 3.6999 -2.9449 3.0862 25 1 2.2996 -2.7947 1.9971 26 1 5.0593 -3.8492 1.2268 27 1 3.5995 -4.8364 1.4762 28 1 2.5659 -3.6659 -0.3345 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709954337.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:12 Heat of formation + Delta-G solvation = -163.373491 kcal Electronic energy + Delta-G solvation = -16866.961610 eV Core-core repulsion = 13695.241120 eV Total energy + Delta-G solvation = -3171.720491 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.13328 -46.73019 -46.46524 -38.37052 -32.82327 -31.30151 -30.75923 -26.12615 -24.43989 -22.40708 -21.31437 -19.40801 -17.46204 -17.31749 -17.02753 -16.63320 -14.73778 -14.22502 -14.08247 -13.61157 -13.55898 -13.26052 -13.12090 -13.02594 -12.70346 -12.62820 -12.43354 -12.27832 -11.58597 -11.34827 -10.98127 -10.58855 -10.39745 -10.37964 -9.84073 -9.68494 -9.02782 -8.58287 -7.83353 -6.14988 -4.14246 3.24537 3.32003 3.34963 3.65895 4.35304 4.49962 4.78799 5.06966 5.17131 5.37236 5.50381 5.72498 5.81532 5.93457 5.99207 6.11330 6.28394 6.44177 6.69840 6.78360 6.99193 7.04424 7.38223 7.59234 7.84705 8.34766 8.85210 9.46418 10.97264 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.024772 B = 0.016967 C = 0.012792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.034915 B = 1649.854180 C = 2188.320806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.081 3.919 3 Si 0.866 3.134 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.081 0.919 9 C -0.024 4.024 10 H 0.047 0.953 11 C -0.103 4.103 12 C -0.148 4.148 13 C 0.067 3.933 14 N -0.675 5.675 15 C 0.058 3.942 16 H 0.093 0.907 17 C 0.461 3.539 18 F -0.194 7.194 19 F -0.156 7.156 20 F -0.197 7.197 21 H 0.264 0.736 22 H 0.033 0.967 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.996 -4.094 0.514 8.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.122 4.122 3 Si 0.694 3.306 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.099 0.901 9 C -0.044 4.044 10 H 0.065 0.935 11 C -0.141 4.141 12 C -0.187 4.187 13 C -0.063 4.063 14 N -0.307 5.307 15 C -0.054 4.054 16 H 0.111 0.889 17 C 0.407 3.593 18 F -0.175 7.175 19 F -0.137 7.137 20 F -0.179 7.179 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.317 -4.354 0.202 9.390 hybrid contribution -0.272 1.730 0.247 1.768 sum 8.045 -2.624 0.449 8.474 Atomic orbital electron populations 1.69884 1.06208 1.26969 1.49652 1.24924 0.94595 0.98632 0.94040 0.87003 0.80455 0.84313 0.78872 1.19986 1.21428 1.18802 1.20768 0.88029 0.95005 1.51265 0.90112 1.19901 0.98473 0.93974 0.92074 0.93467 1.21653 0.97183 0.96841 0.98442 1.22120 1.02714 0.95904 0.97991 1.21892 0.99734 0.97840 0.86785 1.60779 1.19740 1.29368 1.20818 1.22616 1.00239 0.93508 0.89057 0.88927 1.20422 0.76077 0.72639 0.90199 1.93096 1.87975 1.45828 1.90622 1.93281 1.28046 1.95824 1.96557 1.93108 1.86653 1.59436 1.78661 0.92594 0.94861 0.92334 0.93264 0.90277 0.91858 0.91128 0.82282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.96 55.43 0.77 -25.32 15 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 15 3 Si 0.87 20.98 27.23 -169.99 -4.63 16.35 15 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.26 -6.04 6.47 56.52 0.37 -5.67 15 7 C -0.51 -13.05 5.11 -34.44 -0.18 -13.22 15 8 H 0.08 2.21 6.16 -52.48 -0.32 1.88 15 9 C -0.02 -0.52 1.67 -91.69 -0.15 -0.67 15 10 H 0.05 1.08 4.77 -51.93 -0.25 0.83 15 11 C -0.10 -1.99 5.50 -26.60 -0.15 -2.14 15 12 C -0.15 -2.55 5.82 -26.65 -0.16 -2.71 15 13 C 0.07 1.05 6.55 -3.83 -0.03 1.02 15 14 N -0.68 -12.24 6.38 -106.75 -0.68 -12.92 15 15 C 0.06 1.12 2.30 -67.72 -0.16 0.97 15 16 H 0.09 1.62 8.14 -51.92 -0.42 1.20 15 17 C 0.46 9.52 2.79 37.16 0.10 9.63 15 18 F -0.19 -4.07 16.81 2.25 0.04 -4.03 15 19 F -0.16 -3.64 14.04 2.25 0.03 -3.61 15 20 F -0.20 -3.82 17.24 2.25 0.04 -3.78 15 21 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 25 H 0.08 1.56 7.33 -51.93 -0.38 1.18 15 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 28 H 0.36 7.01 6.57 -39.29 -0.26 6.75 15 LS Contribution 233.55 15.07 3.52 3.52 Total: -1.00 -27.58 233.55 -4.63 -32.22 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -2.92 Total: 2.57 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -0.81 Total: -5.00 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.09 Total: -38.24 kcal Atomic # 9 Polarization: -11.52 SS G_CDS: 0.11 Total: -11.41 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.63 Total: 16.35 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -27.58 -4.63 -32.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709954337.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.158 kcal (2) G-P(sol) polarization free energy of solvation -27.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds