Wall clock time and date at job start Mon Mar 30 2020 02:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47124 * 271.78786 * 3 2 1 5 5 H 1.48488 * 109.47205 * 31.79468 * 3 2 1 6 6 H 1.48508 * 109.46736 * 151.79579 * 3 2 1 7 7 C 1.37876 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00000 * 5.48308 * 7 2 1 9 9 C 1.50696 * 119.99794 * 185.48422 * 7 2 1 10 10 H 1.09001 * 109.53930 * 335.40438 * 9 7 2 11 11 C 1.53124 * 109.50509 * 95.50590 * 9 7 2 12 12 C 1.53122 * 109.15717 * 62.28358 * 11 9 7 13 13 C 1.53040 * 109.28105 * 57.65958 * 12 11 9 14 14 N 1.46850 * 109.52129 * 300.81729 * 13 12 11 15 15 C 1.46852 * 111.19719 * 61.73910 * 14 13 12 16 16 H 1.09007 * 109.45282 * 58.27201 * 15 14 13 17 17 C 1.53001 * 109.46018 * 178.24151 * 15 14 13 18 18 F 1.39904 * 109.46781 * 180.02562 * 17 15 14 19 19 F 1.39895 * 109.47173 * 60.05923 * 17 15 14 20 20 F 1.39896 * 109.47052 * 300.05158 * 17 15 14 21 21 H 0.97003 * 120.00049 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.52394 * 182.19058 * 11 9 7 23 23 H 1.09000 * 109.52124 * 302.38443 * 11 9 7 24 24 H 1.09004 * 109.49975 * 177.59620 * 12 11 9 25 25 H 1.09001 * 109.50550 * 297.67325 * 12 11 9 26 26 H 1.08996 * 109.46052 * 60.83059 * 13 12 11 27 27 H 1.08994 * 109.46067 * 180.81495 * 13 12 11 28 28 H 1.00904 * 110.99851 * 297.64630 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4587 2.0683 -1.3994 5 1 1.4661 2.6414 0.7376 6 1 3.5652 1.4295 0.6617 7 6 2.0045 -1.1940 -0.0005 8 1 1.4682 -2.1272 -0.0903 9 6 3.5063 -1.1970 0.1242 10 1 3.9031 -0.2442 -0.2262 11 6 3.8972 -1.4057 1.5899 12 6 3.3878 -2.7723 2.0562 13 6 3.9717 -3.8634 1.1558 14 7 3.5689 -3.6194 -0.2351 15 6 4.0868 -2.3337 -0.7202 16 1 5.1739 -2.3269 -0.6404 17 6 3.6819 -2.1403 -2.1829 18 9 4.1757 -0.9157 -2.6454 19 9 2.2868 -2.1485 -2.2856 20 9 4.2126 -3.1792 -2.9550 21 1 -0.4850 0.8401 0.0004 22 1 4.9822 -1.3691 1.6863 23 1 3.4495 -0.6222 2.2013 24 1 3.6999 -2.9449 3.0862 25 1 2.2996 -2.7947 1.9971 26 1 5.0593 -3.8492 1.2268 27 1 3.5995 -4.8364 1.4762 28 1 2.5659 -3.6659 -0.3345 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709954337.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:11 Heat of formation + Delta-G solvation = -181.941681 kcal Electronic energy + Delta-G solvation = -16867.766787 eV Core-core repulsion = 13695.241120 eV Total energy + Delta-G solvation = -3172.525668 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.80038 -48.36162 -48.20279 -39.89464 -34.74262 -32.77754 -32.44478 -27.89573 -26.11914 -23.93125 -22.83369 -21.11260 -19.11570 -19.00462 -18.70889 -18.42153 -16.56021 -15.77592 -15.62430 -15.25988 -15.14692 -14.95412 -14.74575 -14.63955 -14.42142 -14.40082 -14.29142 -13.83984 -13.06073 -12.93456 -12.87184 -12.16606 -12.08311 -11.87412 -11.71913 -11.29827 -10.84998 -10.60951 -9.30652 -8.23864 -6.22851 1.31119 1.36197 1.41198 2.04736 2.35185 2.93714 3.14855 3.20418 3.44653 3.81283 4.10177 4.29230 4.37230 4.40180 4.52163 4.74840 4.91084 4.99123 5.13683 5.26498 5.42644 5.50810 5.74953 5.98200 6.24088 6.35538 6.79726 7.38853 8.91842 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.024772 B = 0.016967 C = 0.012792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.034915 B = 1649.854180 C = 2188.320806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.021 3.979 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.238 1.238 7 C -0.488 4.488 8 H 0.053 0.947 9 C -0.031 4.031 10 H 0.040 0.960 11 C -0.103 4.103 12 C -0.143 4.143 13 C 0.068 3.932 14 N -0.675 5.675 15 C 0.064 3.936 16 H 0.125 0.875 17 C 0.456 3.544 18 F -0.196 7.196 19 F -0.178 7.178 20 F -0.188 7.188 21 H 0.261 0.739 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.574 -4.705 1.292 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.176 4.176 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.161 1.161 7 C -0.526 4.526 8 H 0.071 0.929 9 C -0.051 4.051 10 H 0.058 0.942 11 C -0.141 4.141 12 C -0.182 4.182 13 C -0.061 4.061 14 N -0.305 5.305 15 C -0.048 4.048 16 H 0.143 0.857 17 C 0.402 3.598 18 F -0.178 7.178 19 F -0.160 7.160 20 F -0.170 7.170 21 H 0.070 0.930 22 H 0.085 0.915 23 H 0.060 0.940 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.938 -4.978 0.991 12.058 hybrid contribution -1.050 1.811 -0.018 2.094 sum 9.888 -3.167 0.974 10.429 Atomic orbital electron populations 1.70022 1.07881 1.27373 1.53017 1.25641 0.95137 1.01914 0.94930 0.86214 0.80436 0.80806 0.78539 1.20627 1.21806 1.16132 1.20964 0.90202 0.93426 1.48010 0.92891 1.19955 0.95735 0.94825 0.94582 0.94230 1.21606 0.99206 0.97512 0.95810 1.22062 1.00573 0.95443 1.00167 1.22056 1.01185 0.98134 0.84692 1.60856 1.18817 1.28205 1.22633 1.22619 1.01785 0.93007 0.87369 0.85747 1.20732 0.75084 0.72720 0.91308 1.93088 1.87835 1.46107 1.90782 1.93239 1.30066 1.95947 1.96718 1.93120 1.86325 1.58940 1.78567 0.93014 0.91538 0.94017 0.90354 0.93717 0.89300 0.89036 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.10 13.96 21.45 0.30 -56.80 15 2 C 0.02 1.17 5.47 84.65 0.46 1.64 15 3 Si 0.91 43.14 27.23 68.60 1.87 45.01 15 4 H -0.28 -13.38 7.11 99.48 0.71 -12.68 15 5 H -0.29 -13.80 7.11 99.48 0.71 -13.10 15 6 H -0.24 -10.14 6.47 99.48 0.64 -9.49 15 7 C -0.49 -24.90 5.11 25.60 0.13 -24.77 15 8 H 0.05 2.97 6.16 -2.91 -0.02 2.95 15 9 C -0.03 -1.26 1.67 -11.49 -0.02 -1.28 15 10 H 0.04 1.71 4.77 -2.39 -0.01 1.69 15 11 C -0.10 -3.66 5.50 30.68 0.17 -3.49 15 12 C -0.14 -4.51 5.82 30.65 0.18 -4.34 15 13 C 0.07 1.86 6.55 86.33 0.57 2.42 15 14 N -0.67 -22.74 6.38 -491.66 -3.14 -25.88 15 15 C 0.06 2.32 2.30 44.94 0.10 2.42 15 16 H 0.12 3.76 8.14 -2.38 -0.02 3.74 15 17 C 0.46 18.14 2.79 71.98 0.20 18.34 15 18 F -0.20 -7.94 16.81 44.97 0.76 -7.18 15 19 F -0.18 -8.36 14.04 44.97 0.63 -7.73 15 20 F -0.19 -6.91 17.24 44.97 0.78 -6.13 15 21 H 0.26 15.11 8.31 -92.71 -0.77 14.34 15 22 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.04 1.61 8.14 -2.39 -0.02 1.59 15 24 H 0.08 2.03 8.14 -2.38 -0.02 2.01 15 25 H 0.04 1.71 7.33 -2.39 -0.02 1.69 15 26 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 15 28 H 0.34 13.25 6.57 -89.69 -0.59 12.66 15 Total: -1.00 -59.77 233.55 3.52 -56.25 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.53 Total: 11.53 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 1.79 Total: -9.07 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -2.84 Total: -82.68 kcal Atomic # 9 Polarization: -23.21 SS G_CDS: 2.16 Total: -21.05 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.87 Total: 45.01 kcal Total: -59.77 3.52 -56.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709954337.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.690 kcal (2) G-P(sol) polarization free energy of solvation -59.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds