Wall clock time and date at job start Mon Mar 30 2020 02:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.87938 * 2 1 4 4 C 1.51189 * 109.80232 * 239.30005 * 2 1 3 5 5 S 1.75754 * 125.35639 * 50.15775 * 4 2 1 6 6 C 1.75740 * 91.04355 * 179.79946 * 5 4 2 7 7 C 1.32898 * 109.57716 * 0.07481 * 6 5 4 8 8 C 1.34641 * 124.54247 * 230.13406 * 4 2 1 9 9 C 1.52246 * 123.14478 * 0.30836 * 8 4 2 10 10 C 1.53010 * 109.17484 * 340.83841 * 9 8 4 11 11 N 1.47068 * 108.94125 * 46.99069 * 10 9 8 12 12 C 1.36942 * 121.08589 * 115.12429 * 11 10 9 13 13 H 1.08001 * 119.99541 * 215.87086 * 12 11 10 14 14 C 1.38814 * 120.00058 * 35.87832 * 12 11 10 15 15 N 1.31618 * 119.99717 * 198.57049 * 14 12 11 16 16 Si 1.86797 * 120.00110 * 18.56500 * 14 12 11 17 17 H 1.48499 * 109.47158 * 270.00448 * 16 14 12 18 18 H 1.48502 * 109.47110 * 149.99953 * 16 14 12 19 19 H 1.48503 * 109.47144 * 30.00368 * 16 14 12 20 20 H 1.09000 * 109.47118 * 299.07650 * 1 2 3 21 21 H 1.09004 * 109.47353 * 59.07543 * 1 2 3 22 22 H 1.08998 * 109.47304 * 179.07316 * 1 2 3 23 23 H 1.08006 * 125.21119 * 180.02562 * 6 5 4 24 24 H 1.08011 * 122.11812 * 180.02562 * 7 6 5 25 25 H 1.08990 * 109.51930 * 220.92943 * 9 8 4 26 26 H 1.08997 * 109.56537 * 100.77421 * 9 8 4 27 27 H 1.08998 * 109.55838 * 287.15104 * 10 9 8 28 28 H 1.09001 * 109.64640 * 166.88490 * 10 9 8 29 29 H 0.97004 * 119.99952 * 355.91578 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0422 -0.7262 -1.2231 5 16 1.5227 -0.4273 -2.8753 6 6 2.6160 -1.6646 -3.4770 7 6 3.2763 -2.2083 -2.4599 8 6 2.9697 -1.7019 -1.1991 9 6 3.6183 -2.2024 0.0842 10 6 3.4318 -1.1544 1.1834 11 7 2.0294 -0.7115 1.1877 12 6 1.2134 -0.9581 2.2594 13 1 0.1688 -1.1830 2.1022 14 6 1.7288 -0.9189 3.5478 15 7 1.0773 -1.4962 4.5350 16 14 3.3469 -0.0469 3.8803 17 1 4.4680 -1.0087 3.7277 18 1 3.3429 0.4934 5.2635 19 1 3.5161 1.0679 2.9139 20 1 -0.3633 0.4994 0.8981 21 1 -0.3634 0.5281 -0.8816 22 1 -0.3634 -1.0275 -0.0166 23 1 2.7329 -1.9413 -4.5145 24 1 4.0043 -2.9935 -2.6018 25 1 4.6823 -2.3667 -0.0857 26 1 3.1494 -3.1378 0.3894 27 1 4.0831 -0.3022 0.9893 28 1 3.6799 -1.5903 2.1511 29 1 0.2089 -1.8975 4.3739 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712260983.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:38 Heat of formation + Delta-G solvation = 50.993064 kcal Electronic energy + Delta-G solvation = -13488.903142 eV Core-core repulsion = 11311.087894 eV Total energy + Delta-G solvation = -2177.815248 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.66106 -35.68375 -32.29754 -31.79053 -29.46159 -26.65352 -24.85031 -22.91670 -21.55116 -20.30860 -17.97548 -16.86991 -16.65985 -15.04616 -14.58352 -14.29109 -14.05464 -13.24232 -13.01375 -12.70329 -12.33472 -12.01038 -11.56282 -11.53915 -11.12284 -11.02591 -10.77505 -10.55828 -10.30835 -9.92557 -9.63436 -9.07858 -8.52302 -8.18041 -7.86257 -7.05675 -6.24031 -3.42209 1.42257 2.01230 2.38494 3.10789 3.39086 3.53512 3.69855 4.56895 4.90819 5.20640 5.29098 5.46011 5.69024 5.75977 5.89003 6.00613 6.06213 6.12162 6.22455 6.30440 6.43297 6.62456 6.65803 6.70651 6.93244 6.97656 7.08916 8.06775 8.43188 9.03538 9.55453 10.21125 11.11058 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.042620 B = 0.010217 C = 0.009127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.809205 B = 2739.965351 C = 3067.020894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.232 3.768 3 H 0.046 0.954 4 C -0.164 4.164 5 S 0.069 5.931 6 C -0.233 4.233 7 C -0.122 4.122 8 C -0.105 4.105 9 C -0.073 4.073 10 C 0.126 3.874 11 N -0.595 5.595 12 C -0.343 4.343 13 H 0.068 0.932 14 C -0.008 4.008 15 N -0.918 5.918 16 Si 1.063 2.937 17 H -0.292 1.292 18 H -0.298 1.298 19 H -0.284 1.284 20 H 0.071 0.929 21 H 0.042 0.958 22 H 0.055 0.945 23 H 0.157 0.843 24 H 0.131 0.869 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.032 0.968 28 H 0.077 0.923 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 1.156 -13.104 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.124 3.876 3 H 0.064 0.936 4 C -0.282 4.282 5 S 0.332 5.668 6 C -0.368 4.368 7 C -0.153 4.153 8 C -0.116 4.116 9 C -0.115 4.115 10 C 0.000 4.000 11 N -0.320 5.320 12 C -0.471 4.471 13 H 0.086 0.914 14 C -0.211 4.211 15 N -0.557 5.557 16 Si 0.894 3.106 17 H -0.220 1.220 18 H -0.226 1.226 19 H -0.210 1.210 20 H 0.090 0.910 21 H 0.061 0.939 22 H 0.075 0.925 23 H 0.174 0.826 24 H 0.149 0.851 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.773 2.494 -12.604 13.391 hybrid contribution -0.067 -1.489 -0.825 1.704 sum 3.707 1.005 -13.429 13.968 Atomic orbital electron populations 1.21813 0.94479 1.01933 1.00830 1.19170 0.93362 0.92472 0.82604 0.93650 1.25741 1.02314 1.02857 0.97336 1.83885 1.43253 1.39106 1.00538 1.25181 1.04653 1.04433 1.02534 1.20105 1.01754 1.01741 0.91724 1.19590 0.99183 0.97624 0.95232 1.21050 0.98124 1.00343 0.91952 1.21373 0.86630 0.94581 0.97416 1.44437 1.08175 1.64122 1.15240 1.20147 0.94769 1.47584 0.84647 0.91433 1.26305 1.05477 0.98010 0.91275 1.70913 1.15224 1.35269 1.34271 0.83765 0.75040 0.76823 0.74981 1.22007 1.22603 1.20976 0.91025 0.93890 0.92547 0.82568 0.85141 0.91852 0.90802 0.95026 0.90476 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 7.83 37.16 0.29 -2.31 15 2 C 0.23 4.90 3.80 -68.47 -0.26 4.64 15 3 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 4 C -0.16 -3.13 5.85 -35.34 -0.21 -3.33 15 5 S 0.07 1.06 22.80 -107.50 -2.45 -1.39 15 6 C -0.23 -3.33 11.20 28.89 0.32 -3.01 15 7 C -0.12 -1.90 9.99 -41.04 -0.41 -2.31 15 8 C -0.11 -1.95 5.80 -104.74 -0.61 -2.56 15 9 C -0.07 -1.38 6.32 -27.11 -0.17 -1.55 15 10 C 0.13 2.76 4.29 -3.73 -0.02 2.74 15 11 N -0.59 -14.39 2.60 -165.72 -0.43 -14.82 15 12 C -0.34 -9.43 8.88 -15.06 -0.13 -9.57 15 13 H 0.07 1.97 6.71 -52.49 -0.35 1.62 15 14 C -0.01 -0.24 5.26 -17.43 -0.09 -0.33 15 15 N -0.92 -28.04 13.70 55.49 0.76 -27.28 15 16 Si 1.06 26.05 25.16 -169.99 -4.28 21.77 15 17 H -0.29 -6.71 6.55 56.52 0.37 -6.34 15 18 H -0.30 -7.43 7.11 56.52 0.40 -7.03 15 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 20 H 0.07 1.48 7.40 -51.93 -0.38 1.10 15 21 H 0.04 0.71 7.86 -51.93 -0.41 0.30 15 22 H 0.06 1.17 7.90 -51.93 -0.41 0.76 15 23 H 0.16 1.75 8.06 -52.48 -0.42 1.33 15 24 H 0.13 1.72 8.06 -52.48 -0.42 1.29 15 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 15 26 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 27 H 0.03 0.66 7.93 -51.93 -0.41 0.25 15 28 H 0.08 1.79 4.47 -51.93 -0.23 1.56 15 29 H 0.26 8.00 8.73 -40.82 -0.36 7.65 15 LS Contribution 245.79 15.07 3.70 3.70 Total: -1.00 -29.78 245.79 -7.47 -37.25 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -3.50 Total: -1.65 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.28 Total: -17.59 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.33 Total: -42.10 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -4.28 Total: 21.77 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.45 Total: -1.39 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.78 -7.47 -37.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712260983.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.247 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds