Wall clock time and date at job start Mon Mar 30 2020 02:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.87938 * 2 1 4 4 C 1.51189 * 109.80232 * 239.30005 * 2 1 3 5 5 S 1.75754 * 125.35639 * 50.15775 * 4 2 1 6 6 C 1.75740 * 91.04355 * 179.79946 * 5 4 2 7 7 C 1.32898 * 109.57716 * 0.07481 * 6 5 4 8 8 C 1.34641 * 124.54247 * 230.13406 * 4 2 1 9 9 C 1.52246 * 123.14478 * 0.30836 * 8 4 2 10 10 C 1.53010 * 109.17484 * 340.83841 * 9 8 4 11 11 N 1.47068 * 108.94125 * 46.99069 * 10 9 8 12 12 C 1.36942 * 121.08589 * 115.12429 * 11 10 9 13 13 H 1.08001 * 119.99541 * 215.87086 * 12 11 10 14 14 C 1.38814 * 120.00058 * 35.87832 * 12 11 10 15 15 N 1.31618 * 119.99717 * 198.57049 * 14 12 11 16 16 Si 1.86797 * 120.00110 * 18.56500 * 14 12 11 17 17 H 1.48499 * 109.47158 * 270.00448 * 16 14 12 18 18 H 1.48502 * 109.47110 * 149.99953 * 16 14 12 19 19 H 1.48503 * 109.47144 * 30.00368 * 16 14 12 20 20 H 1.09000 * 109.47118 * 299.07650 * 1 2 3 21 21 H 1.09004 * 109.47353 * 59.07543 * 1 2 3 22 22 H 1.08998 * 109.47304 * 179.07316 * 1 2 3 23 23 H 1.08006 * 125.21119 * 180.02562 * 6 5 4 24 24 H 1.08011 * 122.11812 * 180.02562 * 7 6 5 25 25 H 1.08990 * 109.51930 * 220.92943 * 9 8 4 26 26 H 1.08997 * 109.56537 * 100.77421 * 9 8 4 27 27 H 1.08998 * 109.55838 * 287.15104 * 10 9 8 28 28 H 1.09001 * 109.64640 * 166.88490 * 10 9 8 29 29 H 0.97004 * 119.99952 * 355.91578 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0422 -0.7262 -1.2231 5 16 1.5227 -0.4273 -2.8753 6 6 2.6160 -1.6646 -3.4770 7 6 3.2763 -2.2083 -2.4599 8 6 2.9697 -1.7019 -1.1991 9 6 3.6183 -2.2024 0.0842 10 6 3.4318 -1.1544 1.1834 11 7 2.0294 -0.7115 1.1877 12 6 1.2134 -0.9581 2.2594 13 1 0.1688 -1.1830 2.1022 14 6 1.7288 -0.9189 3.5478 15 7 1.0773 -1.4962 4.5350 16 14 3.3469 -0.0469 3.8803 17 1 4.4680 -1.0087 3.7277 18 1 3.3429 0.4934 5.2635 19 1 3.5161 1.0679 2.9139 20 1 -0.3633 0.4994 0.8981 21 1 -0.3634 0.5281 -0.8816 22 1 -0.3634 -1.0275 -0.0166 23 1 2.7329 -1.9413 -4.5145 24 1 4.0043 -2.9935 -2.6018 25 1 4.6823 -2.3667 -0.0857 26 1 3.1494 -3.1378 0.3894 27 1 4.0831 -0.3022 0.9893 28 1 3.6799 -1.5903 2.1511 29 1 0.2089 -1.8975 4.3739 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712260983.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:38 Heat of formation + Delta-G solvation = 32.790601 kcal Electronic energy + Delta-G solvation = -13489.692460 eV Core-core repulsion = 11311.087894 eV Total energy + Delta-G solvation = -2178.604566 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.15289 -37.25789 -34.28137 -33.43858 -31.11793 -28.17610 -26.59933 -24.61803 -23.04724 -21.96038 -19.71188 -18.52302 -18.14777 -16.67699 -16.32229 -15.79751 -15.57931 -15.11658 -14.55323 -14.30859 -13.83997 -13.70892 -13.15281 -13.00242 -12.76860 -12.58700 -12.34697 -12.16753 -11.82547 -11.67556 -11.38712 -11.17166 -10.59623 -9.45205 -9.15475 -9.08825 -8.43287 -5.61088 0.15961 0.76284 1.15069 1.42644 1.56583 1.75892 1.83415 2.53989 3.08536 3.29874 3.90195 3.99498 4.20887 4.28695 4.39576 4.49760 4.58818 4.67998 4.69430 4.86797 4.90185 5.03028 5.15822 5.24436 5.29832 5.58477 5.72167 5.87058 6.28396 6.91023 7.50913 8.11554 8.86347 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.042620 B = 0.010217 C = 0.009127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.809205 B = 2739.965351 C = 3067.020894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.227 3.773 3 H 0.045 0.955 4 C -0.206 4.206 5 S 0.100 5.900 6 C -0.212 4.212 7 C -0.137 4.137 8 C -0.112 4.112 9 C -0.069 4.069 10 C 0.118 3.882 11 N -0.612 5.612 12 C -0.324 4.324 13 H 0.037 0.963 14 C -0.061 4.061 15 N -0.954 5.954 16 Si 1.102 2.898 17 H -0.267 1.267 18 H -0.306 1.306 19 H -0.270 1.270 20 H 0.050 0.950 21 H 0.074 0.926 22 H 0.036 0.964 23 H 0.195 0.805 24 H 0.158 0.842 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.528 1.290 -16.060 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.119 3.881 3 H 0.063 0.937 4 C -0.324 4.324 5 S 0.364 5.636 6 C -0.347 4.347 7 C -0.167 4.167 8 C -0.125 4.125 9 C -0.110 4.110 10 C -0.007 4.007 11 N -0.338 5.338 12 C -0.454 4.454 13 H 0.054 0.946 14 C -0.257 4.257 15 N -0.596 5.596 16 Si 0.928 3.072 17 H -0.193 1.193 18 H -0.234 1.234 19 H -0.195 1.195 20 H 0.069 0.931 21 H 0.093 0.907 22 H 0.056 0.944 23 H 0.212 0.788 24 H 0.175 0.825 25 H 0.116 0.884 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.554 2.627 -15.611 16.777 hybrid contribution -0.696 -1.537 -0.073 1.689 sum 4.858 1.090 -15.684 16.455 Atomic orbital electron populations 1.21702 0.94181 1.00824 1.01302 1.19207 0.93731 0.92490 0.82639 0.93738 1.25494 1.03970 1.04332 0.98609 1.83735 1.43109 1.39279 0.97488 1.25696 1.02451 1.02427 1.04104 1.20242 1.03079 1.02884 0.90475 1.19807 0.98895 0.97543 0.96213 1.20944 1.00332 0.98391 0.91375 1.21461 0.85380 0.95911 0.97934 1.44545 1.08774 1.65062 1.15402 1.19994 0.93988 1.45389 0.86027 0.94569 1.27436 1.08389 0.98507 0.91341 1.71027 1.15270 1.38008 1.35304 0.83244 0.72724 0.76665 0.74572 1.19288 1.23444 1.19515 0.93107 0.90688 0.94434 0.78777 0.82464 0.88371 0.92236 0.93700 0.92118 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 7.83 71.98 0.56 -4.28 15 2 C 0.23 9.47 3.80 44.27 0.17 9.63 15 3 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 4 C -0.21 -7.45 5.85 25.02 0.15 -7.30 15 5 S 0.10 2.76 22.80 -56.49 -1.29 1.47 15 6 C -0.21 -5.01 11.20 66.64 0.75 -4.26 15 7 C -0.14 -3.67 9.99 21.35 0.21 -3.46 15 8 C -0.11 -3.87 5.80 -19.94 -0.12 -3.99 15 9 C -0.07 -2.48 6.32 30.35 0.19 -2.28 15 10 C 0.12 5.03 4.29 86.27 0.37 5.40 15 11 N -0.61 -29.69 2.60 -678.23 -1.76 -31.45 15 12 C -0.32 -18.41 8.88 84.03 0.75 -17.66 15 13 H 0.04 2.25 6.71 -2.91 -0.02 2.23 15 14 C -0.06 -3.59 5.26 84.86 0.45 -3.14 15 15 N -0.95 -60.52 13.70 21.65 0.30 -60.22 15 16 Si 1.10 52.92 25.16 68.60 1.73 54.65 15 17 H -0.27 -11.61 6.55 99.48 0.65 -10.96 15 18 H -0.31 -14.99 7.11 99.48 0.71 -14.29 15 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 20 H 0.05 2.17 7.40 -2.39 -0.02 2.15 15 21 H 0.07 2.42 7.86 -2.38 -0.02 2.40 15 22 H 0.04 1.59 7.90 -2.39 -0.02 1.57 15 23 H 0.20 3.10 8.06 -2.91 -0.02 3.08 15 24 H 0.16 3.34 8.06 -2.90 -0.02 3.32 15 25 H 0.10 2.79 8.14 -2.39 -0.02 2.77 15 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 15 27 H 0.04 1.79 7.93 -2.39 -0.02 1.77 15 28 H 0.06 2.76 4.47 -2.39 -0.01 2.75 15 29 H 0.25 15.91 8.73 -92.71 -0.81 15.10 15 Total: -1.00 -65.90 245.79 3.50 -62.40 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.05 Total: 4.50 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 3.48 Total: -31.35 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -1.47 Total: -91.67 kcal Atomic # 14 Polarization: 52.92 SS G_CDS: 1.73 Total: 54.65 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.29 Total: 1.47 kcal Total: -65.90 3.50 -62.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712260983.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.193 kcal (2) G-P(sol) polarization free energy of solvation -65.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds