Wall clock time and date at job start Mon Mar 30 2020 02:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.87655 * 2 1 4 4 C 1.51192 * 109.66766 * 120.77723 * 2 1 3 5 5 S 1.75755 * 125.35962 * 289.33531 * 4 2 1 6 6 C 1.75739 * 91.04743 * 179.79920 * 5 4 2 7 7 C 1.32901 * 109.57669 * 0.06945 * 6 5 4 8 8 C 1.34639 * 124.54505 * 109.30630 * 4 2 1 9 9 C 1.52250 * 123.13961 * 0.31367 * 8 4 2 10 10 C 1.53007 * 109.17822 * 340.83388 * 9 8 4 11 11 N 1.47071 * 108.93897 * 46.99313 * 10 9 8 12 12 C 1.36940 * 121.08777 * 115.12824 * 11 10 9 13 13 H 1.08000 * 119.99911 * 163.48164 * 12 11 10 14 14 C 1.38814 * 119.99854 * 343.47470 * 12 11 10 15 15 N 1.31613 * 120.00147 * 324.14300 * 14 12 11 16 16 Si 1.86799 * 119.99754 * 144.13815 * 14 12 11 17 17 H 1.48498 * 109.47228 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.47309 * 300.00223 * 16 14 12 19 19 H 1.48505 * 109.47076 * 60.00299 * 16 14 12 20 20 H 1.09001 * 109.47118 * 180.92697 * 1 2 3 21 21 H 1.09007 * 109.47607 * 300.93061 * 1 2 3 22 22 H 1.08997 * 109.47424 * 60.92723 * 1 2 3 23 23 H 1.07993 * 125.21129 * 180.02562 * 6 5 4 24 24 H 1.07996 * 122.11774 * 180.02562 * 7 6 5 25 25 H 1.08996 * 109.51628 * 220.92188 * 9 8 4 26 26 H 1.08997 * 109.56999 * 100.77729 * 9 8 4 27 27 H 1.08998 * 109.56015 * 287.15802 * 10 9 8 28 28 H 1.08996 * 109.65060 * 166.88536 * 10 9 8 29 29 H 0.97001 * 120.00113 * 354.06415 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0388 -0.7285 1.2232 5 16 1.9342 -0.1383 2.8754 6 6 2.7262 -1.5871 3.4772 7 6 3.0130 -2.3930 2.4601 8 6 2.6410 -1.9325 1.1993 9 6 2.8912 -2.7127 -0.0840 10 6 1.9691 -2.1811 -1.1832 11 7 2.0294 -0.7117 -1.1876 12 6 2.5386 -0.0281 -2.2594 13 1 2.3390 1.0274 -2.3710 14 6 3.3117 -0.6918 -3.2022 15 7 4.1283 -1.6526 -2.8251 16 14 3.1927 -0.2213 -5.0060 17 1 4.1125 -1.0735 -5.8016 18 1 1.7994 -0.4217 -5.4791 19 1 3.5714 1.2051 -5.1715 20 1 -0.3633 -1.0275 0.0166 21 1 -0.3634 0.5282 0.8815 22 1 -0.3634 0.4993 -0.8981 23 1 2.9466 -1.7910 4.5146 24 1 3.5038 -3.3444 2.6021 25 1 2.6840 -3.7692 0.0860 26 1 3.9303 -2.5899 -0.3892 27 1 0.9462 -2.5038 -0.9891 28 1 2.2946 -2.5626 -2.1509 29 1 4.2547 -1.8393 -1.8817 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712260984.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:40 Heat of formation + Delta-G solvation = 37.385307 kcal Electronic energy + Delta-G solvation = -13526.707015 eV Core-core repulsion = 11348.301691 eV Total energy + Delta-G solvation = -2178.405325 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.20586 -37.25775 -34.47579 -32.70259 -30.78035 -28.57963 -26.25828 -24.45620 -23.56262 -21.69306 -20.16053 -18.05935 -18.05216 -16.41512 -16.12023 -15.93990 -15.47349 -14.97700 -14.41299 -14.05153 -13.81844 -13.56507 -13.35934 -12.80429 -12.66805 -12.51085 -12.37738 -12.05073 -11.93710 -11.85335 -11.55973 -11.33290 -10.37412 -9.44882 -9.17899 -9.00512 -8.32046 -5.25171 0.13955 0.74922 1.11634 1.60606 1.67065 1.80398 1.87080 2.66216 3.12105 3.46091 3.89277 4.01250 4.20775 4.37479 4.46375 4.53497 4.61714 4.64720 4.71328 4.90144 4.99929 5.11862 5.18166 5.26289 5.33078 5.59756 5.70891 5.81885 6.40823 7.01242 7.76704 8.21913 8.98106 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.044487 B = 0.009513 C = 0.008555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.252441 B = 2942.784444 C = 3272.136040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.226 3.774 3 H 0.056 0.944 4 C -0.201 4.201 5 S 0.097 5.903 6 C -0.210 4.210 7 C -0.140 4.140 8 C -0.117 4.117 9 C -0.070 4.070 10 C 0.143 3.857 11 N -0.602 5.602 12 C -0.367 4.367 13 H 0.055 0.945 14 C -0.066 4.066 15 N -0.930 5.930 16 Si 1.104 2.896 17 H -0.292 1.292 18 H -0.283 1.283 19 H -0.279 1.279 20 H 0.047 0.953 21 H 0.071 0.929 22 H 0.054 0.946 23 H 0.196 0.804 24 H 0.153 0.847 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.032 0.968 28 H 0.061 0.939 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 -0.261 10.693 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.118 3.882 3 H 0.074 0.926 4 C -0.320 4.320 5 S 0.361 5.639 6 C -0.345 4.345 7 C -0.170 4.170 8 C -0.129 4.129 9 C -0.112 4.112 10 C 0.018 3.982 11 N -0.325 5.325 12 C -0.495 4.495 13 H 0.073 0.927 14 C -0.264 4.264 15 N -0.572 5.572 16 Si 0.930 3.070 17 H -0.218 1.218 18 H -0.209 1.209 19 H -0.205 1.205 20 H 0.066 0.934 21 H 0.090 0.910 22 H 0.073 0.927 23 H 0.213 0.787 24 H 0.170 0.830 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.083 0.703 9.867 11.121 hybrid contribution 0.404 -0.852 0.814 1.246 sum -4.679 -0.150 10.681 11.662 Atomic orbital electron populations 1.22049 0.94718 1.01451 1.01569 1.19300 0.93773 0.93368 0.81798 0.92588 1.25712 1.07369 1.00278 0.98606 1.83672 1.60191 1.22202 0.97857 1.25652 1.07388 0.97516 1.03969 1.20239 1.03571 1.02528 0.90708 1.19813 1.01421 0.95649 0.96014 1.21001 1.00043 0.98192 0.91951 1.20926 0.95855 0.83653 0.97798 1.44568 1.71852 1.01510 1.14550 1.20130 1.31034 0.95891 1.02486 0.92737 1.26864 0.92856 0.98599 1.08075 1.70907 1.30489 1.36489 1.19319 0.83006 0.76227 0.75691 0.72126 1.21806 1.20908 1.20518 0.93389 0.90997 0.92706 0.78673 0.82988 0.89850 0.92909 0.95032 0.92072 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 9.40 71.98 0.68 -4.34 15 2 C 0.23 9.79 3.36 44.27 0.15 9.94 15 3 H 0.06 2.54 8.00 -2.38 -0.02 2.52 15 4 C -0.20 -7.90 5.70 25.02 0.14 -7.75 15 5 S 0.10 2.91 23.32 -56.49 -1.32 1.59 15 6 C -0.21 -5.64 11.20 66.64 0.75 -4.89 15 7 C -0.14 -4.39 9.99 21.35 0.21 -4.18 15 8 C -0.12 -4.59 5.80 -19.94 -0.12 -4.70 15 9 C -0.07 -3.01 6.09 30.35 0.18 -2.82 15 10 C 0.14 6.89 5.32 86.27 0.46 7.35 15 11 N -0.60 -30.68 2.59 -678.24 -1.76 -32.44 15 12 C -0.37 -20.71 9.53 84.03 0.80 -19.91 15 13 H 0.05 3.10 8.03 -2.91 -0.02 3.08 15 14 C -0.07 -3.73 4.53 84.86 0.38 -3.34 15 15 N -0.93 -55.63 12.15 21.65 0.26 -55.37 15 16 Si 1.10 50.83 30.04 68.60 2.06 52.89 15 17 H -0.29 -13.62 7.11 99.48 0.71 -12.91 15 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 20 H 0.05 1.74 7.47 -2.39 -0.02 1.72 15 21 H 0.07 2.18 8.14 -2.38 -0.02 2.16 15 22 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.20 3.65 8.06 -2.91 -0.02 3.62 15 24 H 0.15 4.01 8.06 -2.91 -0.02 3.98 15 25 H 0.08 3.05 8.14 -2.39 -0.02 3.03 15 26 H 0.05 2.54 6.06 -2.39 -0.01 2.53 15 27 H 0.03 1.42 7.45 -2.39 -0.02 1.40 15 28 H 0.06 3.29 5.78 -2.39 -0.01 3.28 15 29 H 0.26 15.86 5.12 -92.71 -0.47 15.39 15 Total: -1.00 -63.58 248.79 4.32 -59.26 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 1.43 Total: 8.73 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 3.64 Total: -34.66 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -1.50 Total: -87.81 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.06 Total: 52.89 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.32 Total: 1.59 kcal Total: -63.58 4.32 -59.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712260984.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.641 kcal (2) G-P(sol) polarization free energy of solvation -63.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds