Wall clock time and date at job start Mon Mar 30 2020 03:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 119.71242 * 2 1 4 4 C 1.53001 * 60.52869 * 113.25235 * 3 2 1 5 5 H 1.09001 * 119.70984 * 247.71600 * 4 3 2 6 6 C 1.51320 * 118.79686 * 89.36748 * 4 3 2 7 7 O 1.21226 * 125.40097 * 117.57502 * 6 4 3 8 8 N 1.33880 * 109.20329 * 297.70786 * 6 4 3 9 9 C 1.46493 * 122.75949 * 179.84169 * 8 6 4 10 10 C 1.52996 * 109.47400 * 269.71016 * 9 8 6 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.33872 * 114.47462 * 359.57762 * 8 6 4 20 20 O 1.21229 * 125.39463 * 180.28922 * 19 8 6 21 21 H 1.09001 * 109.46956 * 232.16358 * 1 2 3 22 22 H 1.08998 * 109.46683 * 352.16319 * 1 2 3 23 23 H 1.09000 * 109.47174 * 112.16425 * 1 2 3 24 24 H 1.08997 * 117.44085 * 220.89743 * 3 2 1 25 25 H 1.08997 * 117.44498 * 5.64939 * 3 2 1 26 26 H 1.09004 * 109.46794 * 149.71114 * 9 8 6 27 27 H 1.09000 * 109.47559 * 29.71591 * 9 8 6 28 28 H 1.09004 * 109.47066 * 60.00265 * 10 9 8 29 29 H 1.08994 * 109.47405 * 300.00096 * 10 9 8 30 30 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.2884 1.3289 0.0000 4 6 2.3720 0.4145 1.2238 5 1 1.9180 0.7274 2.1641 6 6 3.4612 -0.6347 1.2768 7 8 4.3476 -0.6857 2.1022 8 7 3.2924 -1.4960 0.2659 9 6 4.1875 -2.6325 0.0350 10 6 5.3260 -2.2047 -0.8932 11 6 6.2464 -3.3740 -1.1312 12 1 6.0398 -4.3271 -0.6672 13 6 7.3490 -3.2288 -1.9464 14 7 7.6003 -2.0683 -2.5118 15 14 8.4855 -4.6802 -2.2475 16 1 7.7194 -5.7872 -2.8743 17 1 9.5879 -4.2663 -3.1523 18 1 9.0533 -5.1410 -0.9550 19 6 2.2352 -1.2365 -0.5133 20 8 1.8962 -1.8891 -1.4771 21 1 -0.3633 -0.6304 0.8116 22 1 -0.3632 1.0181 0.1401 23 1 -0.3633 -0.3877 -0.9517 24 1 3.1724 1.4027 -0.6333 25 1 1.7014 2.2423 0.0952 26 1 3.6290 -3.4469 -0.4265 27 1 4.6008 -2.9686 0.9859 28 1 5.8845 -1.3903 -0.4317 29 1 4.9128 -1.8687 -1.8442 30 1 8.3762 -1.9660 -3.0850 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713630598.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:51 Heat of formation + Delta-G solvation = -37.082675 kcal Electronic energy + Delta-G solvation = -15168.810740 eV Core-core repulsion = 12544.423371 eV Total energy + Delta-G solvation = -2624.387370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.10283 -38.19369 -36.98895 -35.30613 -33.11793 -30.33191 -29.04891 -25.81715 -24.75307 -23.23968 -21.52127 -20.72073 -18.75950 -16.91880 -16.51731 -15.98320 -15.75006 -14.79551 -14.55809 -14.14058 -13.98389 -13.71481 -13.18489 -12.98720 -12.63951 -12.39483 -12.30611 -11.58752 -11.04687 -10.95475 -10.84634 -10.60411 -10.14639 -10.11798 -9.81191 -9.72787 -9.27330 -8.93327 -8.40667 -6.05630 -4.09631 1.54120 2.76222 3.07507 3.26358 3.33087 3.36696 3.39665 4.05318 4.18962 4.29260 4.43137 4.50497 5.06865 5.30923 5.31128 5.39691 5.51965 5.58528 5.70307 5.89830 5.90257 5.96365 6.27140 6.62451 7.16915 7.54031 7.61321 7.66282 7.89400 8.09690 8.29182 8.94912 9.54480 11.06114 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.044011 B = 0.007003 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.055545 B = 3997.200158 C = 4188.592330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.178 4.178 3 C -0.083 4.083 4 C -0.198 4.198 5 H 0.154 0.846 6 C 0.550 3.450 7 O -0.472 6.472 8 N -0.565 5.565 9 C 0.102 3.898 10 C 0.014 3.986 11 C -0.524 4.524 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.899 3.101 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.555 3.445 20 O -0.470 6.470 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.128 0.872 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.480 6.778 6.016 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.181 4.181 3 C -0.121 4.121 4 C -0.219 4.219 5 H 0.172 0.828 6 C 0.337 3.663 7 O -0.343 6.343 8 N -0.306 5.306 9 C -0.017 4.017 10 C -0.024 4.024 11 C -0.562 4.562 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C 0.342 3.658 20 O -0.341 6.341 21 H 0.084 0.916 22 H 0.089 0.911 23 H 0.096 0.904 24 H 0.127 0.873 25 H 0.147 0.853 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.019 6.406 5.820 15.633 hybrid contribution 0.752 -0.775 -0.170 1.094 sum -12.266 5.630 5.650 14.632 Atomic orbital electron populations 1.21038 0.88069 1.02736 1.03456 1.22698 0.97292 0.95462 1.02664 1.23125 1.01468 0.92116 0.95374 1.23636 0.99304 1.02709 0.96231 0.82813 1.19731 0.84486 0.81983 0.80061 1.90747 1.33185 1.73206 1.37201 1.46864 1.27465 1.28935 1.27362 1.22302 0.91604 0.85415 1.02352 1.19379 0.91329 0.97790 0.93877 1.20961 1.09068 0.96612 1.29584 0.92292 1.25001 0.97693 0.96036 0.95481 1.69961 1.28145 1.23460 1.31524 0.86546 0.80144 0.82469 0.78206 1.20081 1.21179 1.20076 1.19622 0.79507 0.84934 0.81719 1.90734 1.66282 1.52936 1.24125 0.91624 0.91059 0.90400 0.87323 0.85344 0.89879 0.89839 0.95965 0.95973 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.17 37.16 0.38 -0.48 16 2 C -0.18 -2.18 2.99 -154.71 -0.46 -2.64 16 3 C -0.08 -0.85 9.85 -26.73 -0.26 -1.12 16 4 C -0.20 -2.37 7.08 -90.83 -0.64 -3.01 16 5 H 0.15 1.37 8.14 -51.93 -0.42 0.94 16 6 C 0.55 9.66 7.89 -11.08 -0.09 9.57 16 7 O -0.47 -9.80 17.47 5.60 0.10 -9.71 16 8 N -0.57 -10.78 2.55 -115.34 -0.29 -11.08 16 9 C 0.10 2.25 5.49 -4.05 -0.02 2.22 16 10 C 0.01 0.38 5.30 -27.88 -0.15 0.23 16 11 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 15 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.55 9.79 7.61 -11.09 -0.08 9.71 16 20 O -0.47 -9.71 17.47 5.60 0.10 -9.61 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.45 8.04 -51.93 -0.42 0.03 16 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.79 7.83 -51.93 -0.41 1.39 16 27 H 0.08 1.80 7.82 -51.93 -0.41 1.40 16 28 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 269.34 15.07 4.06 4.06 Total: -1.00 -33.96 269.34 -5.80 -39.75 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: -3.73 Total: -4.51 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.74 Total: 0.70 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.44 Total: -37.61 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.20 Total: -19.32 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.96 -5.80 -39.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713630598.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.672 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds