Wall clock time and date at job start Mon Mar 30 2020 03:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34434 * 126.81419 * 2 1 4 4 N 1.36422 * 109.08522 * 180.16337 * 3 2 1 5 5 C 1.46505 * 124.80948 * 179.81790 * 4 3 2 6 6 C 1.52997 * 109.47212 * 269.72069 * 5 4 3 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00362 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99850 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47052 * 89.99717 * 11 9 7 13 13 H 1.48495 * 109.47307 * 209.99656 * 11 9 7 14 14 H 1.48500 * 109.47143 * 330.00164 * 11 9 7 15 15 C 1.34626 * 110.38467 * 359.55294 * 4 3 2 16 16 C 1.37843 * 108.20328 * 0.26423 * 15 4 3 17 17 C 1.47107 * 127.02469 * 179.97438 * 16 15 4 18 18 O 1.21551 * 120.00456 * 180.02562 * 17 16 15 19 19 O 1.34792 * 119.99909 * 0.03106 * 17 16 15 20 20 H 1.09006 * 109.47116 * 270.31317 * 1 2 3 21 21 H 1.09002 * 109.47218 * 30.31903 * 1 2 3 22 22 H 1.09003 * 109.47400 * 150.31679 * 1 2 3 23 23 H 1.08001 * 125.45830 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47068 * 29.72129 * 5 4 3 25 25 H 1.09001 * 109.47372 * 149.72217 * 5 4 3 26 26 H 1.09002 * 109.47153 * 300.00008 * 6 5 4 27 27 H 1.08998 * 109.47533 * 59.99637 * 6 5 4 28 28 H 0.96994 * 119.99814 * 180.02562 * 10 9 7 29 29 H 1.07999 * 125.89961 * 180.29366 * 15 4 3 30 30 H 0.96699 * 116.99765 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3125 1.0763 0.0000 4 7 3.6119 0.6608 -0.0037 5 6 4.7748 1.5519 -0.0086 6 6 5.1792 1.8546 -1.4528 7 6 6.3750 2.7717 -1.4580 8 1 6.8040 3.1050 -0.5245 9 6 6.9222 3.1845 -2.6543 10 7 7.9661 3.9845 -2.6588 11 14 6.1816 2.6064 -4.2689 12 1 5.1328 3.5638 -4.7034 13 1 7.2446 2.5338 -5.3032 14 1 5.5785 1.2621 -4.0836 15 6 3.6744 -0.6840 0.0037 16 6 2.3863 -1.1748 0.0065 17 6 1.9767 -2.5877 0.0138 18 8 0.7965 -2.8785 0.0150 19 8 2.9103 -3.5600 0.0192 20 1 -0.3634 0.0056 1.0277 21 1 -0.3634 0.8871 -0.5188 22 1 -0.3634 -0.8928 -0.5089 23 1 1.9837 2.1050 0.0004 24 1 4.5220 2.4820 0.5005 25 1 5.6047 1.0692 0.5074 26 1 5.4320 0.9246 -1.9619 27 1 4.3494 2.3373 -1.9690 28 1 8.3507 4.2751 -3.5005 29 1 4.5776 -1.2760 0.0074 30 1 2.5929 -4.4733 0.0235 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724658965.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:35 Heat of formation + Delta-G solvation = -60.750747 kcal Electronic energy + Delta-G solvation = -14617.816990 eV Core-core repulsion = 11992.403296 eV Total energy + Delta-G solvation = -2625.413694 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.05621 -39.38784 -35.79621 -34.47061 -32.63372 -30.82087 -29.52110 -26.81598 -25.11988 -23.00607 -21.01507 -20.05039 -19.07666 -17.64781 -17.34460 -16.48795 -15.41641 -15.10481 -14.65288 -13.97270 -13.91415 -13.30104 -13.06331 -12.92117 -12.80950 -12.50833 -12.13869 -11.64269 -11.35407 -11.27685 -11.20258 -10.50118 -10.33428 -10.27076 -10.01827 -9.51606 -8.74399 -8.25033 -8.00517 -6.24926 -4.27280 1.72597 2.63570 3.11376 3.19031 3.27708 3.31177 3.51598 3.52900 4.28048 5.03537 5.09249 5.18573 5.25019 5.59054 5.64352 5.81580 5.82688 5.94859 6.02678 6.13902 6.23949 6.48328 6.69114 6.86147 6.93593 6.98776 7.36702 7.40495 7.59963 8.22280 8.24948 8.75360 9.35275 10.87405 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.036842 B = 0.006256 C = 0.006060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.827782 B = 4474.617081 C = 4619.280505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.115 4.115 3 C -0.018 4.018 4 N -0.421 5.421 5 C 0.105 3.895 6 C -0.024 4.024 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.075 3.925 10 N -0.895 5.895 11 Si 0.879 3.121 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.087 3.913 16 C -0.247 4.247 17 C 0.559 3.441 18 O -0.534 6.534 19 O -0.520 6.520 20 H 0.060 0.940 21 H 0.058 0.942 22 H 0.072 0.928 23 H 0.167 0.833 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.024 0.976 27 H 0.021 0.979 28 H 0.267 0.733 29 H 0.176 0.824 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.896 -9.247 5.061 14.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C -0.145 4.145 4 N -0.092 5.092 5 C -0.015 4.015 6 C -0.062 4.062 7 C -0.570 4.570 8 H 0.094 0.906 9 C -0.128 4.128 10 N -0.532 5.532 11 Si 0.706 3.294 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.190 1.190 15 C -0.053 4.053 16 C -0.255 4.255 17 C 0.406 3.594 18 O -0.425 6.425 19 O -0.332 6.332 20 H 0.079 0.921 21 H 0.077 0.923 22 H 0.091 0.909 23 H 0.184 0.816 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.193 0.807 30 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -9.657 -8.524 4.943 13.797 hybrid contribution -0.315 -0.764 -0.969 1.273 sum -9.972 -9.288 3.974 14.195 Atomic orbital electron populations 1.20154 0.89554 1.02334 1.01587 1.20370 0.95134 0.89948 1.06602 1.21569 0.82262 0.99258 1.11452 1.44281 1.07606 1.06155 1.51183 1.22341 0.84463 0.92716 1.01954 1.19932 0.97680 0.97906 0.90640 1.20847 1.12237 1.28944 0.94947 0.90563 1.24950 0.94467 0.94237 0.99192 1.69887 1.22384 1.33706 1.27227 0.86793 0.79163 0.80014 0.83468 1.20067 1.21039 1.18981 1.22363 0.98357 0.83763 1.00851 1.19435 0.93192 0.88835 1.24086 1.19959 0.82750 0.85350 0.71346 1.90817 1.19006 1.84045 1.48649 1.84619 1.42359 1.19645 1.86541 0.92102 0.92272 0.90879 0.81585 0.89187 0.89238 0.95730 0.96108 0.92338 0.80724 0.73676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.98 36.00 0.36 -0.71 16 2 C -0.12 -1.82 6.35 -102.53 -0.65 -2.47 16 3 C -0.02 -0.28 11.24 -16.85 -0.19 -0.47 16 4 N -0.42 -6.85 2.68 -116.83 -0.31 -7.16 16 5 C 0.10 1.81 5.94 -4.04 -0.02 1.78 16 6 C -0.02 -0.52 4.37 -27.89 -0.12 -0.64 16 7 C -0.53 -13.96 9.66 -34.44 -0.33 -14.29 16 8 H 0.08 2.12 7.99 -52.49 -0.42 1.70 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 11 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 15 C 0.09 1.35 11.22 -16.47 -0.18 1.17 16 16 C -0.25 -4.01 6.32 -103.01 -0.65 -4.66 16 17 C 0.56 8.65 8.32 34.33 0.29 8.93 16 18 O -0.53 -9.27 16.12 -19.31 -0.31 -9.58 16 19 O -0.52 -6.27 13.28 -40.74 -0.54 -6.81 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 1.07 6.86 -51.93 -0.36 0.71 16 23 H 0.17 2.17 8.06 -52.49 -0.42 1.75 16 24 H 0.09 1.47 8.13 -51.93 -0.42 1.04 16 25 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 26 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 27 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.18 2.34 8.06 -52.49 -0.42 1.92 16 30 H 0.41 2.89 9.11 45.56 0.42 3.30 16 LS Contribution 268.83 15.07 4.05 4.05 Total: -1.00 -31.57 268.83 -5.45 -37.02 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -2.83 Total: 1.13 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -1.61 Total: -9.39 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.46 Total: -32.63 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.85 Total: -16.39 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.57 -5.45 -37.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724658965.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.732 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds