Wall clock time and date at job start Mon Mar 30 2020 03:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34434 * 126.81419 * 2 1 4 4 N 1.36422 * 109.08522 * 180.16337 * 3 2 1 5 5 C 1.46505 * 124.80948 * 179.81790 * 4 3 2 6 6 C 1.52997 * 109.47212 * 269.72069 * 5 4 3 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00362 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99850 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47052 * 89.99717 * 11 9 7 13 13 H 1.48495 * 109.47307 * 209.99656 * 11 9 7 14 14 H 1.48500 * 109.47143 * 330.00164 * 11 9 7 15 15 C 1.34626 * 110.38467 * 359.55294 * 4 3 2 16 16 C 1.37843 * 108.20328 * 0.26423 * 15 4 3 17 17 C 1.47107 * 127.02469 * 179.97438 * 16 15 4 18 18 O 1.21551 * 120.00456 * 180.02562 * 17 16 15 19 19 O 1.34792 * 119.99909 * 0.03106 * 17 16 15 20 20 H 1.09006 * 109.47116 * 270.31317 * 1 2 3 21 21 H 1.09002 * 109.47218 * 30.31903 * 1 2 3 22 22 H 1.09003 * 109.47400 * 150.31679 * 1 2 3 23 23 H 1.08001 * 125.45830 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47068 * 29.72129 * 5 4 3 25 25 H 1.09001 * 109.47372 * 149.72217 * 5 4 3 26 26 H 1.09002 * 109.47153 * 300.00008 * 6 5 4 27 27 H 1.08998 * 109.47533 * 59.99637 * 6 5 4 28 28 H 0.96994 * 119.99814 * 180.02562 * 10 9 7 29 29 H 1.07999 * 125.89961 * 180.29366 * 15 4 3 30 30 H 0.96699 * 116.99765 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3125 1.0763 0.0000 4 7 3.6119 0.6608 -0.0037 5 6 4.7748 1.5519 -0.0086 6 6 5.1792 1.8546 -1.4528 7 6 6.3750 2.7717 -1.4580 8 1 6.8040 3.1050 -0.5245 9 6 6.9222 3.1845 -2.6543 10 7 7.9661 3.9845 -2.6588 11 14 6.1816 2.6064 -4.2689 12 1 5.1328 3.5638 -4.7034 13 1 7.2446 2.5338 -5.3032 14 1 5.5785 1.2621 -4.0836 15 6 3.6744 -0.6840 0.0037 16 6 2.3863 -1.1748 0.0065 17 6 1.9767 -2.5877 0.0138 18 8 0.7965 -2.8785 0.0150 19 8 2.9103 -3.5600 0.0192 20 1 -0.3634 0.0056 1.0277 21 1 -0.3634 0.8871 -0.5188 22 1 -0.3634 -0.8928 -0.5089 23 1 1.9837 2.1050 0.0004 24 1 4.5220 2.4820 0.5005 25 1 5.6047 1.0692 0.5074 26 1 5.4320 0.9246 -1.9619 27 1 4.3494 2.3373 -1.9690 28 1 8.3507 4.2751 -3.5005 29 1 4.5776 -1.2760 0.0074 30 1 2.5929 -4.4733 0.0235 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724658965.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:35 Heat of formation + Delta-G solvation = -80.578024 kcal Electronic energy + Delta-G solvation = -14618.676765 eV Core-core repulsion = 11992.403296 eV Total energy + Delta-G solvation = -2626.273470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.25251 -40.53010 -36.89727 -36.07572 -34.37361 -32.24891 -30.87406 -28.18536 -26.50982 -24.42509 -22.56533 -21.25075 -20.24447 -19.20968 -18.71054 -17.86469 -16.70367 -16.42637 -16.29815 -15.43608 -15.26182 -14.71729 -14.60014 -14.18760 -13.94762 -13.86015 -13.39355 -13.20978 -12.93698 -12.45697 -12.42340 -12.09894 -12.03800 -11.83568 -11.54357 -11.45654 -10.82763 -9.50003 -9.17776 -8.35045 -6.40625 0.53831 1.32648 1.36054 1.44514 1.45948 1.91167 2.30361 2.33875 2.46378 3.00946 3.85704 4.02251 4.09726 4.32001 4.34718 4.56910 4.64218 4.74712 4.88486 4.94716 5.15342 5.16362 5.21491 5.41867 5.50889 5.70488 5.83190 6.14524 6.14765 6.32957 6.67826 7.19066 7.25212 8.80545 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.036842 B = 0.006256 C = 0.006060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.827782 B = 4474.617081 C = 4619.280505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.129 4.129 3 C -0.024 4.024 4 N -0.428 5.428 5 C 0.118 3.882 6 C -0.019 4.019 7 C -0.531 4.531 8 H 0.049 0.951 9 C 0.016 3.984 10 N -0.942 5.942 11 Si 0.941 3.059 12 H -0.269 1.269 13 H -0.284 1.284 14 H -0.254 1.254 15 C 0.085 3.915 16 C -0.267 4.267 17 C 0.562 3.438 18 O -0.559 6.559 19 O -0.512 6.512 20 H 0.069 0.931 21 H 0.077 0.923 22 H 0.058 0.942 23 H 0.187 0.813 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.022 0.978 27 H 0.021 0.979 28 H 0.268 0.732 29 H 0.194 0.806 30 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.954 -10.154 4.873 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.134 4.134 3 C -0.150 4.150 4 N -0.099 5.099 5 C -0.002 4.002 6 C -0.057 4.057 7 C -0.570 4.570 8 H 0.067 0.933 9 C -0.182 4.182 10 N -0.582 5.582 11 Si 0.765 3.235 12 H -0.194 1.194 13 H -0.210 1.210 14 H -0.178 1.178 15 C -0.054 4.054 16 C -0.276 4.276 17 C 0.410 3.590 18 O -0.453 6.453 19 O -0.325 6.325 20 H 0.087 0.913 21 H 0.096 0.904 22 H 0.077 0.923 23 H 0.204 0.796 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.211 0.789 30 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -10.727 -9.470 4.768 15.083 hybrid contribution 0.038 -0.526 -0.832 0.986 sum -10.689 -9.996 3.935 15.155 Atomic orbital electron populations 1.20154 0.88337 1.02509 1.02210 1.20740 0.96211 0.90022 1.06474 1.21955 0.81830 1.00253 1.10985 1.44196 1.07505 1.06235 1.51995 1.22045 0.85393 0.93718 0.99048 1.19802 0.95667 0.96478 0.93765 1.21193 1.13186 1.28797 0.93780 0.93251 1.25811 0.94930 0.94553 1.02937 1.70020 1.24301 1.35732 1.28170 0.85800 0.78426 0.80043 0.79219 1.19375 1.20961 1.17767 1.22695 0.98936 0.83659 1.00122 1.19745 0.93747 0.89620 1.24466 1.19893 0.82624 0.85717 0.70813 1.90807 1.20029 1.84486 1.49937 1.84562 1.41392 1.20822 1.85770 0.91257 0.90369 0.92336 0.79592 0.88200 0.88191 0.96002 0.96104 0.92283 0.78933 0.71116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.89 9.98 71.23 0.71 -1.18 16 2 C -0.13 -3.83 6.35 -18.51 -0.12 -3.94 16 3 C -0.02 -0.68 11.24 83.11 0.93 0.26 16 4 N -0.43 -12.90 2.68 -523.55 -1.40 -14.31 16 5 C 0.12 3.83 5.94 86.38 0.51 4.34 16 6 C -0.02 -0.80 4.37 29.85 0.13 -0.67 16 7 C -0.53 -27.73 9.66 25.60 0.25 -27.48 16 8 H 0.05 2.77 7.99 -2.91 -0.02 2.75 16 9 C 0.02 0.88 5.47 84.65 0.46 1.35 16 10 N -0.94 -55.97 13.96 21.45 0.30 -55.67 16 11 Si 0.94 42.42 27.47 68.60 1.88 44.30 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 15 C 0.09 2.47 11.22 84.17 0.94 3.41 16 16 C -0.27 -8.20 6.32 -18.82 -0.12 -8.32 16 17 C 0.56 16.45 8.32 70.15 0.58 17.03 16 18 O -0.56 -18.77 16.12 19.67 0.32 -18.45 16 19 O -0.51 -11.14 13.28 -57.04 -0.76 -11.90 16 20 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 21 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.06 1.65 6.86 -2.39 -0.02 1.63 16 23 H 0.19 4.35 8.06 -2.91 -0.02 4.32 16 24 H 0.10 3.05 8.13 -2.39 -0.02 3.03 16 25 H 0.10 3.03 8.13 -2.39 -0.02 3.01 16 26 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 27 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 28 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 29 H 0.19 4.67 8.06 -2.91 -0.02 4.64 16 30 H 0.43 5.02 9.11 -74.06 -0.67 4.34 16 Total: -1.00 -66.64 268.83 5.05 -61.59 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.42 Total: 9.64 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 4.29 Total: -15.20 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -1.11 Total: -69.98 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.44 Total: -30.36 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.88 Total: 44.30 kcal Total: -66.64 5.05 -61.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724658965.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.984 kcal (2) G-P(sol) polarization free energy of solvation -66.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds