Wall clock time and date at job start Mon Mar 30 2020 02:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00087 * 2 1 4 4 H 1.48499 * 109.47057 * 240.00131 * 3 2 1 5 5 H 1.48499 * 109.46976 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.46836 * 120.00072 * 3 2 1 7 7 C 1.37876 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00430 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.53935 * 113.73346 * 180.02562 * 9 7 2 11 11 N 1.47962 * 86.30001 * 138.02887 * 10 9 7 12 12 C 1.39155 * 111.00054 * 222.47576 * 11 10 9 13 13 C 1.39212 * 120.05795 * 180.02562 * 12 11 10 14 14 N 1.32008 * 119.92680 * 179.97438 * 13 12 11 15 15 C 1.32400 * 120.06011 * 359.97438 * 14 13 12 16 16 F 1.35103 * 119.94096 * 179.97438 * 15 14 13 17 17 C 1.38468 * 120.12260 * 0.02562 * 15 14 13 18 18 N 1.32221 * 120.06861 * 359.67740 * 17 15 14 19 19 C 1.48187 * 90.67343 * 335.41160 * 11 10 9 20 20 H 0.97001 * 119.99956 * 0.02562 * 1 2 3 21 21 H 1.09005 * 112.93193 * 48.44239 * 9 7 2 22 22 H 1.09002 * 113.76229 * 252.40284 * 10 9 7 23 23 H 1.09005 * 113.75703 * 23.65809 * 10 9 7 24 24 H 1.08000 * 120.03723 * 0.02562 * 13 12 11 25 25 H 1.08000 * 119.96783 * 179.97438 * 17 15 14 26 26 H 1.09005 * 113.65869 * 270.26633 * 19 11 10 27 27 H 1.09002 * 113.92722 * 138.95266 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.1616 -3.7403 -0.0005 11 7 1.2200 -4.3127 0.9869 12 6 1.9042 -4.9567 2.0133 13 6 1.1983 -5.5651 3.0475 14 7 1.8500 -6.1758 4.0196 15 6 3.1735 -6.2103 4.0112 16 9 3.8381 -6.8355 5.0076 17 6 3.8779 -5.6059 2.9837 18 7 3.2301 -4.9980 2.0044 19 6 0.7981 -2.9532 1.3988 20 1 -0.4850 0.8401 -0.0004 21 1 0.4616 -2.5338 -0.7514 22 1 2.1782 -4.2728 -0.9515 23 1 3.1581 -3.5538 0.3998 24 1 0.1186 -5.5382 3.0541 25 1 4.9575 -5.6352 2.9796 26 1 1.3952 -2.5369 2.2102 27 1 -0.2745 -2.8550 1.5666 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853802068.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:41 Heat of formation + Delta-G solvation = 52.410944 kcal Electronic energy + Delta-G solvation = -14606.249648 eV Core-core repulsion = 11894.575458 eV Total energy + Delta-G solvation = -2711.674189 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 223.082 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.00821 -41.19640 -38.63794 -34.20741 -32.90623 -31.13809 -27.74393 -25.81484 -24.84496 -24.27247 -22.30896 -18.99765 -18.04841 -17.97529 -17.39817 -16.27009 -15.90822 -14.93354 -14.57921 -14.44374 -14.22692 -13.74897 -13.56260 -12.83017 -12.15729 -11.93155 -11.41812 -11.27368 -11.04879 -11.00951 -10.58087 -10.22651 -9.67042 -9.36426 -9.23058 -9.01071 -8.58550 -8.03169 -6.16984 -4.22044 0.71174 1.05349 3.24955 3.30321 3.32665 3.41148 3.53932 3.95501 4.26570 4.33053 4.55242 5.02873 5.13304 5.15720 5.47796 5.84501 6.05461 6.19467 6.30091 6.52111 6.61328 6.67531 6.81861 7.17198 7.54640 7.66273 7.74064 7.83031 8.21050 8.81264 9.44014 10.92320 Molecular weight = 223.08amu Principal moments of inertia in cm(-1) A = 0.046190 B = 0.006627 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.046014 B = 4224.099544 C = 4425.928062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.040 3.960 10 C 0.010 3.990 11 N -0.444 5.444 12 C 0.244 3.756 13 C 0.086 3.914 14 N -0.456 5.456 15 C 0.209 3.791 16 F -0.111 7.111 17 C 0.066 3.934 18 N -0.446 5.446 19 C 0.028 3.972 20 H 0.264 0.736 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.181 0.819 25 H 0.177 0.823 26 H 0.063 0.937 27 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.098 -8.429 4.791 10.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.079 0.921 9 C 0.021 3.979 10 C -0.118 4.118 11 N -0.164 5.164 12 C 0.010 3.990 13 C -0.079 4.079 14 N -0.175 5.175 15 C 0.054 3.946 16 F -0.091 7.091 17 C -0.097 4.097 18 N -0.164 5.164 19 C -0.097 4.097 20 H 0.074 0.926 21 H 0.085 0.915 22 H 0.090 0.910 23 H 0.107 0.893 24 H 0.198 0.802 25 H 0.194 0.806 26 H 0.081 0.919 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.471 -8.791 4.607 10.515 hybrid contribution 1.094 1.074 0.671 1.673 sum 4.565 -7.717 5.279 10.404 Atomic orbital electron populations 1.69934 1.06011 1.27164 1.49142 1.25022 0.94862 0.99307 0.94355 0.86632 0.79650 0.82818 0.78807 1.20009 1.21184 1.20198 1.21001 0.92938 0.89933 1.51841 0.92129 1.20390 0.94185 0.91632 0.91740 1.24211 0.97068 0.96404 0.94069 1.66254 1.25952 1.17622 1.06540 1.21977 0.88780 0.94966 0.93280 1.23167 1.01561 0.94334 0.88819 1.67665 1.07726 1.16126 1.25998 1.18994 0.88520 0.98621 0.88481 1.91607 1.78169 1.80049 1.59239 1.23452 1.02057 0.94763 0.89471 1.68617 1.09000 1.14698 1.24115 1.24443 1.00978 0.81570 1.02744 0.92615 0.91510 0.90988 0.89259 0.80196 0.80625 0.91901 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.27 13.27 55.43 0.74 -23.53 15 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 15 3 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 15 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 15 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.52 -13.45 8.77 -34.44 -0.30 -13.76 15 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 15 9 C 0.04 0.93 3.61 -90.83 -0.33 0.60 15 10 C 0.01 0.20 7.21 -2.77 -0.02 0.18 15 11 N -0.44 -8.52 6.27 -175.66 -1.10 -9.62 15 12 C 0.24 4.30 5.89 -154.62 -0.91 3.39 15 13 C 0.09 1.36 11.09 -17.11 -0.19 1.17 15 14 N -0.46 -7.30 10.50 -13.24 -0.14 -7.44 15 15 C 0.21 3.11 8.43 -17.22 -0.15 2.97 15 16 F -0.11 -1.55 17.29 2.25 0.04 -1.51 15 17 C 0.07 0.93 11.20 -17.30 -0.19 0.74 15 18 N -0.45 -7.65 8.39 -12.16 -0.10 -7.76 15 19 C 0.03 0.59 7.45 -2.65 -0.02 0.57 15 20 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 21 H 0.07 1.69 8.13 -51.93 -0.42 1.27 15 22 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 23 H 0.09 1.85 6.64 -51.93 -0.34 1.51 15 24 H 0.18 2.42 8.06 -52.49 -0.42 1.99 15 25 H 0.18 1.85 8.06 -52.49 -0.42 1.42 15 26 H 0.06 1.38 7.86 -51.93 -0.41 0.98 15 27 H 0.08 1.72 8.14 -51.93 -0.42 1.30 15 LS Contribution 246.83 15.07 3.72 3.72 Total: -1.00 -27.35 246.83 -6.49 -33.84 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -2.41 Total: -0.61 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.21 Total: -2.44 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.61 Total: -48.35 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.35 -6.49 -33.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853802068.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.251 kcal (2) G-P(sol) polarization free energy of solvation -27.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds