Wall clock time and date at job start Mon Mar 30 2020 02:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00058 * 2 1 4 4 H 1.48497 * 109.46955 * 270.00139 * 3 2 1 5 5 H 1.48498 * 109.46898 * 29.99696 * 3 2 1 6 6 H 1.48495 * 109.47029 * 149.99805 * 3 2 1 7 7 C 1.37879 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99856 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.53510 * 114.16875 * 180.02562 * 9 7 2 11 11 N 1.47478 * 87.93164 * 220.33116 * 10 9 7 12 12 C 1.38573 * 111.00037 * 138.70594 * 11 10 9 13 13 C 1.39472 * 120.51418 * 180.02562 * 12 11 10 14 14 C 1.38464 * 118.31059 * 180.27199 * 13 12 11 15 15 F 1.35098 * 120.43073 * 179.71981 * 14 13 12 16 16 N 1.32792 * 119.14085 * 359.50872 * 14 13 12 17 17 C 1.31764 * 120.95751 * 0.47859 * 16 14 13 18 18 N 1.31750 * 121.86304 * 359.77679 * 17 16 14 19 19 C 1.47483 * 87.83827 * 27.01069 * 11 10 9 20 20 H 0.96994 * 120.00273 * 359.97438 * 1 2 3 21 21 H 1.08997 * 113.25922 * 312.95309 * 9 7 2 22 22 H 1.08999 * 113.47719 * 105.56274 * 10 9 7 23 23 H 1.09000 * 113.53098 * 335.10528 * 10 9 7 24 24 H 1.08002 * 120.84102 * 359.97438 * 13 12 11 25 25 H 1.08007 * 119.06633 * 179.75306 * 17 16 14 26 26 H 1.08997 * 113.47460 * 87.75488 * 19 11 10 27 27 H 1.08994 * 113.47891 * 218.22489 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.1496 -3.7438 0.0028 11 7 1.2076 -4.3591 -0.9505 12 6 1.8853 -5.0467 -1.9446 13 6 1.1839 -5.7058 -2.9540 14 6 1.9068 -6.3835 -3.9211 15 9 1.2710 -7.0413 -4.9152 16 7 3.2334 -6.3749 -3.8613 17 6 3.8642 -5.7412 -2.8935 18 7 3.2150 -5.0886 -1.9509 19 6 0.8555 -2.9978 -1.3953 20 1 -0.4850 0.8400 0.0004 21 1 0.4451 -2.5302 0.7350 22 1 2.1863 -4.2520 0.9664 23 1 3.1393 -3.5663 -0.4180 24 1 0.1042 -5.6921 -2.9779 25 1 4.9439 -5.7575 -2.8722 26 1 1.4995 -2.6203 -2.1895 27 1 -0.2045 -2.8738 -1.6166 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853805004.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:07 Heat of formation + Delta-G solvation = 37.376093 kcal Electronic energy + Delta-G solvation = -14614.713539 eV Core-core repulsion = 11902.387390 eV Total energy + Delta-G solvation = -2712.326149 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 223.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.35200 -42.55471 -40.39595 -35.21067 -34.14972 -33.20221 -30.01962 -27.02169 -26.76624 -25.37214 -23.78912 -20.82855 -19.66885 -19.23265 -18.38595 -17.48921 -17.02062 -16.65744 -16.41621 -16.21615 -15.84671 -15.34135 -14.94221 -14.43250 -14.03842 -13.32875 -13.19498 -12.83908 -12.39982 -12.24817 -11.92832 -11.59652 -11.37370 -11.02227 -10.91997 -10.64403 -10.54488 -9.94463 -8.17435 -6.28275 -0.33218 -0.32381 1.44325 1.46518 1.56255 2.10190 2.36451 2.43663 2.65859 3.01006 3.13719 3.54376 3.80320 3.94715 4.15026 4.34862 4.43992 4.56074 4.68418 4.88119 4.97334 5.04719 5.24394 5.60264 5.68028 5.80328 6.10081 6.25266 6.80459 6.81979 7.40971 8.92210 Molecular weight = 223.08amu Principal moments of inertia in cm(-1) A = 0.047191 B = 0.006557 C = 0.006397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.193699 B = 4269.462077 C = 4376.184374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.020 3.980 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.027 3.973 10 C 0.021 3.979 11 N -0.443 5.443 12 C 0.345 3.655 13 C -0.250 4.250 14 C 0.362 3.638 15 F -0.098 7.098 16 N -0.579 5.579 17 C 0.354 3.646 18 N -0.568 5.568 19 C 0.038 3.962 20 H 0.264 0.736 21 H 0.045 0.955 22 H 0.079 0.921 23 H 0.092 0.908 24 H 0.172 0.828 25 H 0.246 0.754 26 H 0.055 0.945 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.514 -9.109 -5.537 11.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.180 4.180 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.007 3.993 10 C -0.106 4.106 11 N -0.162 5.162 12 C 0.108 3.892 13 C -0.276 4.276 14 C 0.202 3.798 15 F -0.077 7.077 16 N -0.302 5.302 17 C 0.066 3.934 18 N -0.288 5.288 19 C -0.088 4.088 20 H 0.073 0.927 21 H 0.063 0.937 22 H 0.097 0.903 23 H 0.110 0.890 24 H 0.189 0.811 25 H 0.262 0.738 26 H 0.074 0.926 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.735 -9.498 -5.323 11.873 hybrid contribution -0.421 1.047 -0.549 1.255 sum 4.314 -8.450 -5.872 11.158 Atomic orbital electron populations 1.70055 1.07380 1.27801 1.50392 1.25770 0.95585 1.02542 0.94110 0.85587 0.78886 0.79170 0.78240 1.20229 1.20961 1.18943 1.21288 0.93131 0.90957 1.51293 0.92047 1.20112 0.94725 0.92287 0.92149 1.23934 0.96686 0.94504 0.95482 1.66286 1.27226 1.14299 1.08350 1.20999 0.88309 0.90480 0.89453 1.22204 1.04326 1.04176 0.96872 1.18196 0.87853 0.89133 0.84626 1.91661 1.79884 1.77720 1.58419 1.67937 1.08370 1.25055 1.28794 1.25481 1.02208 0.84111 0.81644 1.68572 1.08858 1.22245 1.29169 1.23957 1.00664 0.82775 1.01410 0.92665 0.93727 0.90266 0.89016 0.81065 0.73798 0.92639 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.12 13.26 21.45 0.28 -50.84 15 2 C 0.02 1.06 5.46 84.66 0.46 1.52 15 3 Si 0.96 41.54 29.54 68.60 2.03 43.57 15 4 H -0.28 -11.79 7.11 99.48 0.71 -11.09 15 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 15 6 H -0.27 -11.13 7.11 99.48 0.71 -10.43 15 7 C -0.53 -27.49 8.82 25.60 0.23 -27.27 15 8 H 0.06 3.13 7.81 -2.91 -0.02 3.11 15 9 C 0.03 1.27 3.77 -11.20 -0.04 1.23 15 10 C 0.02 0.87 6.96 83.58 0.58 1.45 15 11 N -0.44 -17.06 6.43 -731.37 -4.70 -21.76 15 12 C 0.35 11.88 5.86 133.10 0.78 12.66 15 13 C -0.25 -7.46 10.08 22.62 0.23 -7.23 15 14 C 0.36 10.28 8.50 84.60 0.72 11.00 15 15 F -0.10 -2.59 17.30 44.97 0.78 -1.81 15 16 N -0.58 -16.16 10.45 -201.32 -2.10 -18.26 15 17 C 0.35 9.10 12.28 180.91 2.22 11.33 15 18 N -0.57 -18.26 8.36 -197.69 -1.65 -19.91 15 19 C 0.04 1.64 7.22 83.58 0.60 2.25 15 20 H 0.26 13.99 8.31 -92.71 -0.77 13.22 15 21 H 0.04 2.35 8.11 -2.39 -0.02 2.33 15 22 H 0.08 3.00 8.14 -2.39 -0.02 2.98 15 23 H 0.09 3.72 6.65 -2.39 -0.02 3.70 15 24 H 0.17 4.54 8.06 -2.91 -0.02 4.52 15 25 H 0.25 3.97 8.06 -2.91 -0.02 3.95 15 26 H 0.06 2.46 7.85 -2.39 -0.02 2.44 15 27 H 0.07 3.19 8.14 -2.39 -0.02 3.17 15 Total: -1.00 -57.27 246.74 1.60 -55.67 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 1.19 Total: 6.40 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 5.78 Total: 6.94 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -8.17 Total: -110.77 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.78 Total: -1.81 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -57.27 1.60 -55.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853805004.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.049 kcal (2) G-P(sol) polarization free energy of solvation -57.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds