Wall clock time and date at job start Mon Mar 30 2020 02:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47446 * 270.00001 * 3 2 1 5 5 H 1.48503 * 109.47026 * 29.99636 * 3 2 1 6 6 H 1.48500 * 109.47199 * 149.99533 * 3 2 1 7 7 C 1.37883 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99944 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99455 * 0.02562 * 7 2 1 10 10 C 1.53516 * 114.16717 * 179.97438 * 9 7 2 11 11 N 1.47478 * 87.93216 * 220.32438 * 10 9 7 12 12 C 1.39119 * 111.00008 * 138.70206 * 11 10 9 13 13 N 1.32563 * 120.10542 * 0.02562 * 12 11 10 14 14 C 1.32309 * 119.93978 * 179.68929 * 13 12 11 15 15 C 1.38065 * 120.16669 * 0.56922 * 14 13 12 16 16 N 1.32354 * 120.21994 * 359.42724 * 15 14 13 17 17 C 1.32069 * 120.05430 * 0.28117 * 16 15 14 18 18 F 1.35095 * 120.08487 * 180.02562 * 17 16 15 19 19 C 1.47486 * 87.83602 * 27.01006 * 11 10 9 20 20 H 0.97000 * 119.99774 * 0.02562 * 1 2 3 21 21 H 1.09010 * 113.25785 * 312.94582 * 9 7 2 22 22 H 1.09003 * 113.47230 * 105.56369 * 10 9 7 23 23 H 1.08996 * 113.53149 * 335.10216 * 10 9 7 24 24 H 1.08000 * 119.91795 * 180.27374 * 14 13 12 25 25 H 1.08002 * 119.89335 * 179.71344 * 15 14 13 26 26 H 1.09004 * 113.47566 * 87.75546 * 19 11 10 27 27 H 1.09001 * 113.48018 * 218.21954 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0047 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1498 -3.7437 0.0005 11 7 1.2077 -4.3584 -0.9532 12 6 1.8880 -5.0477 -1.9519 13 7 3.2131 -5.0838 -1.9506 14 6 3.8567 -5.7456 -2.8985 15 6 3.1518 -6.3891 -3.8961 16 7 1.8287 -6.3573 -3.9037 17 6 1.1773 -5.7042 -2.9586 18 9 -0.1732 -5.6718 -2.9654 19 6 0.8556 -2.9966 -1.3968 20 1 -0.4850 0.8401 -0.0004 21 1 0.4447 -2.5305 0.7333 22 1 2.1865 -4.2528 0.9637 23 1 3.1395 -3.5659 -0.4202 24 1 4.9361 -5.7784 -2.8946 25 1 3.6817 -6.9241 -4.6703 26 1 1.4996 -2.6184 -2.1908 27 1 -0.2045 -2.8724 -1.6180 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858624649.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:53 Heat of formation + Delta-G solvation = 56.697942 kcal Electronic energy + Delta-G solvation = -14842.940405 eV Core-core repulsion = 12131.452114 eV Total energy + Delta-G solvation = -2711.488291 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 223.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.77733 -41.16293 -38.90595 -34.15697 -32.82137 -31.17916 -28.02990 -25.53037 -24.97925 -23.87789 -22.51332 -18.96574 -18.08973 -17.90412 -17.35423 -16.20565 -15.90181 -14.95742 -14.55820 -14.40626 -14.07472 -13.68257 -13.25862 -12.95493 -12.14615 -11.93044 -11.51594 -11.21936 -11.01730 -10.89938 -10.55069 -10.14460 -9.64666 -9.34509 -9.18279 -8.95855 -8.55555 -8.10470 -6.14439 -4.19677 0.72376 1.05115 3.24875 3.32322 3.34954 3.37996 3.55750 4.03413 4.27446 4.34356 4.63516 5.00756 5.15291 5.18402 5.50481 5.81430 6.05504 6.20873 6.29331 6.56467 6.62851 6.71081 6.87156 7.16967 7.58019 7.68728 7.72878 7.85613 8.24024 8.84227 9.46149 10.95050 Molecular weight = 223.08amu Principal moments of inertia in cm(-1) A = 0.042617 B = 0.007539 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.861518 B = 3713.146186 C = 3986.305367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.045 3.955 10 C 0.007 3.993 11 N -0.438 5.438 12 C 0.240 3.760 13 N -0.446 5.446 14 C 0.060 3.940 15 C 0.043 3.957 16 N -0.460 5.460 17 C 0.257 3.743 18 F -0.095 7.095 19 C 0.020 3.980 20 H 0.264 0.736 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.175 0.825 25 H 0.175 0.825 26 H 0.061 0.939 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -9.251 -5.590 12.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.025 3.975 10 C -0.121 4.121 11 N -0.158 5.158 12 C 0.003 3.997 13 N -0.165 5.165 14 C -0.100 4.100 15 C -0.115 4.115 16 N -0.180 5.180 17 C 0.096 3.904 18 F -0.074 7.074 19 C -0.105 4.105 20 H 0.073 0.927 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.108 0.892 24 H 0.192 0.808 25 H 0.192 0.808 26 H 0.080 0.920 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.226 -9.573 -5.348 12.147 hybrid contribution 0.721 1.115 -0.549 1.437 sum 5.947 -8.458 -5.896 11.903 Atomic orbital electron populations 1.69959 1.06045 1.27057 1.49043 1.25044 0.94857 0.99355 0.94325 0.86562 0.79965 0.83126 0.78200 1.20616 1.21062 1.19659 1.20980 0.92930 0.89774 1.51762 0.91997 1.20177 0.94501 0.91390 0.91404 1.24127 0.97123 0.96160 0.94644 1.66662 1.26474 1.15160 1.07489 1.21707 0.89032 0.96353 0.92618 1.68657 1.07180 1.15854 1.24762 1.23685 1.02083 0.93579 0.90698 1.23337 0.88198 1.00185 0.99819 1.67670 1.10869 1.16201 1.23292 1.18666 0.79775 0.98271 0.93722 1.91646 1.26034 1.94099 1.95614 1.24347 1.01324 0.81814 1.03014 0.92653 0.91109 0.91285 0.89246 0.80816 0.80776 0.92045 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.84 13.26 55.43 0.74 -24.11 15 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 15 3 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 7 C -0.52 -13.66 8.82 -34.44 -0.30 -13.97 15 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 15 9 C 0.04 1.09 3.77 -91.24 -0.34 0.75 15 10 C 0.01 0.15 6.96 -7.54 -0.05 0.10 15 11 N -0.44 -9.21 6.28 -182.42 -1.14 -10.35 15 12 C 0.24 4.57 5.86 -154.58 -0.91 3.67 15 13 N -0.45 -7.67 8.38 -12.17 -0.10 -7.77 15 14 C 0.06 0.75 11.21 -17.41 -0.20 0.56 15 15 C 0.04 0.52 11.21 -17.39 -0.19 0.33 15 16 N -0.46 -7.36 10.50 -13.24 -0.14 -7.50 15 17 C 0.26 4.69 8.45 -16.93 -0.14 4.54 15 18 F -0.09 -1.80 17.11 2.25 0.04 -1.76 15 19 C 0.02 0.47 7.23 -7.54 -0.05 0.41 15 20 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 21 H 0.07 1.87 8.11 -51.92 -0.42 1.44 15 22 H 0.07 1.38 8.14 -51.93 -0.42 0.95 15 23 H 0.09 1.90 6.64 -51.93 -0.34 1.56 15 24 H 0.17 1.43 8.06 -52.49 -0.42 1.01 15 25 H 0.18 1.30 8.06 -52.49 -0.42 0.88 15 26 H 0.06 1.43 7.85 -51.93 -0.41 1.02 15 27 H 0.08 1.83 8.14 -51.93 -0.42 1.41 15 LS Contribution 246.47 15.07 3.71 3.71 Total: -1.00 -29.20 246.47 -6.62 -35.82 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -2.41 Total: -1.71 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.29 Total: -1.89 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.65 Total: -49.73 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.20 -6.62 -35.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858624649.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.515 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds