Wall clock time and date at job start Mon Mar 30 2020 02:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46972 * 2 1 4 4 C 1.50702 * 109.47422 * 240.00021 * 2 1 3 5 5 N 1.28801 * 124.99114 * 119.71687 * 4 2 1 6 6 C 1.33650 * 116.05636 * 179.79008 * 5 4 2 7 7 C 1.41154 * 122.86134 * 180.27716 * 6 5 4 8 8 H 1.08004 * 119.99968 * 174.32796 * 7 6 5 9 9 C 1.39720 * 119.99996 * 354.33059 * 7 6 5 10 10 N 1.31023 * 119.99736 * 6.19389 * 9 7 6 11 11 Si 1.86795 * 119.99968 * 186.19248 * 9 7 6 12 12 H 1.48502 * 109.47027 * 94.98469 * 11 9 7 13 13 H 1.48503 * 109.47263 * 214.98004 * 11 9 7 14 14 H 1.48501 * 109.47482 * 334.98332 * 11 9 7 15 15 C 1.37701 * 114.27500 * 0.49782 * 6 5 4 16 16 S 1.70995 * 108.84023 * 359.74226 * 15 6 5 17 17 C 1.52999 * 109.47088 * 119.99973 * 2 1 3 18 18 C 1.53008 * 117.51512 * 231.28590 * 17 2 1 19 19 C 1.53004 * 59.99956 * 107.48146 * 18 17 2 20 20 H 1.08991 * 109.46853 * 300.00155 * 1 2 3 21 21 H 1.09004 * 109.46518 * 60.00126 * 1 2 3 22 22 H 1.08998 * 109.46400 * 179.97438 * 1 2 3 23 23 H 0.97004 * 119.99369 * 179.97438 * 10 9 7 24 24 H 1.07998 * 125.57819 * 179.73839 * 15 6 5 25 25 H 1.08992 * 115.55060 * 85.58787 * 17 2 1 26 26 H 1.09000 * 117.49131 * 214.96941 * 18 17 2 27 27 H 1.08993 * 117.49962 * 359.97438 * 18 17 2 28 28 H 1.09000 * 117.49659 * 252.51419 * 19 18 17 29 29 H 1.09001 * 117.50142 * 107.48413 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2305 5 7 2.7719 -0.1777 -2.1407 6 6 3.1186 -0.9746 -3.1561 7 6 3.9292 -0.5414 -4.2274 8 1 4.2570 -1.2473 -4.9763 9 6 4.3076 0.8004 -4.3189 10 7 4.0136 1.6316 -3.3497 11 14 5.2328 1.4094 -5.8231 12 1 4.2701 1.9817 -6.7982 13 1 6.2057 2.4550 -5.4162 14 1 5.9581 0.2757 -6.4507 15 6 2.6137 -2.2529 -3.0704 16 16 1.6890 -2.3865 -1.6384 17 6 2.0400 -0.7212 1.2492 18 6 3.0758 0.0040 2.1108 19 6 1.6374 -0.1483 2.6096 20 1 -0.3633 0.5138 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3632 -1.0277 -0.0005 23 1 4.2766 2.5631 -3.4131 24 1 2.7753 -3.0418 -3.7901 25 1 2.1254 -1.8045 1.1647 26 1 3.8425 -0.6024 2.5931 27 1 3.3944 0.9949 1.7875 28 1 1.0095 0.7427 2.6145 29 1 1.4578 -0.8548 3.4200 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067929.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:00 Heat of formation + Delta-G solvation = 47.498146 kcal Electronic energy + Delta-G solvation = -12905.003235 eV Core-core repulsion = 10727.036436 eV Total energy + Delta-G solvation = -2177.966799 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.24108 -37.08643 -33.32270 -31.98024 -28.67420 -25.58032 -24.58047 -22.00904 -21.86241 -19.74350 -18.81508 -17.34393 -15.70987 -15.10982 -14.69519 -14.34569 -13.64777 -13.18766 -12.76622 -12.44520 -11.80651 -11.71836 -11.54529 -11.31519 -11.16900 -10.95021 -10.69738 -10.52161 -10.29902 -10.04595 -9.64269 -9.57656 -9.22343 -7.96083 -7.90060 -7.26587 -6.51086 -4.31766 2.35892 3.00168 3.07014 3.11520 3.15616 3.73608 4.03386 4.08719 4.33908 4.86677 5.14738 5.23032 5.41304 5.55267 5.74848 5.83440 5.84125 5.97486 6.12594 6.16434 6.36419 6.44703 6.53024 6.75656 6.90021 7.15024 7.29542 7.57238 8.23228 8.59138 8.92411 9.66269 10.36763 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.034158 B = 0.008668 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.533970 B = 3229.603034 C = 3690.365017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.023 3.977 3 H 0.092 0.908 4 C 0.072 3.928 5 N -0.399 5.399 6 C 0.226 3.774 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.072 3.928 10 N -0.752 5.752 11 Si 0.910 3.090 12 H -0.270 1.270 13 H -0.277 1.277 14 H -0.262 1.262 15 C -0.459 4.459 16 S -0.046 6.046 17 C -0.138 4.138 18 C -0.177 4.177 19 C -0.181 4.181 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.273 0.727 24 H 0.135 0.865 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 -0.283 7.545 8.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.000 4.000 3 H 0.110 0.890 4 C -0.212 4.212 5 N -0.112 5.112 6 C 0.104 3.896 7 C -0.468 4.468 8 H 0.101 0.899 9 C -0.150 4.150 10 N -0.375 5.375 11 Si 0.735 3.265 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.186 1.186 15 C -0.597 4.597 16 S 0.202 5.798 17 C -0.158 4.158 18 C -0.214 4.214 19 C -0.218 4.218 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.153 0.847 25 H 0.124 0.876 26 H 0.108 0.892 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.000 -0.279 8.041 8.986 hybrid contribution 1.091 0.434 -1.587 1.974 sum -2.909 0.155 6.454 7.081 Atomic orbital electron populations 1.21802 0.94076 1.02178 1.01543 1.19166 0.94974 0.98353 0.87477 0.88991 1.27660 1.01323 0.92447 0.99819 1.67382 1.09537 1.33220 1.01087 1.18021 0.93669 0.86317 0.91562 1.18962 1.26999 0.93955 1.06916 0.89876 1.25982 0.95001 0.96970 0.97014 1.70126 1.33905 1.04311 1.29167 0.86270 0.79546 0.79116 0.81573 1.19567 1.20216 1.18632 1.25071 1.23852 1.03481 1.07319 1.82521 1.56441 1.18023 1.22851 1.22346 1.03431 0.99417 0.90570 1.22984 0.92126 1.02342 1.03922 1.22930 0.98421 1.03157 0.97266 0.92342 0.92345 0.92307 0.91676 0.84691 0.87602 0.89198 0.88620 0.88887 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.95 37.16 0.33 -1.81 15 2 C 0.02 0.42 2.99 -91.77 -0.27 0.15 15 3 H 0.09 1.78 7.90 -51.93 -0.41 1.37 15 4 C 0.07 1.68 6.16 -13.55 -0.08 1.60 15 5 N -0.40 -11.05 8.49 -8.35 -0.07 -11.12 15 6 C 0.23 6.50 6.46 -86.16 -0.56 5.94 15 7 C -0.43 -12.30 9.23 -37.92 -0.35 -12.65 15 8 H 0.08 2.25 7.85 -52.48 -0.41 1.83 15 9 C 0.07 1.93 5.49 -17.34 -0.10 1.83 15 10 N -0.75 -20.64 11.72 55.54 0.65 -19.99 15 11 Si 0.91 19.49 29.56 -169.99 -5.03 14.46 15 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 13 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 14 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 15 C -0.46 -12.15 10.98 30.54 0.34 -11.81 15 16 S -0.05 -1.03 22.52 -107.50 -2.42 -3.45 15 17 C -0.14 -2.21 5.11 -90.61 -0.46 -2.67 15 18 C -0.18 -2.55 10.18 -26.73 -0.27 -2.82 15 19 C -0.18 -2.27 9.74 -26.73 -0.26 -2.53 15 20 H 0.06 0.74 7.29 -51.93 -0.38 0.36 15 21 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 22 H 0.06 0.90 7.98 -51.93 -0.41 0.48 15 23 H 0.27 6.79 8.30 -40.82 -0.34 6.46 15 24 H 0.14 3.43 8.06 -52.49 -0.42 3.01 15 25 H 0.11 1.76 7.75 -51.93 -0.40 1.35 15 26 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 27 H 0.10 1.43 8.05 -51.93 -0.42 1.01 15 28 H 0.09 1.08 7.61 -51.93 -0.40 0.68 15 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 LS Contribution 264.11 15.07 3.98 3.98 Total: -1.00 -30.03 264.11 -8.23 -38.25 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -3.66 Total: 2.65 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -1.69 Total: -24.78 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.58 Total: -31.11 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -2.42 Total: -3.45 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.03 -8.23 -38.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067929.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.753 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds