Wall clock time and date at job start Mon Mar 30 2020 02:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46972 * 2 1 4 4 C 1.50702 * 109.47422 * 240.00021 * 2 1 3 5 5 N 1.28801 * 124.99114 * 119.71687 * 4 2 1 6 6 C 1.33650 * 116.05636 * 179.79008 * 5 4 2 7 7 C 1.41154 * 122.86134 * 180.27716 * 6 5 4 8 8 H 1.08004 * 119.99968 * 174.32796 * 7 6 5 9 9 C 1.39720 * 119.99996 * 354.33059 * 7 6 5 10 10 N 1.31023 * 119.99736 * 6.19389 * 9 7 6 11 11 Si 1.86795 * 119.99968 * 186.19248 * 9 7 6 12 12 H 1.48502 * 109.47027 * 94.98469 * 11 9 7 13 13 H 1.48503 * 109.47263 * 214.98004 * 11 9 7 14 14 H 1.48501 * 109.47482 * 334.98332 * 11 9 7 15 15 C 1.37701 * 114.27500 * 0.49782 * 6 5 4 16 16 S 1.70995 * 108.84023 * 359.74226 * 15 6 5 17 17 C 1.52999 * 109.47088 * 119.99973 * 2 1 3 18 18 C 1.53008 * 117.51512 * 231.28590 * 17 2 1 19 19 C 1.53004 * 59.99956 * 107.48146 * 18 17 2 20 20 H 1.08991 * 109.46853 * 300.00155 * 1 2 3 21 21 H 1.09004 * 109.46518 * 60.00126 * 1 2 3 22 22 H 1.08998 * 109.46400 * 179.97438 * 1 2 3 23 23 H 0.97004 * 119.99369 * 179.97438 * 10 9 7 24 24 H 1.07998 * 125.57819 * 179.73839 * 15 6 5 25 25 H 1.08992 * 115.55060 * 85.58787 * 17 2 1 26 26 H 1.09000 * 117.49131 * 214.96941 * 18 17 2 27 27 H 1.08993 * 117.49962 * 359.97438 * 18 17 2 28 28 H 1.09000 * 117.49659 * 252.51419 * 19 18 17 29 29 H 1.09001 * 117.50142 * 107.48413 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2305 5 7 2.7719 -0.1777 -2.1407 6 6 3.1186 -0.9746 -3.1561 7 6 3.9292 -0.5414 -4.2274 8 1 4.2570 -1.2473 -4.9763 9 6 4.3076 0.8004 -4.3189 10 7 4.0136 1.6316 -3.3497 11 14 5.2328 1.4094 -5.8231 12 1 4.2701 1.9817 -6.7982 13 1 6.2057 2.4550 -5.4162 14 1 5.9581 0.2757 -6.4507 15 6 2.6137 -2.2529 -3.0704 16 16 1.6890 -2.3865 -1.6384 17 6 2.0400 -0.7212 1.2492 18 6 3.0758 0.0040 2.1108 19 6 1.6374 -0.1483 2.6096 20 1 -0.3633 0.5138 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3632 -1.0277 -0.0005 23 1 4.2766 2.5631 -3.4131 24 1 2.7753 -3.0418 -3.7901 25 1 2.1254 -1.8045 1.1647 26 1 3.8425 -0.6024 2.5931 27 1 3.3944 0.9949 1.7875 28 1 1.0095 0.7427 2.6145 29 1 1.4578 -0.8548 3.4200 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067929.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:00 Heat of formation + Delta-G solvation = 30.178153 kcal Electronic energy + Delta-G solvation = -12905.754286 eV Core-core repulsion = 10727.036436 eV Total energy + Delta-G solvation = -2178.717850 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.96619 -38.57098 -35.24628 -33.50221 -30.57155 -27.61963 -26.05674 -23.55546 -23.07426 -21.25588 -20.66232 -19.27838 -17.33698 -16.99645 -16.34138 -15.68124 -15.23734 -14.87468 -14.48120 -13.90368 -13.51656 -13.40475 -13.20720 -12.83948 -12.69222 -12.47270 -12.27820 -12.14777 -11.81018 -11.53317 -11.27118 -11.09066 -10.80964 -9.90164 -9.85563 -9.23975 -8.48819 -6.41374 0.42559 1.13422 1.35372 1.38859 1.50683 1.76768 2.21779 2.35530 2.95993 3.40770 3.46249 3.89713 4.08008 4.21634 4.38448 4.53453 4.63056 4.80623 4.87931 5.02655 5.06718 5.08722 5.14522 5.28890 5.33347 5.34498 5.43735 5.53097 6.14352 6.53067 6.85847 7.68871 8.41013 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.034158 B = 0.008668 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.533970 B = 3229.603034 C = 3690.365017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.023 3.977 3 H 0.078 0.922 4 C 0.076 3.924 5 N -0.448 5.448 6 C 0.196 3.804 7 C -0.475 4.475 8 H 0.081 0.919 9 C 0.028 3.972 10 N -0.784 5.784 11 Si 0.992 3.008 12 H -0.262 1.262 13 H -0.264 1.264 14 H -0.258 1.258 15 C -0.496 4.496 16 S 0.017 5.983 17 C -0.162 4.162 18 C -0.188 4.188 19 C -0.142 4.142 20 H 0.095 0.905 21 H 0.043 0.957 22 H 0.063 0.937 23 H 0.281 0.719 24 H 0.134 0.866 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.290 0.140 8.781 9.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.000 4.000 3 H 0.096 0.904 4 C -0.208 4.208 5 N -0.162 5.162 6 C 0.074 3.926 7 C -0.509 4.509 8 H 0.099 0.901 9 C -0.191 4.191 10 N -0.407 5.407 11 Si 0.812 3.188 12 H -0.187 1.187 13 H -0.188 1.188 14 H -0.182 1.182 15 C -0.634 4.634 16 S 0.265 5.735 17 C -0.182 4.182 18 C -0.225 4.225 19 C -0.179 4.179 20 H 0.113 0.887 21 H 0.063 0.937 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.152 0.848 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.103 0.897 28 H 0.127 0.873 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.634 0.116 9.298 10.389 hybrid contribution 1.226 0.251 -1.867 2.248 sum -3.409 0.367 7.431 8.183 Atomic orbital electron populations 1.21792 0.91611 1.02841 1.02707 1.19359 0.96868 0.97257 0.86505 0.90368 1.28658 0.98948 0.93160 0.99995 1.67411 1.12195 1.34348 1.02208 1.18468 0.94342 0.87379 0.92433 1.19323 1.28560 0.95404 1.07610 0.90109 1.26929 0.95512 0.96338 1.00355 1.70212 1.34498 1.04891 1.31119 0.85062 0.78168 0.78607 0.77003 1.18715 1.18808 1.18199 1.25351 1.25283 1.03196 1.09602 1.82043 1.54712 1.16768 1.19972 1.22217 1.06036 0.98809 0.91112 1.23061 0.93679 1.01744 1.04060 1.23061 0.96453 1.03395 0.94978 0.88675 0.93736 0.91815 0.90892 0.84822 0.88312 0.88316 0.89687 0.87320 0.86620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 8.95 71.98 0.64 -3.16 15 2 C 0.02 0.82 2.99 -11.54 -0.03 0.79 15 3 H 0.08 3.03 7.90 -2.38 -0.02 3.01 15 4 C 0.08 3.60 6.16 88.55 0.55 4.15 15 5 N -0.45 -25.52 8.49 -180.34 -1.53 -27.05 15 6 C 0.20 11.68 6.46 39.46 0.25 11.93 15 7 C -0.47 -27.93 9.23 23.34 0.22 -27.71 15 8 H 0.08 4.56 7.85 -2.91 -0.02 4.53 15 9 C 0.03 1.51 5.49 85.17 0.47 1.97 15 10 N -0.78 -43.98 11.72 21.79 0.26 -43.73 15 11 Si 0.99 40.36 29.56 68.60 2.03 42.39 15 12 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 13 H -0.26 -10.07 7.11 99.48 0.71 -9.37 15 14 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 15 C -0.50 -27.06 10.98 67.69 0.74 -26.31 15 16 S 0.02 0.74 22.52 -56.49 -1.27 -0.53 15 17 C -0.16 -4.87 5.11 -10.79 -0.06 -4.92 15 18 C -0.19 -5.10 10.18 30.60 0.31 -4.79 15 19 C -0.14 -3.02 9.74 30.60 0.30 -2.72 15 20 H 0.09 2.06 7.29 -2.39 -0.02 2.04 15 21 H 0.04 1.40 8.14 -2.38 -0.02 1.38 15 22 H 0.06 1.78 7.98 -2.39 -0.02 1.76 15 23 H 0.28 14.17 8.30 -92.71 -0.77 13.40 15 24 H 0.13 7.06 8.06 -2.91 -0.02 7.04 15 25 H 0.10 3.10 7.75 -2.39 -0.02 3.08 15 26 H 0.10 2.46 8.14 -2.39 -0.02 2.44 15 27 H 0.08 2.47 8.05 -2.39 -0.02 2.45 15 28 H 0.11 2.01 7.61 -2.39 -0.02 1.99 15 29 H 0.12 1.95 8.14 -2.39 -0.02 1.93 15 Total: -1.00 -67.09 264.11 4.01 -63.08 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.14 Total: 16.63 kcal Atomic # 6 Polarization: -54.18 SS G_CDS: 3.39 Total: -50.79 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -1.27 Total: -70.78 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -1.27 Total: -0.53 kcal Total: -67.09 4.01 -63.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067929.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.258 kcal (2) G-P(sol) polarization free energy of solvation -67.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds