Wall clock time and date at job start Mon Mar 30 2020 02:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86796 * 119.99682 * 2 1 4 4 H 1.48499 * 109.47414 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47407 * 119.99817 * 3 2 1 6 6 H 1.48503 * 109.47243 * 239.99503 * 3 2 1 7 7 C 1.38949 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00274 * 198.00793 * 7 2 1 9 9 N 1.37102 * 119.99600 * 18.00986 * 7 2 1 10 10 C 1.34769 * 120.00620 * 44.47422 * 9 7 2 11 11 O 1.21298 * 119.99569 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00250 * 179.97438 * 10 9 7 13 13 C 1.53841 * 113.65929 * 277.21236 * 12 10 9 14 14 C 1.51579 * 86.75690 * 220.73013 * 13 12 10 15 15 O 1.20755 * 135.78080 * 205.13550 * 14 13 12 16 16 C 1.51580 * 88.43360 * 25.15601 * 14 13 12 17 17 C 1.46505 * 119.99550 * 224.47699 * 9 7 2 18 18 C 1.53002 * 117.50113 * 3.27200 * 17 9 7 19 19 C 1.53006 * 117.49500 * 294.61727 * 17 9 7 20 20 H 0.96996 * 120.00004 * 354.96038 * 1 2 3 21 21 H 1.08995 * 112.88158 * 48.67069 * 12 10 9 22 22 H 1.09001 * 113.66702 * 335.19760 * 13 12 10 23 23 H 1.08999 * 113.66353 * 106.26324 * 13 12 10 24 24 H 1.09008 * 113.66550 * 220.37521 * 16 14 13 25 25 H 1.09000 * 113.67084 * 89.31630 * 16 14 13 26 26 H 1.08999 * 115.54910 * 148.94809 * 17 9 7 27 27 H 1.09005 * 117.49938 * 0.02562 * 18 17 9 28 28 H 1.08998 * 117.49842 * 145.01657 * 18 17 9 29 29 H 1.09003 * 117.49774 * 214.98092 * 19 17 9 30 30 H 1.08997 * 117.50034 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1018 1.6966 1.2125 6 1 3.1019 1.6964 -1.2124 7 6 2.0090 -1.2033 0.0005 8 1 3.0492 -1.2261 0.2897 9 7 1.3738 -2.3617 -0.3661 10 6 0.5770 -2.3785 -1.4528 11 8 0.4214 -1.3686 -2.1064 12 6 -0.1206 -3.6520 -1.8560 13 6 0.7617 -4.6047 -2.6810 14 6 -0.4652 -4.8654 -3.5321 15 8 -0.8542 -5.7655 -4.2369 16 6 -0.9918 -3.5064 -3.1156 17 6 1.5614 -3.5813 0.4237 18 6 2.4160 -3.4794 1.6887 19 6 2.9620 -4.1965 0.4515 20 1 -0.4850 0.8368 0.0738 21 1 -0.6318 -4.1368 -1.0244 22 1 1.5669 -4.1018 -3.2165 23 1 1.1018 -5.4780 -2.1245 24 1 -2.0620 -3.4965 -2.9087 25 1 -0.6786 -2.6954 -3.7730 26 1 0.7115 -4.2635 0.4441 27 1 2.8384 -2.5049 1.9336 28 1 2.1285 -4.0948 2.5412 29 1 3.0336 -5.2835 0.4905 30 1 3.7438 -3.6941 -0.1181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142370610.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:13 Heat of formation + Delta-G solvation = -4.402592 kcal Electronic energy + Delta-G solvation = -15519.089491 eV Core-core repulsion = 12896.119236 eV Total energy + Delta-G solvation = -2622.970255 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.94774 -38.29448 -36.39092 -35.13345 -32.77484 -30.90510 -26.15628 -25.70057 -23.57981 -21.73506 -21.16727 -19.43186 -18.41495 -16.99903 -16.12004 -15.58697 -15.06471 -14.78120 -14.58576 -13.91976 -13.70508 -13.50780 -12.60957 -12.27488 -12.19621 -11.69795 -11.25441 -10.98070 -10.90897 -10.82781 -10.70493 -10.51080 -10.21755 -9.99042 -9.76413 -9.16003 -8.74208 -8.08268 -7.07908 -6.15731 -3.92016 2.09132 3.27453 3.34897 3.37786 3.95129 4.19718 4.23930 4.63466 4.76444 4.93028 5.13714 5.23627 5.37890 5.55541 5.60935 5.73067 5.83082 5.89002 5.90601 6.03413 6.19149 6.20317 6.43166 6.50257 6.71113 6.89888 7.57620 7.70167 8.22821 9.01598 9.09818 9.60958 10.23144 10.93286 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.029003 B = 0.010395 C = 0.008246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.181804 B = 2693.056101 C = 3394.877904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.351 4.351 8 H 0.077 0.923 9 N -0.423 5.423 10 C 0.496 3.504 11 O -0.530 6.530 12 C -0.119 4.119 13 C -0.172 4.172 14 C 0.358 3.642 15 O -0.443 6.443 16 C -0.166 4.166 17 C 0.076 3.924 18 C -0.175 4.175 19 C -0.206 4.206 20 H 0.265 0.735 21 H 0.102 0.898 22 H 0.119 0.881 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.129 0.871 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 -7.300 0.274 7.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.477 4.477 8 H 0.095 0.905 9 N -0.143 5.143 10 C 0.283 3.717 11 O -0.408 6.408 12 C -0.141 4.141 13 C -0.210 4.210 14 C 0.234 3.766 15 O -0.316 6.316 16 C -0.204 4.204 17 C -0.030 4.030 18 C -0.213 4.213 19 C -0.246 4.246 20 H 0.075 0.925 21 H 0.120 0.880 22 H 0.137 0.863 23 H 0.110 0.890 24 H 0.107 0.893 25 H 0.147 0.853 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.309 -7.101 -0.508 7.239 hybrid contribution 0.358 0.819 0.412 0.984 sum 1.667 -6.282 -0.096 6.500 Atomic orbital electron populations 1.69809 1.06547 1.27611 1.42657 1.25250 0.94844 0.99414 0.94203 0.86259 0.79288 0.81874 0.78500 1.21175 1.20360 1.19932 1.18818 0.94440 0.83767 1.50724 0.90491 1.42719 1.43843 1.06853 1.20907 1.19271 0.83031 0.87882 0.81525 1.90529 1.62769 1.34256 1.53261 1.22324 0.97537 0.97429 0.96782 1.23927 0.98802 1.00215 0.98043 1.25950 0.89057 0.87315 0.74282 1.90364 1.70425 1.39410 1.31370 1.23888 1.01556 0.97337 0.97650 1.21702 0.92553 0.91591 0.97197 1.23082 1.04552 1.02491 0.91133 1.23319 0.99718 0.98451 1.03066 0.92472 0.87975 0.86346 0.88990 0.89295 0.85331 0.88053 0.87485 0.89823 0.89811 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.03 11.74 55.50 0.65 -23.38 16 2 C 0.07 2.02 4.39 -17.47 -0.08 1.94 16 3 Si 0.91 21.43 29.59 -169.99 -5.03 16.40 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.35 -9.23 7.91 -14.93 -0.12 -9.35 16 8 H 0.08 1.96 7.27 -52.49 -0.38 1.58 16 9 N -0.42 -10.03 2.83 -107.72 -0.31 -10.34 16 10 C 0.50 11.76 6.49 -10.99 -0.07 11.69 16 11 O -0.53 -14.77 13.67 5.54 0.08 -14.70 16 12 C -0.12 -2.11 3.03 -90.99 -0.28 -2.38 16 13 C -0.17 -2.55 7.59 -27.01 -0.20 -2.75 16 14 C 0.36 5.61 9.14 -28.26 -0.26 5.36 16 15 O -0.44 -7.89 17.99 6.00 0.11 -7.79 16 16 C -0.17 -2.74 7.38 -27.02 -0.20 -2.94 16 17 C 0.08 1.43 5.88 -67.92 -0.40 1.03 16 18 C -0.17 -3.01 9.80 -26.69 -0.26 -3.28 16 19 C -0.21 -3.31 10.36 -26.69 -0.28 -3.58 16 20 H 0.27 7.37 8.32 -40.82 -0.34 7.03 16 21 H 0.10 1.66 7.10 -51.93 -0.37 1.29 16 22 H 0.12 1.78 8.09 -51.93 -0.42 1.36 16 23 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 24 H 0.09 1.35 8.14 -51.92 -0.42 0.93 16 25 H 0.13 2.27 7.42 -51.93 -0.39 1.88 16 26 H 0.10 1.70 6.71 -51.93 -0.35 1.35 16 27 H 0.11 2.06 6.73 -51.93 -0.35 1.71 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 261.48 15.07 3.94 3.94 Total: -1.00 -31.65 261.48 -6.20 -37.85 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -3.50 Total: 2.28 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.14 Total: -4.27 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.35 Total: -33.72 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: 0.18 Total: -22.48 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.65 -6.20 -37.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142370610.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.450 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds