Wall clock time and date at job start Mon Mar 30 2020 03:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35683 * 116.99801 * 2 1 4 4 N 1.32280 * 119.68217 * 359.97080 * 3 2 1 5 5 C 1.31936 * 121.64124 * 179.75231 * 4 3 2 6 6 C 1.38082 * 120.83674 * 0.54326 * 5 4 3 7 7 C 1.50707 * 120.35843 * 179.75253 * 6 5 4 8 8 H 1.08999 * 109.47345 * 204.72065 * 7 6 5 9 9 O 1.42903 * 109.46442 * 324.71995 * 7 6 5 10 10 C 1.50696 * 109.47163 * 84.71614 * 7 6 5 11 11 H 1.07991 * 120.00427 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99614 * 180.02562 * 10 7 6 13 13 N 1.31510 * 120.00261 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 119.99746 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47404 * 90.00100 * 14 12 10 16 16 H 1.48506 * 109.47412 * 210.00385 * 14 12 10 17 17 H 1.48504 * 109.47304 * 330.00008 * 14 12 10 18 18 C 1.38785 * 119.28871 * 359.47228 * 6 5 4 19 19 C 1.38422 * 118.48589 * 0.25696 * 18 6 5 20 20 C 1.50697 * 120.44485 * 179.97438 * 19 18 6 21 21 H 1.08997 * 109.46830 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47263 * 300.00169 * 1 2 3 23 23 H 1.09005 * 109.47227 * 60.00351 * 1 2 3 24 24 H 1.08009 * 119.57817 * 180.26889 * 5 4 3 25 25 H 0.96700 * 114.00311 * 60.00230 * 9 7 6 26 26 H 0.97001 * 120.00070 * 180.02562 * 13 12 10 27 27 H 1.08001 * 120.75827 * 180.23108 * 18 6 5 28 28 H 1.09005 * 109.47159 * 89.99909 * 20 19 18 29 29 H 1.09001 * 109.47243 * 209.99555 * 20 19 18 30 30 H 1.08995 * 109.47158 * 330.00148 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.3183 2.3143 -0.0006 5 6 1.8767 3.5097 0.0042 6 6 3.2504 3.6492 -0.0011 7 6 3.8768 5.0199 -0.0011 8 1 4.8751 4.9633 -0.4351 9 8 3.0712 5.9116 -0.7744 10 6 3.9724 5.5286 1.4142 11 1 3.6157 4.9201 2.2319 12 6 4.5153 6.7709 1.6650 13 7 4.9492 7.5122 0.6691 14 14 4.6344 7.4012 3.4194 15 1 5.9348 6.9892 4.0062 16 1 4.5380 8.8831 3.4208 17 1 3.5249 6.8324 4.2262 18 6 4.0482 2.5136 -0.0006 19 6 3.4322 1.2740 -0.0001 20 6 4.2558 0.0120 -0.0001 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 1.2513 4.3903 0.0080 25 1 2.1674 6.0109 -0.4452 26 1 5.3314 8.3861 0.8457 27 1 5.1252 2.5951 -0.0009 28 1 4.4547 -0.2920 1.0277 29 1 3.7089 -0.7788 -0.5135 30 1 5.1995 0.1940 -0.5142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535685595.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:34 Heat of formation + Delta-G solvation = -61.158549 kcal Electronic energy + Delta-G solvation = -15026.359215 eV Core-core repulsion = 12400.927837 eV Total energy + Delta-G solvation = -2625.431378 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.23865 -37.74005 -35.54177 -33.25368 -32.22749 -30.95221 -27.51704 -26.80516 -26.25792 -23.23490 -22.37918 -20.25072 -17.95350 -17.12427 -16.62778 -15.72198 -15.32506 -14.68803 -14.06329 -13.79886 -13.51288 -13.33692 -12.66893 -12.63569 -12.34660 -12.27380 -11.85255 -11.51101 -11.28786 -11.12510 -10.95848 -10.71988 -10.23024 -9.63730 -9.14643 -8.92599 -8.66366 -8.37713 -7.63645 -6.09414 -4.29481 1.67104 1.90083 3.23752 3.31191 3.34477 3.43878 4.25345 4.39916 4.80458 5.14982 5.27871 5.34291 5.42951 5.46011 5.63517 5.67626 5.80308 5.86721 6.01496 6.07541 6.24046 6.37442 6.63664 6.82418 6.99768 7.58752 7.64322 7.74875 8.02663 8.36368 8.73158 9.22819 9.46800 10.93621 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.038584 B = 0.007153 C = 0.007038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.507009 B = 3913.585296 C = 3977.222358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.314 6.314 3 C 0.286 3.714 4 N -0.538 5.538 5 C 0.127 3.873 6 C -0.145 4.145 7 C 0.267 3.733 8 H 0.069 0.931 9 O -0.559 6.559 10 C -0.567 4.567 11 H 0.057 0.943 12 C 0.081 3.919 13 N -0.857 5.857 14 Si 0.893 3.107 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.049 4.049 19 C -0.157 4.157 20 C -0.095 4.095 21 H 0.088 0.912 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.154 0.846 25 H 0.346 0.654 26 H 0.263 0.737 27 H 0.137 0.863 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 -11.401 -0.883 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.222 6.222 3 C 0.108 3.892 4 N -0.260 5.260 5 C -0.028 4.028 6 C -0.147 4.147 7 C 0.209 3.791 8 H 0.087 0.913 9 O -0.362 6.362 10 C -0.604 4.604 11 H 0.076 0.924 12 C -0.126 4.126 13 N -0.493 5.493 14 Si 0.720 3.280 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.074 4.074 19 C -0.160 4.160 20 C -0.152 4.152 21 H 0.106 0.894 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.172 0.828 25 H 0.191 0.809 26 H 0.073 0.927 27 H 0.155 0.845 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.668 -11.518 -1.305 12.497 hybrid contribution 0.214 0.572 1.420 1.546 sum -4.454 -10.946 0.114 11.818 Atomic orbital electron populations 1.22718 0.78282 1.02005 1.02196 1.86157 1.22007 1.25139 1.88913 1.19473 0.88796 0.84532 0.96432 1.67211 1.40871 0.98874 1.19014 1.22060 0.92954 0.92802 0.94974 1.22246 0.94823 0.99835 0.97798 1.18384 0.90064 0.78947 0.91692 0.91300 1.86629 1.25346 1.68073 1.56166 1.21524 1.44000 1.02707 0.92189 0.92434 1.25042 0.93958 0.96571 0.97021 1.70066 1.37901 1.10692 1.30615 0.86608 0.78658 0.78063 0.84717 1.20430 1.20982 1.19751 1.21207 1.00525 0.90163 0.95531 1.19823 0.91135 0.96797 1.08224 1.20508 0.98553 0.94180 1.02004 0.89363 0.92709 0.92733 0.82843 0.80920 0.92741 0.84511 0.91655 0.91492 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 101.05 1.05 1.60 16 2 O -0.31 -5.03 9.54 -18.75 -0.18 -5.21 16 3 C 0.29 5.23 7.47 -17.12 -0.13 5.10 16 4 N -0.54 -10.31 9.22 -13.33 -0.12 -10.43 16 5 C 0.13 2.52 10.49 -17.56 -0.18 2.34 16 6 C -0.14 -3.06 4.95 -104.47 -0.52 -3.58 16 7 C 0.27 6.58 3.08 -29.03 -0.09 6.50 16 8 H 0.07 1.83 8.06 -51.93 -0.42 1.41 16 9 O -0.56 -13.91 12.53 -35.23 -0.44 -14.36 16 10 C -0.57 -15.09 8.75 -34.44 -0.30 -15.39 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 13 N -0.86 -24.54 12.84 55.43 0.71 -23.83 16 14 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 C -0.05 -0.92 9.51 -39.31 -0.37 -1.30 16 19 C -0.16 -2.75 5.91 -104.32 -0.62 -3.36 16 20 C -0.10 -1.30 9.81 36.00 0.35 -0.94 16 21 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 23 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 24 H 0.15 2.79 6.63 -52.48 -0.35 2.45 16 25 H 0.35 7.48 7.41 45.56 0.34 7.82 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.86 7.55 -51.93 -0.39 0.47 16 30 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 LS Contribution 265.08 15.07 3.99 3.99 Total: -1.00 -30.53 265.08 -4.85 -35.39 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -2.89 Total: 5.66 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.90 Total: -6.94 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.59 Total: -34.26 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.62 Total: -19.57 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.53 -4.85 -35.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535685595.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.773 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds