Wall clock time and date at job start Mon Mar 30 2020 03:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35682 * 116.99710 * 2 1 4 4 C 1.38916 * 119.68057 * 180.02562 * 3 2 1 5 5 C 1.38381 * 119.10718 * 179.97438 * 4 3 2 6 6 C 1.50706 * 120.75358 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46953 * 160.00292 * 6 5 4 8 8 O 1.42895 * 109.46938 * 40.00329 * 6 5 4 9 9 C 1.50698 * 109.47294 * 279.99734 * 6 5 4 10 10 H 1.08005 * 119.99819 * 0.02562 * 9 6 5 11 11 C 1.37875 * 120.00046 * 179.97438 * 9 6 5 12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 6 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 6 14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9 16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9 17 17 C 1.38832 * 118.48647 * 0.27344 * 5 4 3 18 18 C 1.38048 * 119.28690 * 359.45481 * 17 5 4 19 19 C 1.50694 * 119.57931 * 180.27818 * 18 17 5 20 20 N 1.31959 * 120.83281 * 0.55463 * 18 17 5 21 21 H 1.08996 * 109.47393 * 60.00220 * 1 2 3 22 22 H 1.09004 * 109.47073 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47122 * 300.00223 * 1 2 3 24 24 H 1.07994 * 120.45174 * 359.97438 * 4 3 2 25 25 H 0.96696 * 113.99976 * 299.98912 * 8 6 5 26 26 H 0.97001 * 119.99934 * 359.97438 * 12 11 9 27 27 H 1.07998 * 120.35438 * 179.70626 * 17 5 4 28 28 H 1.08999 * 109.47418 * 270.27702 * 19 18 17 29 29 H 1.09000 * 109.47586 * 30.27658 * 19 18 17 30 30 H 1.09004 * 109.47082 * 150.27515 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5132 -0.0011 6 6 5.5511 2.6270 -0.0011 7 1 5.8405 3.6173 -0.3530 8 8 6.1040 1.6335 -0.8667 9 6 6.0707 2.4196 1.3982 10 1 5.3816 2.2245 2.2067 11 6 7.4257 2.4779 1.6462 12 7 8.2648 2.7151 0.6617 13 14 8.0697 2.2202 3.3806 14 1 9.5505 2.3324 3.3806 15 1 7.6751 0.8711 3.8598 16 1 7.4955 3.2525 4.2805 17 6 3.2503 3.6492 0.0048 18 6 1.8769 3.5097 -0.0006 19 6 1.0044 4.7384 -0.0006 20 7 1.3185 2.3141 -0.0001 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 4.0229 0.3697 -0.0005 25 1 5.8867 0.7261 -0.6132 26 1 7.9304 2.8486 -0.2390 27 1 3.6991 4.6315 0.0093 28 1 0.7943 5.0349 1.0270 29 1 1.5194 5.5498 -0.5148 30 1 0.0682 4.5191 -0.5141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535732016.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:47 Heat of formation + Delta-G solvation = -91.653215 kcal Electronic energy + Delta-G solvation = -15060.260739 eV Core-core repulsion = 12433.507013 eV Total energy + Delta-G solvation = -2626.753726 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.72536 -39.28690 -38.02106 -34.41139 -33.85338 -32.80933 -29.45808 -28.38192 -27.50979 -25.22956 -23.81599 -22.00131 -19.49729 -19.10802 -18.03201 -17.34094 -17.02887 -16.50694 -15.72671 -15.56755 -15.08228 -14.95778 -14.68977 -14.33274 -14.26634 -13.32028 -13.23482 -12.98401 -12.66392 -12.62151 -12.35181 -12.04155 -11.93644 -11.76442 -10.93506 -10.72273 -10.55842 -10.12102 -9.41582 -8.67767 -6.54863 0.14377 0.27880 1.52828 1.59202 1.79865 2.08735 2.51574 2.73000 3.09934 3.22650 3.72905 3.90675 4.09298 4.16272 4.28055 4.41723 4.45177 4.53967 4.66775 4.72696 4.77928 4.94434 5.00387 5.12065 5.48522 5.54517 5.72620 6.03196 6.23614 6.48338 6.81610 6.98020 7.38644 8.69534 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.007843 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.812511 B = 3569.291904 C = 3812.428065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.321 6.321 3 C 0.314 3.686 4 C -0.207 4.207 5 C -0.009 4.009 6 C 0.245 3.755 7 H 0.046 0.954 8 O -0.585 6.585 9 C -0.648 4.648 10 H 0.046 0.954 11 C -0.010 4.010 12 N -0.913 5.913 13 Si 1.115 2.885 14 H -0.281 1.281 15 H -0.271 1.271 16 H -0.270 1.270 17 C -0.220 4.220 18 C 0.160 3.840 19 C -0.094 4.094 20 N -0.553 5.553 21 H 0.058 0.942 22 H 0.125 0.875 23 H 0.056 0.944 24 H 0.133 0.867 25 H 0.366 0.634 26 H 0.270 0.730 27 H 0.142 0.858 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.742 -0.278 0.083 14.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.229 6.229 3 C 0.136 3.864 4 C -0.228 4.228 5 C -0.016 4.016 6 C 0.188 3.812 7 H 0.064 0.936 8 O -0.391 6.391 9 C -0.686 4.686 10 H 0.064 0.936 11 C -0.213 4.213 12 N -0.548 5.548 13 Si 0.936 3.064 14 H -0.206 1.206 15 H -0.196 1.196 16 H -0.195 1.195 17 C -0.240 4.240 18 C 0.024 3.976 19 C -0.151 4.151 20 N -0.279 5.279 21 H 0.077 0.923 22 H 0.143 0.857 23 H 0.074 0.926 24 H 0.150 0.850 25 H 0.214 0.786 26 H 0.080 0.920 27 H 0.160 0.840 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.955 -0.148 0.643 13.971 hybrid contribution -0.661 -0.341 -0.796 1.090 sum -14.617 -0.489 -0.153 14.625 Atomic orbital electron populations 1.23074 0.75679 1.04685 1.02276 1.86222 1.24632 1.24040 1.87994 1.19753 0.88989 0.85206 0.92489 1.20737 0.92253 0.99081 1.10712 1.21182 0.98159 0.92977 0.89293 1.18491 0.84098 0.88682 0.89965 0.93648 1.86465 1.78198 1.18375 1.56091 1.22538 0.95204 1.56857 0.93965 0.93608 1.27287 0.93792 0.91773 1.08405 1.70783 1.38319 1.43204 1.02488 0.82977 0.75792 0.77757 0.69898 1.20610 1.19639 1.19513 1.21850 0.94394 0.99524 1.08212 1.21473 0.91786 0.92903 0.91457 1.20796 0.98699 0.91314 1.04316 1.67151 1.40472 0.98411 1.21865 0.92350 0.85702 0.92558 0.84957 0.78629 0.91984 0.84031 0.88969 0.88757 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.86 10.38 113.37 1.18 2.04 16 2 O -0.32 -10.60 10.48 -90.00 -0.94 -11.55 16 3 C 0.31 11.81 7.49 84.79 0.63 12.44 16 4 C -0.21 -8.61 9.34 22.47 0.21 -8.40 16 5 C -0.01 -0.38 4.93 -19.69 -0.10 -0.47 16 6 C 0.24 12.58 2.70 29.10 0.08 12.66 16 7 H 0.05 2.49 7.91 -2.39 -0.02 2.47 16 8 O -0.58 -30.06 11.87 -148.98 -1.77 -31.83 16 9 C -0.65 -36.01 8.74 25.60 0.22 -35.78 16 10 H 0.05 2.56 7.74 -2.91 -0.02 2.53 16 11 C -0.01 -0.54 5.40 84.65 0.46 -0.08 16 12 N -0.91 -55.32 13.53 21.45 0.29 -55.03 16 13 Si 1.11 49.22 29.90 68.60 2.05 51.28 16 14 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 C -0.22 -8.37 9.41 22.37 0.21 -8.16 16 18 C 0.16 5.26 6.78 42.49 0.29 5.54 16 19 C -0.09 -2.07 10.17 71.23 0.72 -1.34 16 20 N -0.55 -19.30 9.13 -297.00 -2.71 -22.01 16 21 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 22 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 24 H 0.13 5.37 6.89 -2.91 -0.02 5.35 16 25 H 0.37 16.91 7.59 -74.06 -0.56 16.35 16 26 H 0.27 16.79 6.47 -92.71 -0.60 16.19 16 27 H 0.14 4.95 8.06 -2.91 -0.02 4.93 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 29 H 0.09 1.73 8.08 -2.39 -0.02 1.71 16 30 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -67.37 264.94 1.58 -65.79 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.76 Total: 24.90 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 3.91 Total: -21.56 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -2.42 Total: -77.04 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -2.71 Total: -43.37 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.05 Total: 51.28 kcal Total: -67.37 1.58 -65.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535732016.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.865 kcal (2) G-P(sol) polarization free energy of solvation -67.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds