Wall clock time and date at job start Mon Mar 30 2020 03:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35672 * 116.99830 * 2 1 4 4 C 1.38928 * 119.68315 * 180.24956 * 3 2 1 5 5 C 1.38373 * 119.10847 * 180.27235 * 4 3 2 6 6 C 1.50707 * 120.75769 * 179.75793 * 5 4 3 7 7 H 1.08999 * 109.47345 * 204.72350 * 6 5 4 8 8 O 1.42903 * 109.46442 * 324.72280 * 6 5 4 9 9 C 1.50696 * 109.47163 * 84.71899 * 6 5 4 10 10 H 1.07991 * 120.00427 * 0.02562 * 9 6 5 11 11 C 1.37879 * 119.99614 * 180.02562 * 9 6 5 12 12 N 1.31510 * 120.00261 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 119.99746 * 180.02562 * 11 9 6 14 14 H 1.48505 * 109.47282 * 60.00081 * 13 11 9 15 15 H 1.48504 * 109.47454 * 180.02562 * 13 11 9 16 16 H 1.48510 * 109.47446 * 300.00295 * 13 11 9 17 17 C 1.38827 * 118.49107 * 359.48480 * 5 4 3 18 18 C 1.38049 * 119.28418 * 0.27139 * 17 5 4 19 19 C 1.50707 * 119.58245 * 179.97438 * 18 17 5 20 20 N 1.31961 * 120.83846 * 359.97438 * 18 17 5 21 21 H 1.09003 * 109.47173 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47258 * 300.00142 * 1 2 3 23 23 H 1.09004 * 109.47108 * 60.00398 * 1 2 3 24 24 H 1.08004 * 120.44512 * 0.03205 * 4 3 2 25 25 H 0.96700 * 114.00311 * 60.00230 * 8 6 5 26 26 H 0.97001 * 120.00070 * 180.02562 * 12 11 9 27 27 H 1.07994 * 120.36022 * 180.25021 * 17 5 4 28 28 H 1.08998 * 109.46915 * 90.00169 * 19 18 17 29 29 H 1.08998 * 109.46949 * 210.00496 * 19 18 17 30 30 H 1.09003 * 109.46924 * 330.00157 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0053 5 6 4.0484 2.5131 0.0005 6 6 5.5512 2.6270 0.0006 7 1 5.8431 3.5831 0.4350 8 8 6.1094 1.5624 0.7734 9 6 6.0615 2.5414 -1.4147 10 1 5.3672 2.4174 -2.2325 11 6 7.4149 2.6214 -1.6655 12 7 8.2605 2.7718 -0.6696 13 14 8.0475 2.5160 -3.4199 14 1 7.4679 3.6230 -4.2225 15 1 9.5284 2.6268 -3.4198 16 1 7.6491 1.2138 -4.0125 17 6 3.2505 3.6491 0.0005 18 6 1.8771 3.5096 0.0004 19 6 1.0044 4.7384 0.0009 20 7 1.3186 2.3140 -0.0002 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 4.0229 0.3695 -0.0099 25 1 5.8901 0.6801 0.4439 26 1 9.2126 2.8285 -0.8460 27 1 3.6993 4.6314 0.0009 28 1 0.7941 5.0350 -1.0266 29 1 0.0685 4.5190 0.5147 30 1 1.5197 5.5497 0.5151 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535732017.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:49 Heat of formation + Delta-G solvation = -61.389130 kcal Electronic energy + Delta-G solvation = -15018.961109 eV Core-core repulsion = 12393.519732 eV Total energy + Delta-G solvation = -2625.441377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.18133 -37.75449 -35.88576 -32.32663 -32.10199 -31.30744 -28.13713 -26.84227 -26.22366 -23.42458 -22.29072 -20.13704 -17.53053 -17.09973 -16.35359 -15.67066 -15.53585 -14.70754 -14.32127 -14.06467 -13.75405 -13.32086 -12.78929 -12.61374 -12.22529 -12.10961 -11.74946 -11.39301 -11.16957 -11.14990 -10.93853 -10.66804 -10.29413 -9.65473 -9.22464 -8.88094 -8.60459 -8.29925 -7.90252 -6.11674 -4.31649 1.70070 1.94572 3.25116 3.30133 3.32805 3.45850 4.24322 4.38418 4.59901 5.13066 5.26790 5.39049 5.45854 5.62352 5.65075 5.76878 5.81864 5.84736 5.95143 6.01333 6.22162 6.34683 6.55976 6.86440 7.04279 7.57474 7.68376 7.73760 7.98061 8.35296 8.70151 9.20987 9.44192 10.92026 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.031568 B = 0.007777 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.774391 B = 3599.422807 C = 3839.520853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.312 6.312 3 C 0.312 3.688 4 C -0.190 4.190 5 C 0.007 3.993 6 C 0.260 3.740 7 H 0.075 0.925 8 O -0.558 6.558 9 C -0.567 4.567 10 H 0.058 0.942 11 C 0.082 3.918 12 N -0.857 5.857 13 Si 0.895 3.105 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.203 4.203 18 C 0.150 3.850 19 C -0.097 4.097 20 N -0.558 5.558 21 H 0.089 0.911 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.135 0.865 25 H 0.349 0.651 26 H 0.264 0.736 27 H 0.132 0.868 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.084 -0.349 0.816 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.220 6.220 3 C 0.134 3.866 4 C -0.211 4.211 5 C -0.001 4.001 6 C 0.202 3.798 7 H 0.093 0.907 8 O -0.361 6.361 9 C -0.605 4.605 10 H 0.077 0.923 11 C -0.125 4.125 12 N -0.492 5.492 13 Si 0.722 3.278 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.200 1.200 17 C -0.224 4.224 18 C 0.015 3.985 19 C -0.155 4.155 20 N -0.284 5.284 21 H 0.107 0.893 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.153 0.847 25 H 0.194 0.806 26 H 0.074 0.926 27 H 0.150 0.850 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.445 -0.156 1.238 12.507 hybrid contribution 0.768 -0.349 -1.409 1.642 sum -11.677 -0.505 -0.171 11.689 Atomic orbital electron populations 1.22718 0.78313 1.02113 1.02008 1.86225 1.22066 1.25180 1.88533 1.19713 0.89304 0.84146 0.93402 1.20769 0.91083 0.99706 1.09531 1.21746 1.00586 0.91166 0.86577 1.18571 0.80066 0.89037 0.92133 0.90720 1.86618 1.77308 1.16063 1.56107 1.21413 0.92380 1.54827 0.91855 0.92346 1.25030 0.96782 0.93546 0.97189 1.70055 1.02679 1.45714 1.30742 0.86627 0.77720 0.78921 0.84530 1.20012 1.21011 1.19978 1.21647 0.93279 0.99980 1.07493 1.20738 0.91973 0.91544 0.94268 1.20647 0.98861 0.93292 1.02669 1.66952 1.40904 0.98362 1.22139 0.89283 0.92778 0.92776 0.84681 0.80642 0.92607 0.84961 0.90776 0.91148 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 101.05 1.05 1.62 16 2 O -0.31 -5.40 10.48 -18.72 -0.20 -5.60 16 3 C 0.31 6.03 7.49 -17.12 -0.13 5.90 16 4 C -0.19 -3.91 9.34 -39.28 -0.37 -4.27 16 5 C 0.01 0.15 4.97 -104.35 -0.52 -0.37 16 6 C 0.26 6.51 3.10 -29.03 -0.09 6.42 16 7 H 0.08 2.00 8.07 -51.93 -0.42 1.58 16 8 O -0.56 -14.20 12.54 -35.23 -0.44 -14.64 16 9 C -0.57 -15.30 8.75 -34.44 -0.30 -15.60 16 10 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 11 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 12 N -0.86 -24.63 12.84 55.43 0.71 -23.92 16 13 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 17 C -0.20 -3.93 9.42 -39.43 -0.37 -4.30 16 18 C 0.15 2.63 6.78 -82.60 -0.56 2.07 16 19 C -0.10 -1.25 10.17 36.01 0.37 -0.88 16 20 N -0.56 -10.31 9.13 -9.55 -0.09 -10.39 16 21 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 23 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 24 H 0.14 2.64 6.74 -52.48 -0.35 2.28 16 25 H 0.35 7.86 7.48 45.56 0.34 8.20 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.13 2.35 8.06 -52.49 -0.42 1.92 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 LS Contribution 266.73 15.07 4.02 4.02 Total: -1.00 -30.78 266.73 -4.96 -35.74 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -2.92 Total: 6.23 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.02 Total: -7.28 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.62 Total: -34.31 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.64 Total: -20.24 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.78 -4.96 -35.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535732017.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.652 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds