Wall clock time and date at job start Mon Mar 30 2020 02:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47079 * 2 1 4 4 C 1.34997 * 116.99522 * 180.02562 * 3 2 1 5 5 O 1.21674 * 120.00507 * 359.97438 * 4 3 2 6 6 C 1.46192 * 119.99596 * 180.02562 * 4 3 2 7 7 N 1.37054 * 126.44943 * 359.68747 * 6 4 3 8 8 H 0.97001 * 125.38558 * 0.02562 * 7 6 4 9 9 C 1.36075 * 109.23118 * 179.82712 * 7 6 4 10 10 C 1.50701 * 125.15675 * 180.15244 * 9 7 6 11 11 C 1.34557 * 109.68377 * 0.44625 * 9 7 6 12 12 C 1.41065 * 126.44968 * 179.97438 * 6 4 3 13 13 C 1.40639 * 126.85947 * 0.02562 * 12 6 4 14 14 H 1.07998 * 120.00207 * 359.97438 * 13 12 6 15 15 C 1.40342 * 119.99786 * 180.02562 * 13 12 6 16 16 N 1.30611 * 119.99953 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99829 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47227 * 89.99444 * 17 15 13 19 19 H 1.48504 * 109.46863 * 209.99642 * 17 15 13 20 20 H 1.48497 * 109.46936 * 329.99427 * 17 15 13 21 21 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46930 * 299.99773 * 1 2 3 23 23 H 1.09004 * 109.47059 * 59.99375 * 1 2 3 24 24 H 1.09004 * 109.46930 * 240.00226 * 2 1 3 25 25 H 1.09000 * 109.47312 * 120.00170 * 2 1 3 26 26 H 1.09002 * 109.47539 * 270.33692 * 10 9 7 27 27 H 1.09007 * 109.46710 * 30.33940 * 10 9 7 28 28 H 1.09002 * 109.47096 * 150.33477 * 10 9 7 29 29 H 1.08003 * 126.15204 * 179.69280 * 11 9 7 30 30 H 0.97001 * 119.99608 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3447 1.5241 -0.0005 5 8 4.0859 0.5592 -0.0005 6 6 3.9035 2.8750 0.0000 7 7 3.1960 4.0488 -0.0050 8 1 2.2287 4.1217 -0.0092 9 6 4.0650 5.0959 0.0013 10 6 3.6710 6.5505 0.0019 11 6 5.3294 4.6356 0.0004 12 6 5.2724 3.2158 0.0000 13 6 6.3628 2.3276 -0.0009 14 1 6.1909 1.2614 -0.0014 15 6 7.6744 2.8269 -0.0002 16 7 7.8824 4.1163 0.0009 17 14 9.1228 1.6472 -0.0021 18 1 9.5065 1.3367 -1.4027 19 1 10.2724 2.2737 0.6988 20 1 8.7410 0.3934 0.6960 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.5754 6.9016 -1.0257 27 1 2.7173 6.6684 0.5163 28 1 4.4354 7.1338 0.5154 29 1 6.2264 5.2371 -0.0002 30 1 8.7889 4.4614 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037624458.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:16 Heat of formation + Delta-G solvation = -66.404820 kcal Electronic energy + Delta-G solvation = -15020.454580 eV Core-core repulsion = 12394.795707 eV Total energy + Delta-G solvation = -2625.658873 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.64292 -38.59652 -35.38576 -33.76886 -31.29552 -30.52901 -29.54867 -26.23827 -25.29533 -22.76852 -20.93541 -19.11148 -18.70647 -17.45029 -16.32040 -15.74278 -15.38190 -14.82954 -13.82738 -13.63112 -13.05377 -12.88651 -12.68776 -12.47175 -12.00600 -11.70181 -11.38702 -11.27053 -11.10543 -11.08539 -11.04773 -10.92062 -10.20737 -9.81137 -9.73164 -9.43247 -8.89976 -7.45054 -6.74204 -6.64745 -4.21548 2.59528 3.13283 3.16243 3.23229 3.79299 4.02142 4.19370 4.42384 4.66556 5.26960 5.36595 5.59691 5.60251 5.81226 5.86637 5.92744 6.08550 6.16261 6.18852 6.45202 6.63578 7.05298 7.24304 7.41723 7.60581 7.86331 8.18908 8.34134 8.82142 8.92534 9.06381 9.15179 9.32668 10.24407 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.022923 B = 0.009963 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.194721 B = 2809.681166 C = 4005.125063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.066 3.934 3 O -0.378 6.378 4 C 0.516 3.484 5 O -0.542 6.542 6 C -0.201 4.201 7 N -0.575 5.575 8 H 0.394 0.606 9 C 0.043 3.957 10 C -0.080 4.080 11 C -0.233 4.233 12 C 0.126 3.874 13 C -0.407 4.407 14 H 0.097 0.903 15 C 0.069 3.931 16 N -0.790 5.790 17 Si 0.920 3.080 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.259 1.259 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.162 0.838 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.153 0.672 0.003 7.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.009 4.009 3 O -0.298 6.298 4 C 0.372 3.628 5 O -0.436 6.436 6 C -0.303 4.303 7 N -0.178 5.178 8 H 0.227 0.773 9 C -0.071 4.071 10 C -0.138 4.138 11 C -0.262 4.262 12 C 0.118 3.882 13 C -0.437 4.437 14 H 0.115 0.885 15 C -0.149 4.149 16 N -0.417 5.417 17 Si 0.744 3.256 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.183 1.183 21 H 0.089 0.911 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.179 0.821 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.923 0.454 0.005 6.938 hybrid contribution 0.149 -0.610 -0.019 0.628 sum -6.774 -0.156 -0.014 6.776 Atomic orbital electron populations 1.21772 0.93905 1.02014 1.02827 1.22278 0.94131 0.82890 1.01568 1.86147 1.26750 1.30108 1.86832 1.19764 0.78517 0.88986 0.75539 1.90735 1.59424 1.41481 1.51973 1.18658 0.91072 0.81430 1.39162 1.40966 1.06420 1.04569 1.65881 0.77257 1.20312 0.91128 0.88612 1.07033 1.20269 1.00867 0.91244 1.01388 1.21563 0.94891 0.95119 1.14583 1.17514 0.88395 0.92475 0.89811 1.19603 0.88935 0.95915 1.39273 0.88495 1.26146 1.01004 0.95570 0.92179 1.69593 1.23093 1.13463 1.35572 0.86115 0.79156 0.81031 0.79293 1.19368 1.20250 1.18306 0.91123 0.92014 0.92021 0.92518 0.92514 0.92120 0.93065 0.90858 0.82107 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 37.16 0.38 -1.48 16 2 C 0.07 1.15 6.10 37.16 0.23 1.38 16 3 O -0.38 -8.11 10.13 -41.31 -0.42 -8.53 16 4 C 0.52 13.22 7.91 33.92 0.27 13.49 16 5 O -0.54 -15.10 14.68 -19.40 -0.28 -15.39 16 6 C -0.20 -5.29 7.18 -81.27 -0.58 -5.87 16 7 N -0.57 -12.86 6.06 -5.29 -0.03 -12.89 16 8 H 0.39 7.50 8.96 -40.82 -0.37 7.14 16 9 C 0.04 0.95 7.08 -82.01 -0.58 0.37 16 10 C -0.08 -1.29 10.40 36.01 0.37 -0.91 16 11 C -0.23 -6.00 9.56 -39.40 -0.38 -6.38 16 12 C 0.13 3.57 5.97 -106.44 -0.64 2.93 16 13 C -0.41 -11.69 8.98 -37.89 -0.34 -12.03 16 14 H 0.10 2.89 6.11 -52.49 -0.32 2.57 16 15 C 0.07 1.80 5.50 -17.28 -0.10 1.71 16 16 N -0.79 -20.27 10.34 55.57 0.57 -19.69 16 17 Si 0.92 19.78 29.56 -169.99 -5.03 14.75 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.99 8.13 -51.93 -0.42 0.56 16 25 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.16 4.20 5.82 -52.48 -0.31 3.90 16 30 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 LS Contribution 265.33 15.07 4.00 4.00 Total: -1.00 -31.10 265.33 -6.05 -37.15 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -3.51 Total: 7.39 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.36 Total: -6.79 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.54 Total: -32.58 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.70 Total: -23.91 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.10 -6.05 -37.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037624458.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.250 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds