Wall clock time and date at job start Mon Mar 30 2020 02:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47079 * 2 1 4 4 C 1.34997 * 116.99522 * 180.02562 * 3 2 1 5 5 O 1.21674 * 120.00507 * 359.97438 * 4 3 2 6 6 C 1.46192 * 119.99596 * 180.02562 * 4 3 2 7 7 N 1.37054 * 126.44943 * 359.68747 * 6 4 3 8 8 H 0.97001 * 125.38558 * 0.02562 * 7 6 4 9 9 C 1.36075 * 109.23118 * 179.82712 * 7 6 4 10 10 C 1.50701 * 125.15675 * 180.15244 * 9 7 6 11 11 C 1.34557 * 109.68377 * 0.44625 * 9 7 6 12 12 C 1.41065 * 126.44968 * 179.97438 * 6 4 3 13 13 C 1.40639 * 126.85947 * 0.02562 * 12 6 4 14 14 H 1.07998 * 120.00207 * 359.97438 * 13 12 6 15 15 C 1.40342 * 119.99786 * 180.02562 * 13 12 6 16 16 N 1.30611 * 119.99953 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99829 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47227 * 89.99444 * 17 15 13 19 19 H 1.48504 * 109.46863 * 209.99642 * 17 15 13 20 20 H 1.48497 * 109.46936 * 329.99427 * 17 15 13 21 21 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46930 * 299.99773 * 1 2 3 23 23 H 1.09004 * 109.47059 * 59.99375 * 1 2 3 24 24 H 1.09004 * 109.46930 * 240.00226 * 2 1 3 25 25 H 1.09000 * 109.47312 * 120.00170 * 2 1 3 26 26 H 1.09002 * 109.47539 * 270.33692 * 10 9 7 27 27 H 1.09007 * 109.46710 * 30.33940 * 10 9 7 28 28 H 1.09002 * 109.47096 * 150.33477 * 10 9 7 29 29 H 1.08003 * 126.15204 * 179.69280 * 11 9 7 30 30 H 0.97001 * 119.99608 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3447 1.5241 -0.0005 5 8 4.0859 0.5592 -0.0005 6 6 3.9035 2.8750 0.0000 7 7 3.1960 4.0488 -0.0050 8 1 2.2287 4.1217 -0.0092 9 6 4.0650 5.0959 0.0013 10 6 3.6710 6.5505 0.0019 11 6 5.3294 4.6356 0.0004 12 6 5.2724 3.2158 0.0000 13 6 6.3628 2.3276 -0.0009 14 1 6.1909 1.2614 -0.0014 15 6 7.6744 2.8269 -0.0002 16 7 7.8824 4.1163 0.0009 17 14 9.1228 1.6472 -0.0021 18 1 9.5065 1.3367 -1.4027 19 1 10.2724 2.2737 0.6988 20 1 8.7410 0.3934 0.6960 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.5754 6.9016 -1.0257 27 1 2.7173 6.6684 0.5163 28 1 4.4354 7.1338 0.5154 29 1 6.2264 5.2371 -0.0002 30 1 8.7889 4.4614 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037624458.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:14 Heat of formation + Delta-G solvation = -86.301895 kcal Electronic energy + Delta-G solvation = -15021.317382 eV Core-core repulsion = 12394.795707 eV Total energy + Delta-G solvation = -2626.521675 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52970 -40.42875 -37.27427 -35.73679 -32.71571 -32.11832 -31.43572 -28.01668 -27.17246 -24.22123 -22.69176 -21.03423 -20.57156 -19.32016 -18.27712 -17.39372 -17.23312 -16.65224 -15.53698 -15.26837 -14.67136 -14.55454 -14.27869 -13.74703 -13.57099 -13.18812 -13.09711 -12.92771 -12.90271 -12.74062 -12.68415 -12.42929 -12.01077 -11.74179 -11.37027 -11.32800 -10.91672 -9.43388 -8.62318 -8.57937 -6.28538 0.67945 1.37255 1.43441 1.51644 2.09336 2.23780 2.30925 2.44138 2.91760 3.52786 4.02166 4.14135 4.35559 4.37493 4.52705 4.65527 4.92222 4.93415 4.98029 5.10612 5.15697 5.22260 5.31392 5.50703 5.71241 5.91056 6.20854 6.37733 6.79644 6.93440 7.03839 7.33419 7.39961 8.32570 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.022923 B = 0.009963 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.194721 B = 2809.681166 C = 4005.125063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.053 3.947 3 O -0.371 6.371 4 C 0.514 3.486 5 O -0.576 6.576 6 C -0.231 4.231 7 N -0.559 5.559 8 H 0.412 0.588 9 C 0.074 3.926 10 C -0.076 4.076 11 C -0.279 4.279 12 C 0.090 3.910 13 C -0.453 4.453 14 H 0.070 0.930 15 C 0.033 3.967 16 N -0.803 5.803 17 Si 0.987 3.013 18 H -0.260 1.260 19 H -0.252 1.252 20 H -0.272 1.272 21 H 0.102 0.898 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.287 1.712 -0.022 8.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 O -0.290 6.290 4 C 0.371 3.629 5 O -0.473 6.473 6 C -0.334 4.334 7 N -0.163 5.163 8 H 0.249 0.751 9 C -0.042 4.042 10 C -0.133 4.133 11 C -0.307 4.307 12 C 0.082 3.918 13 C -0.483 4.483 14 H 0.089 0.911 15 C -0.184 4.184 16 N -0.430 5.430 17 Si 0.807 3.193 18 H -0.185 1.185 19 H -0.176 1.176 20 H -0.197 1.197 21 H 0.121 0.879 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.170 0.830 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.113 1.522 -0.021 8.254 hybrid contribution 0.363 -0.904 -0.013 0.974 sum -7.750 0.618 -0.034 7.774 Atomic orbital electron populations 1.21775 0.89560 1.04370 1.03546 1.22743 0.97422 0.80789 1.01183 1.86118 1.24143 1.32638 1.86117 1.19807 0.79697 0.88521 0.74833 1.90702 1.60660 1.42489 1.53493 1.18840 0.91353 0.83001 1.40198 1.40936 1.07377 1.03557 1.64451 0.75117 1.21035 0.89801 0.91109 1.02286 1.20437 1.02758 0.86632 1.03514 1.21519 0.96527 0.94158 1.18505 1.18025 0.89409 0.94073 0.90298 1.19658 0.91068 0.94910 1.42651 0.91141 1.26878 1.02636 0.97470 0.91383 1.69605 1.24474 1.14359 1.34538 0.85147 0.76219 0.78256 0.79666 1.18471 1.17607 1.19682 0.87936 0.91272 0.91272 0.93004 0.93018 0.89815 0.89902 0.89699 0.82971 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 10.28 71.98 0.74 -2.32 16 2 C 0.05 1.81 6.10 71.98 0.44 2.25 16 3 O -0.37 -15.86 10.13 -59.16 -0.60 -16.45 16 4 C 0.51 27.13 7.91 69.89 0.55 27.69 16 5 O -0.58 -33.68 14.68 19.26 0.28 -33.40 16 6 C -0.23 -12.46 7.18 41.09 0.30 -12.17 16 7 N -0.56 -24.45 6.06 -170.63 -1.03 -25.49 16 8 H 0.41 14.80 8.96 -92.71 -0.83 13.97 16 9 C 0.07 3.16 7.08 41.06 0.29 3.45 16 10 C -0.08 -2.16 10.40 71.24 0.74 -1.42 16 11 C -0.28 -14.60 9.56 22.39 0.21 -14.39 16 12 C 0.09 5.30 5.97 -21.04 -0.13 5.17 16 13 C -0.45 -27.37 8.98 23.37 0.21 -27.16 16 14 H 0.07 4.50 6.11 -2.91 -0.02 4.48 16 15 C 0.03 1.77 5.50 85.39 0.47 2.24 16 16 N -0.80 -41.84 10.34 21.89 0.23 -41.61 16 17 Si 0.99 41.32 29.56 68.60 2.03 43.35 16 18 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 19 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 21 H 0.10 1.70 8.14 -2.39 -0.02 1.69 16 22 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 23 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 1.81 8.13 -2.38 -0.02 1.79 16 25 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.08 1.88 8.14 -2.38 -0.02 1.87 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.15 8.12 5.82 -2.91 -0.02 8.11 16 30 H 0.29 13.40 8.29 -92.71 -0.77 12.63 16 Total: -1.00 -71.44 265.33 5.06 -66.37 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.33 Total: 23.88 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 3.83 Total: -16.66 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -0.81 Total: -67.10 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -0.32 Total: -49.85 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -71.44 5.06 -66.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037624458.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.928 kcal (2) G-P(sol) polarization free energy of solvation -71.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds