Wall clock time and date at job start Mon Mar 30 2020 02:58:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35743 * 117.00380 * 2 1
4 4 C 1.38814 * 119.80408 * 359.97438 * 3 2 1
5 5 C 1.38166 * 120.19017 * 180.02562 * 4 3 2
6 6 O 1.35694 * 120.10535 * 180.02562 * 5 4 3
7 7 C 1.42908 * 117.00009 * 359.97438 * 6 5 4
8 8 C 1.41472 * 119.79364 * 359.97438 * 5 4 3
9 9 C 1.40982 * 120.19080 * 179.97438 * 8 5 4
10 10 H 1.07994 * 120.00339 * 335.24650 * 9 8 5
11 11 C 1.39824 * 119.99971 * 154.97084 * 9 8 5
12 12 N 1.30951 * 120.00147 * 342.73965 * 11 9 8
13 13 Si 1.86794 * 120.00086 * 162.73231 * 11 9 8
14 14 H 1.48504 * 109.47257 * 0.02562 * 13 11 9
15 15 H 1.48500 * 109.47522 * 120.00250 * 13 11 9
16 16 H 1.48501 * 109.47343 * 240.00334 * 13 11 9
17 17 C 1.40763 * 119.61660 * 0.24827 * 8 5 4
18 18 C 1.37803 * 119.80778 * 359.49542 * 17 8 5
19 19 N 1.39983 * 119.90411 * 180.25123 * 18 17 8
20 20 H 1.08994 * 109.47611 * 179.97438 * 1 2 3
21 21 H 1.09001 * 109.47472 * 300.00544 * 1 2 3
22 22 H 1.09009 * 109.47019 * 60.00177 * 1 2 3
23 23 H 1.08006 * 119.90699 * 0.02562 * 4 3 2
24 24 H 1.08996 * 109.46987 * 180.02562 * 7 6 5
25 25 H 1.09002 * 109.46708 * 299.99932 * 7 6 5
26 26 H 1.08994 * 109.46840 * 60.00247 * 7 6 5
27 27 H 0.96998 * 120.00364 * 179.97438 * 12 11 9
28 28 H 1.08005 * 120.09571 * 179.74543 * 17 8 5
29 29 H 0.96995 * 120.00239 * 180.28335 * 19 18 17
30 30 H 0.97003 * 119.99438 * 0.27331 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0453 1.2094 0.0000
4 6 1.2854 2.3711 -0.0005
5 6 1.9044 3.6063 -0.0011
6 8 1.1599 4.7408 -0.0011
7 6 -0.2606 4.5845 -0.0011
8 6 3.3170 3.6847 -0.0005
9 6 3.9573 4.9407 -0.0016
10 1 3.4462 5.8071 -0.3944
11 6 5.2521 5.0657 0.5111
12 7 5.7425 4.1311 1.2863
13 14 6.2826 6.5658 0.0903
14 1 5.5042 7.4683 -0.7957
15 1 6.6408 7.2864 1.3384
16 1 7.5217 6.1358 -0.6060
17 6 4.0793 2.5014 -0.0047
18 6 3.4452 1.2779 0.0012
19 7 4.2014 0.0999 0.0023
20 1 -0.3634 -1.0276 -0.0005
21 1 -0.3634 0.5139 0.8899
22 1 -0.3633 0.5138 -0.8901
23 1 0.2071 2.3092 -0.0005
24 1 -0.7341 5.5663 -0.0015
25 1 -0.5655 4.0340 -0.8911
26 1 -0.5655 4.0341 0.8889
27 1 6.6409 4.2176 1.6417
28 1 5.1582 2.5522 -0.0085
29 1 3.7565 -0.7620 0.0023
30 1 5.1704 0.1457 0.0030
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000038523631.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:03
Heat of formation + Delta-G solvation = -52.865753 kcal
Electronic energy + Delta-G solvation = -15332.205512 eV
Core-core repulsion = 12707.133737 eV
Total energy + Delta-G solvation = -2625.071775 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 223.100 amu
Computer time = 2.14 seconds
Orbital eigenvalues (eV)
-39.05273 -37.52288 -35.79931 -33.74694 -32.12206 -29.19447 -27.36535 -27.05322
-26.05631 -24.13798 -20.89845 -20.30168 -17.62402 -17.11199 -16.20671 -15.27022
-15.12889 -14.88762 -14.72203 -14.45278 -13.70969 -13.61214 -12.94923 -12.34313
-12.02899 -11.88340 -11.35651 -11.13864 -10.86818 -10.71690 -10.47085 -10.44774
-10.09270 -9.99020 -9.61416 -9.13163 -8.39505 -7.18131 -6.67680 -5.87277
-4.08512 2.82019 3.06308 3.15763 3.22693 3.30941 4.04826 4.34134
4.58462 4.72336 5.12379 5.63444 5.66140 5.73719 5.80363 5.85433
5.87767 6.00061 6.12420 6.64595 6.81674 7.18170 7.22718 7.39112
7.67089 7.76053 8.07498 8.28245 8.50276 8.69851 8.84667 8.97022
8.99203 9.22101 10.32544
Molecular weight = 223.10amu
Principal moments of inertia in cm(-1)
A = 0.028998 B = 0.010259 C = 0.007763
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 965.367366 B = 2728.785830 C = 3605.825933
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.043 3.957
2 O -0.332 6.332
3 C -0.046 4.046
4 C -0.215 4.215
5 C 0.002 3.998
6 O -0.310 6.310
7 C 0.036 3.964
8 C 0.112 3.888
9 C -0.444 4.444
10 H 0.082 0.918
11 C 0.073 3.927
12 N -0.799 5.799
13 Si 0.906 3.094
14 H -0.261 1.261
15 H -0.277 1.277
16 H -0.274 1.274
17 C -0.192 4.192
18 C 0.189 3.811
19 N -0.890 5.890
20 H 0.080 0.920
21 H 0.039 0.961
22 H 0.039 0.961
23 H 0.104 0.896
24 H 0.080 0.920
25 H 0.036 0.964
26 H 0.037 0.963
27 H 0.277 0.723
28 H 0.132 0.868
29 H 0.387 0.613
30 H 0.386 0.614
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.100 -3.326 -1.713 6.325
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 O -0.248 6.248
3 C -0.093 4.093
4 C -0.235 4.235
5 C -0.043 4.043
6 O -0.225 6.225
7 C -0.060 4.060
8 C 0.109 3.891
9 C -0.474 4.474
10 H 0.100 0.900
11 C -0.143 4.143
12 N -0.425 5.425
13 Si 0.731 3.269
14 H -0.185 1.185
15 H -0.202 1.202
16 H -0.199 1.199
17 C -0.216 4.216
18 C 0.088 3.912
19 N -0.432 5.432
20 H 0.098 0.902
21 H 0.057 0.943
22 H 0.057 0.943
23 H 0.122 0.878
24 H 0.099 0.901
25 H 0.055 0.945
26 H 0.056 0.944
27 H 0.087 0.913
28 H 0.150 0.850
29 H 0.213 0.787
30 H 0.213 0.787
Dipole moment (debyes) X Y Z Total
from point charges -4.798 -3.267 -1.571 6.014
hybrid contribution 0.103 0.282 -0.006 0.300
sum -4.696 -2.985 -1.576 5.783
Atomic orbital electron populations
1.22628 0.81303 1.01422 1.00014 1.85726 1.18814 1.28341 1.91908
1.17722 0.89766 0.82895 1.18868 1.20479 0.97505 0.92123 1.13414
1.18852 0.91060 0.83179 1.11244 1.85973 1.15764 1.30144 1.90584
1.22691 0.82271 1.01480 0.99598 1.16753 0.86661 0.93864 0.91872
1.19339 0.97998 0.95242 1.34823 0.90022 1.25860 0.98049 0.97602
0.92824 1.69902 1.16325 1.33386 1.22925 0.86290 0.79708 0.81724
0.79140 1.18452 1.20211 1.19923 1.20423 0.99627 0.88150 1.13429
1.16996 0.86616 0.87365 1.00199 1.42100 1.07268 1.05249 1.88598
0.90201 0.94254 0.94281 0.87817 0.90108 0.94538 0.94447 0.91269
0.85010 0.78704 0.78687
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.67 9.80 101.05 0.99 1.66 16
2 O -0.33 -6.84 9.71 -18.94 -0.18 -7.02 16
3 C -0.05 -1.08 6.73 -38.65 -0.26 -1.34 16
4 C -0.22 -5.01 8.00 -39.39 -0.32 -5.33 16
5 C 0.00 0.05 6.72 -38.38 -0.26 -0.21 16
6 O -0.31 -7.39 9.77 -18.78 -0.18 -7.58 16
7 C 0.04 0.63 9.81 101.05 0.99 1.62 16
8 C 0.11 3.09 5.58 -106.67 -0.60 2.49 16
9 C -0.44 -12.23 8.70 -37.95 -0.33 -12.56 16
10 H 0.08 2.24 7.64 -52.49 -0.40 1.84 16
11 C 0.07 1.87 5.14 -17.33 -0.09 1.78 16
12 N -0.80 -20.92 10.97 55.54 0.61 -20.31 16
13 Si 0.91 19.25 29.59 -169.99 -5.03 14.22 16
14 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16
15 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16
16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16
17 C -0.19 -5.05 8.49 -38.79 -0.33 -5.38 16
18 C 0.19 4.55 6.76 -83.57 -0.57 3.99 16
19 N -0.89 -17.67 9.09 32.51 0.30 -17.38 16
20 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16
21 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16
22 H 0.04 0.59 7.64 -51.92 -0.40 0.19 16
23 H 0.10 2.10 4.47 -52.48 -0.23 1.87 16
24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16
25 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16
26 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16
27 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16
28 H 0.13 3.52 6.19 -52.48 -0.32 3.20 16
29 H 0.39 6.98 8.18 -40.82 -0.33 6.65 16
30 H 0.39 6.96 8.84 -40.82 -0.36 6.60 16
LS Contribution 256.67 15.07 3.87 3.87
Total: -1.00 -30.09 256.67 -4.61 -34.70
By element:
Atomic # 1 Polarization: 15.99 SS G_CDS: -3.22 Total: 12.77 kcal
Atomic # 6 Polarization: -12.51 SS G_CDS: -0.76 Total: -13.27 kcal
Atomic # 7 Polarization: -38.60 SS G_CDS: 0.90 Total: -37.69 kcal
Atomic # 8 Polarization: -14.23 SS G_CDS: -0.37 Total: -14.60 kcal
Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal
Total LS contribution 3.87 Total: 3.87 kcal
Total: -30.09 -4.61 -34.70 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000038523631.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.166 kcal
(2) G-P(sol) polarization free energy of solvation -30.092 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.257 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.608 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.700 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.866 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.14 seconds