Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35743 * 117.00380 * 2 1 4 4 C 1.38814 * 119.80408 * 359.97438 * 3 2 1 5 5 C 1.38166 * 120.19017 * 180.02562 * 4 3 2 6 6 O 1.35694 * 120.10535 * 180.02562 * 5 4 3 7 7 C 1.42908 * 117.00009 * 359.97438 * 6 5 4 8 8 C 1.41472 * 119.79364 * 359.97438 * 5 4 3 9 9 C 1.40982 * 120.19080 * 179.97438 * 8 5 4 10 10 H 1.07994 * 120.00339 * 335.24650 * 9 8 5 11 11 C 1.39824 * 119.99971 * 154.97084 * 9 8 5 12 12 N 1.30951 * 120.00147 * 342.73965 * 11 9 8 13 13 Si 1.86794 * 120.00086 * 162.73231 * 11 9 8 14 14 H 1.48504 * 109.47257 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47522 * 120.00250 * 13 11 9 16 16 H 1.48501 * 109.47343 * 240.00334 * 13 11 9 17 17 C 1.40763 * 119.61660 * 0.24827 * 8 5 4 18 18 C 1.37803 * 119.80778 * 359.49542 * 17 8 5 19 19 N 1.39983 * 119.90411 * 180.25123 * 18 17 8 20 20 H 1.08994 * 109.47611 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47472 * 300.00544 * 1 2 3 22 22 H 1.09009 * 109.47019 * 60.00177 * 1 2 3 23 23 H 1.08006 * 119.90699 * 0.02562 * 4 3 2 24 24 H 1.08996 * 109.46987 * 180.02562 * 7 6 5 25 25 H 1.09002 * 109.46708 * 299.99932 * 7 6 5 26 26 H 1.08994 * 109.46840 * 60.00247 * 7 6 5 27 27 H 0.96998 * 120.00364 * 179.97438 * 12 11 9 28 28 H 1.08005 * 120.09571 * 179.74543 * 17 8 5 29 29 H 0.96995 * 120.00239 * 180.28335 * 19 18 17 30 30 H 0.97003 * 119.99438 * 0.27331 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2854 2.3711 -0.0005 5 6 1.9044 3.6063 -0.0011 6 8 1.1599 4.7408 -0.0011 7 6 -0.2606 4.5845 -0.0011 8 6 3.3170 3.6847 -0.0005 9 6 3.9573 4.9407 -0.0016 10 1 3.4462 5.8071 -0.3944 11 6 5.2521 5.0657 0.5111 12 7 5.7425 4.1311 1.2863 13 14 6.2826 6.5658 0.0903 14 1 5.5042 7.4683 -0.7957 15 1 6.6408 7.2864 1.3384 16 1 7.5217 6.1358 -0.6060 17 6 4.0793 2.5014 -0.0047 18 6 3.4452 1.2779 0.0012 19 7 4.2014 0.0999 0.0023 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 0.2071 2.3092 -0.0005 24 1 -0.7341 5.5663 -0.0015 25 1 -0.5655 4.0340 -0.8911 26 1 -0.5655 4.0341 0.8889 27 1 6.6409 4.2176 1.6417 28 1 5.1582 2.5522 -0.0085 29 1 3.7565 -0.7620 0.0023 30 1 5.1704 0.1457 0.0030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038523631.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = -52.865753 kcal Electronic energy + Delta-G solvation = -15332.205512 eV Core-core repulsion = 12707.133737 eV Total energy + Delta-G solvation = -2625.071775 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -39.05273 -37.52288 -35.79931 -33.74694 -32.12206 -29.19447 -27.36535 -27.05322 -26.05631 -24.13798 -20.89845 -20.30168 -17.62402 -17.11199 -16.20671 -15.27022 -15.12889 -14.88762 -14.72203 -14.45278 -13.70969 -13.61214 -12.94923 -12.34313 -12.02899 -11.88340 -11.35651 -11.13864 -10.86818 -10.71690 -10.47085 -10.44774 -10.09270 -9.99020 -9.61416 -9.13163 -8.39505 -7.18131 -6.67680 -5.87277 -4.08512 2.82019 3.06308 3.15763 3.22693 3.30941 4.04826 4.34134 4.58462 4.72336 5.12379 5.63444 5.66140 5.73719 5.80363 5.85433 5.87767 6.00061 6.12420 6.64595 6.81674 7.18170 7.22718 7.39112 7.67089 7.76053 8.07498 8.28245 8.50276 8.69851 8.84667 8.97022 8.99203 9.22101 10.32544 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.028998 B = 0.010259 C = 0.007763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.367366 B = 2728.785830 C = 3605.825933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.332 6.332 3 C -0.046 4.046 4 C -0.215 4.215 5 C 0.002 3.998 6 O -0.310 6.310 7 C 0.036 3.964 8 C 0.112 3.888 9 C -0.444 4.444 10 H 0.082 0.918 11 C 0.073 3.927 12 N -0.799 5.799 13 Si 0.906 3.094 14 H -0.261 1.261 15 H -0.277 1.277 16 H -0.274 1.274 17 C -0.192 4.192 18 C 0.189 3.811 19 N -0.890 5.890 20 H 0.080 0.920 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.104 0.896 24 H 0.080 0.920 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.277 0.723 28 H 0.132 0.868 29 H 0.387 0.613 30 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 -3.326 -1.713 6.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.248 6.248 3 C -0.093 4.093 4 C -0.235 4.235 5 C -0.043 4.043 6 O -0.225 6.225 7 C -0.060 4.060 8 C 0.109 3.891 9 C -0.474 4.474 10 H 0.100 0.900 11 C -0.143 4.143 12 N -0.425 5.425 13 Si 0.731 3.269 14 H -0.185 1.185 15 H -0.202 1.202 16 H -0.199 1.199 17 C -0.216 4.216 18 C 0.088 3.912 19 N -0.432 5.432 20 H 0.098 0.902 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.122 0.878 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.150 0.850 29 H 0.213 0.787 30 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -4.798 -3.267 -1.571 6.014 hybrid contribution 0.103 0.282 -0.006 0.300 sum -4.696 -2.985 -1.576 5.783 Atomic orbital electron populations 1.22628 0.81303 1.01422 1.00014 1.85726 1.18814 1.28341 1.91908 1.17722 0.89766 0.82895 1.18868 1.20479 0.97505 0.92123 1.13414 1.18852 0.91060 0.83179 1.11244 1.85973 1.15764 1.30144 1.90584 1.22691 0.82271 1.01480 0.99598 1.16753 0.86661 0.93864 0.91872 1.19339 0.97998 0.95242 1.34823 0.90022 1.25860 0.98049 0.97602 0.92824 1.69902 1.16325 1.33386 1.22925 0.86290 0.79708 0.81724 0.79140 1.18452 1.20211 1.19923 1.20423 0.99627 0.88150 1.13429 1.16996 0.86616 0.87365 1.00199 1.42100 1.07268 1.05249 1.88598 0.90201 0.94254 0.94281 0.87817 0.90108 0.94538 0.94447 0.91269 0.85010 0.78704 0.78687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 9.80 101.05 0.99 1.66 16 2 O -0.33 -6.84 9.71 -18.94 -0.18 -7.02 16 3 C -0.05 -1.08 6.73 -38.65 -0.26 -1.34 16 4 C -0.22 -5.01 8.00 -39.39 -0.32 -5.33 16 5 C 0.00 0.05 6.72 -38.38 -0.26 -0.21 16 6 O -0.31 -7.39 9.77 -18.78 -0.18 -7.58 16 7 C 0.04 0.63 9.81 101.05 0.99 1.62 16 8 C 0.11 3.09 5.58 -106.67 -0.60 2.49 16 9 C -0.44 -12.23 8.70 -37.95 -0.33 -12.56 16 10 H 0.08 2.24 7.64 -52.49 -0.40 1.84 16 11 C 0.07 1.87 5.14 -17.33 -0.09 1.78 16 12 N -0.80 -20.92 10.97 55.54 0.61 -20.31 16 13 Si 0.91 19.25 29.59 -169.99 -5.03 14.22 16 14 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 15 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 C -0.19 -5.05 8.49 -38.79 -0.33 -5.38 16 18 C 0.19 4.55 6.76 -83.57 -0.57 3.99 16 19 N -0.89 -17.67 9.09 32.51 0.30 -17.38 16 20 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 21 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 22 H 0.04 0.59 7.64 -51.92 -0.40 0.19 16 23 H 0.10 2.10 4.47 -52.48 -0.23 1.87 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16 26 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 27 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 28 H 0.13 3.52 6.19 -52.48 -0.32 3.20 16 29 H 0.39 6.98 8.18 -40.82 -0.33 6.65 16 30 H 0.39 6.96 8.84 -40.82 -0.36 6.60 16 LS Contribution 256.67 15.07 3.87 3.87 Total: -1.00 -30.09 256.67 -4.61 -34.70 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -3.22 Total: 12.77 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -0.76 Total: -13.27 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.90 Total: -37.69 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.37 Total: -14.60 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.09 -4.61 -34.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038523631.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.166 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds