Wall clock time and date at job start Mon Mar 30 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00522 * 2 1 4 4 C 1.50696 * 109.46711 * 293.95579 * 3 2 1 5 5 H 1.07992 * 120.00468 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99697 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99945 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99938 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47157 * 90.00228 * 8 6 4 10 10 H 1.48498 * 109.47454 * 210.00065 * 8 6 4 11 11 H 1.48506 * 109.47506 * 330.00482 * 8 6 4 12 12 C 1.46908 * 110.99889 * 123.95677 * 2 1 3 13 13 C 1.50692 * 109.47102 * 66.04092 * 12 2 1 14 14 O 1.21439 * 120.00453 * 0.02562 * 13 12 2 15 15 C 1.41316 * 119.99905 * 180.02562 * 13 12 2 16 16 C 1.38068 * 126.11784 * 179.97438 * 15 13 12 17 17 C 1.40126 * 106.51924 * 179.74048 * 16 15 13 18 18 C 1.35288 * 107.22764 * 0.23166 * 17 16 15 19 19 O 1.33837 * 109.05863 * 359.97438 * 18 17 16 20 20 H 1.09000 * 109.46799 * 296.04927 * 1 2 3 21 21 H 1.09001 * 109.47010 * 56.04200 * 1 2 3 22 22 H 1.08995 * 109.47381 * 176.04741 * 1 2 3 23 23 H 1.09000 * 109.47006 * 53.95164 * 3 2 1 24 24 H 1.08998 * 109.47128 * 173.95426 * 3 2 1 25 25 H 0.97006 * 119.99707 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.46700 * 306.03992 * 12 2 1 27 27 H 1.08997 * 109.47016 * 186.04281 * 12 2 1 28 28 H 1.08002 * 126.74359 * 0.02562 * 16 15 13 29 29 H 1.07998 * 126.38586 * 180.20349 * 17 16 15 30 30 H 1.07994 * 125.47208 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 -1.2984 5 1 1.0747 1.5112 -2.0487 6 6 2.0279 3.3491 -1.5289 7 7 1.7146 3.9389 -2.6618 8 14 3.0012 4.2756 -0.2314 9 1 4.4536 4.0621 -0.4557 10 1 2.6941 5.7256 -0.3237 11 1 2.6299 3.7758 1.1168 12 6 1.9954 -0.7661 1.1376 13 6 1.6368 -2.2204 0.9729 14 8 1.0045 -2.5837 0.0018 15 6 2.0363 -3.1615 1.9484 16 6 1.7775 -4.5175 1.9252 17 6 2.3619 -5.0546 3.0799 18 6 2.9371 -4.0305 3.7513 19 8 2.7378 -2.8953 3.0710 20 1 -0.3633 0.4513 0.9233 21 1 -0.3633 0.5740 -0.8524 22 1 -0.3634 -1.0252 -0.0708 23 1 1.5612 1.9273 0.8309 24 1 3.0798 1.3443 0.1082 25 1 1.9893 4.8550 -2.8238 26 1 1.5611 -0.3873 2.0628 27 1 3.0797 -0.6613 1.1756 28 1 1.2354 -5.0589 1.1639 29 1 2.3542 -6.0924 3.3786 30 1 3.4714 -4.1154 4.6860 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049136025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:07 Heat of formation + Delta-G solvation = -2.275474 kcal Electronic energy + Delta-G solvation = -14759.858513 eV Core-core repulsion = 12136.980497 eV Total energy + Delta-G solvation = -2622.878016 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.79798 -39.25904 -36.08519 -33.27168 -32.43061 -30.80968 -28.55874 -27.29322 -24.57521 -22.77419 -21.86382 -20.36233 -19.66871 -17.69038 -16.81144 -16.48804 -15.91684 -14.91875 -14.83328 -14.28867 -14.02106 -13.58079 -13.27377 -13.19306 -12.84304 -12.53747 -12.13876 -11.74070 -11.11782 -10.95621 -10.66220 -10.51773 -10.24743 -9.99173 -9.52414 -9.20765 -8.82853 -8.55190 -7.39177 -6.02773 -4.00211 0.68936 2.11366 2.71876 2.94110 3.29424 3.36698 3.37951 4.07843 4.43276 4.64433 4.68377 4.90815 5.27790 5.29493 5.45651 5.56664 5.63984 5.73843 5.84209 6.10461 6.19898 6.28621 6.68556 6.74683 6.87782 6.99686 7.55247 7.65885 7.86919 8.04144 8.66935 9.07272 9.58189 11.10370 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.050895 B = 0.006004 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.016829 B = 4662.116384 C = 5076.102757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.519 5.519 3 C 0.161 3.839 4 C -0.509 4.509 5 H 0.083 0.917 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.010 3.990 13 C 0.429 3.571 14 O -0.415 6.415 15 C -0.100 4.100 16 C -0.119 4.119 17 C -0.231 4.231 18 C -0.003 4.003 19 O -0.152 6.152 20 H 0.008 0.992 21 H 0.082 0.918 22 H 0.062 0.938 23 H -0.009 1.009 24 H 0.025 0.975 25 H 0.264 0.736 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.174 -15.181 14.594 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.243 5.243 3 C 0.035 3.965 4 C -0.547 4.547 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.120 4.120 13 C 0.306 3.694 14 O -0.289 6.289 15 C -0.151 4.151 16 C -0.139 4.139 17 C -0.250 4.250 18 C -0.074 4.074 19 O -0.046 6.046 20 H 0.027 0.973 21 H 0.101 0.899 22 H 0.081 0.919 23 H 0.008 0.992 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.122 0.878 28 H 0.178 0.822 29 H 0.173 0.827 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.102 -15.097 13.597 20.426 hybrid contribution 0.390 0.735 1.547 1.757 sum 2.492 -14.363 15.144 21.020 Atomic orbital electron populations 1.22407 0.87534 1.01243 1.00633 1.61813 1.08191 1.16330 1.37995 1.20244 0.94936 0.83710 0.97609 1.21026 1.35663 0.97219 1.00799 0.89942 1.24895 0.95822 0.97300 0.95302 1.69896 1.46864 1.13260 1.23861 0.86870 0.80910 0.79319 0.82700 1.20107 1.21172 1.19295 1.22421 1.02448 0.91914 0.95174 1.20024 0.77136 0.89923 0.82347 1.90614 1.29747 1.81660 1.26888 1.22166 1.05234 0.96536 0.91127 1.22519 0.99797 0.92811 0.98765 1.21857 1.04968 1.00948 0.97238 1.24519 1.01478 0.82968 0.98431 1.84129 1.56759 1.34393 1.29320 0.97342 0.89897 0.91932 0.99171 0.95703 0.92655 0.92171 0.87752 0.82184 0.82656 0.77410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.03 60.06 0.54 1.17 16 2 N -0.52 -11.58 4.49 -245.83 -1.10 -12.69 16 3 C 0.16 3.99 3.79 -4.98 -0.02 3.97 16 4 C -0.51 -14.81 9.01 -34.44 -0.31 -15.12 16 5 H 0.08 2.63 7.37 -52.49 -0.39 2.24 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 7 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 8 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 12 C 0.01 0.17 5.17 -4.98 -0.03 0.14 16 13 C 0.43 7.17 6.66 -33.14 -0.22 6.95 16 14 O -0.41 -8.00 14.75 5.42 0.08 -7.92 16 15 C -0.10 -1.39 6.89 -38.47 -0.26 -1.65 16 16 C -0.12 -1.41 10.61 -38.94 -0.41 -1.82 16 17 C -0.23 -2.07 10.86 -39.92 -0.43 -2.50 16 18 C 0.00 -0.03 12.06 29.68 0.36 0.33 16 19 O -0.15 -1.83 10.47 4.91 0.05 -1.78 16 20 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 21 H 0.08 1.90 6.76 -51.93 -0.35 1.55 16 22 H 0.06 1.23 5.88 -51.93 -0.31 0.93 16 23 H -0.01 -0.23 7.18 -51.93 -0.37 -0.60 16 24 H 0.02 0.60 7.36 -51.93 -0.38 0.22 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 27 H 0.10 1.72 7.93 -51.93 -0.41 1.31 16 28 H 0.16 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.21 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 262.66 15.07 3.96 3.96 Total: -1.00 -33.32 262.66 -5.28 -38.61 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -3.49 Total: -3.32 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.88 Total: -6.61 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: -0.33 Total: -39.82 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.13 Total: -9.70 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.32 -5.28 -38.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049136025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.333 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds