Wall clock time and date at job start Mon Mar 30 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00522 * 2 1 4 4 C 1.50696 * 109.46711 * 293.95579 * 3 2 1 5 5 H 1.07992 * 120.00468 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99697 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99945 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99938 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47157 * 90.00228 * 8 6 4 10 10 H 1.48498 * 109.47454 * 210.00065 * 8 6 4 11 11 H 1.48506 * 109.47506 * 330.00482 * 8 6 4 12 12 C 1.46908 * 110.99889 * 123.95677 * 2 1 3 13 13 C 1.50692 * 109.47102 * 66.04092 * 12 2 1 14 14 O 1.21439 * 120.00453 * 0.02562 * 13 12 2 15 15 C 1.41316 * 119.99905 * 180.02562 * 13 12 2 16 16 C 1.38068 * 126.11784 * 179.97438 * 15 13 12 17 17 C 1.40126 * 106.51924 * 179.74048 * 16 15 13 18 18 C 1.35288 * 107.22764 * 0.23166 * 17 16 15 19 19 O 1.33837 * 109.05863 * 359.97438 * 18 17 16 20 20 H 1.09000 * 109.46799 * 296.04927 * 1 2 3 21 21 H 1.09001 * 109.47010 * 56.04200 * 1 2 3 22 22 H 1.08995 * 109.47381 * 176.04741 * 1 2 3 23 23 H 1.09000 * 109.47006 * 53.95164 * 3 2 1 24 24 H 1.08998 * 109.47128 * 173.95426 * 3 2 1 25 25 H 0.97006 * 119.99707 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.46700 * 306.03992 * 12 2 1 27 27 H 1.08997 * 109.47016 * 186.04281 * 12 2 1 28 28 H 1.08002 * 126.74359 * 0.02562 * 16 15 13 29 29 H 1.07998 * 126.38586 * 180.20349 * 17 16 15 30 30 H 1.07994 * 125.47208 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 -1.2984 5 1 1.0747 1.5112 -2.0487 6 6 2.0279 3.3491 -1.5289 7 7 1.7146 3.9389 -2.6618 8 14 3.0012 4.2756 -0.2314 9 1 4.4536 4.0621 -0.4557 10 1 2.6941 5.7256 -0.3237 11 1 2.6299 3.7758 1.1168 12 6 1.9954 -0.7661 1.1376 13 6 1.6368 -2.2204 0.9729 14 8 1.0045 -2.5837 0.0018 15 6 2.0363 -3.1615 1.9484 16 6 1.7775 -4.5175 1.9252 17 6 2.3619 -5.0546 3.0799 18 6 2.9371 -4.0305 3.7513 19 8 2.7378 -2.8953 3.0710 20 1 -0.3633 0.4513 0.9233 21 1 -0.3633 0.5740 -0.8524 22 1 -0.3634 -1.0252 -0.0708 23 1 1.5612 1.9273 0.8309 24 1 3.0798 1.3443 0.1082 25 1 1.9893 4.8550 -2.8238 26 1 1.5611 -0.3873 2.0628 27 1 3.0797 -0.6613 1.1756 28 1 1.2354 -5.0589 1.1639 29 1 2.3542 -6.0924 3.3786 30 1 3.4714 -4.1154 4.6860 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049136025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:07 Heat of formation + Delta-G solvation = -26.831031 kcal Electronic energy + Delta-G solvation = -14760.923322 eV Core-core repulsion = 12136.980497 eV Total energy + Delta-G solvation = -2623.942825 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.63612 -40.58300 -37.77768 -34.63936 -34.06396 -31.93374 -30.28923 -28.85953 -26.23617 -24.09944 -22.73491 -22.03515 -20.77099 -19.05071 -18.65141 -17.45208 -16.99687 -16.46590 -16.30286 -16.05726 -15.63985 -15.16051 -14.50160 -14.20958 -13.98479 -13.93074 -13.51779 -13.50507 -12.88746 -12.67328 -12.45605 -12.35947 -11.90318 -11.55392 -11.04639 -10.83128 -10.78095 -9.68161 -9.09524 -8.27697 -6.32495 -0.31209 1.35365 1.36364 1.38795 1.49401 1.86222 1.90027 2.35731 2.86287 3.05110 3.38604 3.91677 3.97607 4.24253 4.28757 4.38759 4.48175 4.58194 4.60763 4.87096 4.90028 4.93682 5.00120 5.16553 5.39075 5.49868 5.83681 5.93881 6.20828 6.49309 6.61160 6.73774 7.30797 8.89326 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.050895 B = 0.006004 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.016829 B = 4662.116384 C = 5076.102757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.545 5.545 3 C 0.171 3.829 4 C -0.523 4.523 5 H 0.032 0.968 6 C 0.006 3.994 7 N -0.950 5.950 8 Si 0.953 3.047 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.246 1.246 12 C 0.008 3.992 13 C 0.436 3.564 14 O -0.461 6.461 15 C -0.144 4.144 16 C -0.111 4.111 17 C -0.238 4.238 18 C 0.025 3.975 19 O -0.163 6.163 20 H 0.024 0.976 21 H 0.049 0.951 22 H 0.072 0.928 23 H -0.003 1.003 24 H 0.037 0.963 25 H 0.268 0.732 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.161 0.839 29 H 0.188 0.812 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.888 -16.303 18.290 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.269 5.269 3 C 0.044 3.956 4 C -0.561 4.561 5 H 0.051 0.949 6 C -0.191 4.191 7 N -0.590 5.590 8 Si 0.776 3.224 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.170 1.170 12 C -0.120 4.120 13 C 0.317 3.683 14 O -0.339 6.339 15 C -0.193 4.193 16 C -0.130 4.130 17 C -0.257 4.257 18 C -0.045 4.045 19 O -0.058 6.058 20 H 0.043 0.957 21 H 0.068 0.932 22 H 0.090 0.910 23 H 0.015 0.985 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.135 0.865 28 H 0.178 0.822 29 H 0.205 0.795 30 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 3.816 -16.245 17.313 24.046 hybrid contribution -0.145 0.910 0.447 1.025 sum 3.671 -15.335 17.760 23.750 Atomic orbital electron populations 1.22262 0.87338 1.01388 0.99899 1.61643 1.08689 1.15329 1.41218 1.20019 0.95519 0.84936 0.95095 1.21255 1.35262 0.97735 1.01823 0.94946 1.25919 0.96979 0.98274 0.97920 1.70067 1.48520 1.13937 1.26500 0.85632 0.79331 0.77484 0.79979 1.18731 1.20701 1.16996 1.22536 1.03148 0.92244 0.94087 1.19922 0.76153 0.89844 0.82431 1.90594 1.32335 1.82089 1.28842 1.21548 1.08847 0.96537 0.92392 1.22819 0.98464 0.92262 0.99500 1.22260 1.04604 1.02780 0.96034 1.25615 0.98790 0.81520 0.98579 1.84119 1.56736 1.36012 1.28948 0.95718 0.93194 0.90958 0.98527 0.94544 0.92346 0.90177 0.86451 0.82179 0.79480 0.72510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.70 9.03 127.69 1.15 2.85 16 2 N -0.54 -24.53 4.49 -931.66 -4.18 -28.71 16 3 C 0.17 8.43 3.79 85.56 0.32 8.75 16 4 C -0.52 -31.44 9.01 25.60 0.23 -31.21 16 5 H 0.03 2.21 7.37 -2.91 -0.02 2.19 16 6 C 0.01 0.37 5.47 84.66 0.46 0.83 16 7 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 8 Si 0.95 44.09 27.47 68.60 1.88 45.97 16 9 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 12 C 0.01 0.28 5.17 85.55 0.44 0.72 16 13 C 0.44 14.51 6.66 26.44 0.18 14.69 16 14 O -0.46 -18.29 14.75 -3.53 -0.05 -18.34 16 15 C -0.14 -3.77 6.89 22.99 0.16 -3.62 16 16 C -0.11 -2.40 10.61 22.69 0.24 -2.16 16 17 C -0.24 -3.29 10.86 22.05 0.24 -3.05 16 18 C 0.03 0.30 12.06 67.14 0.81 1.11 16 19 O -0.16 -3.43 10.47 -5.35 -0.06 -3.49 16 20 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 21 H 0.05 2.44 6.76 -2.39 -0.02 2.42 16 22 H 0.07 2.96 5.88 -2.39 -0.01 2.95 16 23 H 0.00 -0.14 7.18 -2.39 -0.02 -0.16 16 24 H 0.04 1.71 7.36 -2.39 -0.02 1.69 16 25 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 26 H 0.08 2.44 8.12 -2.39 -0.02 2.42 16 27 H 0.12 3.68 7.93 -2.39 -0.02 3.66 16 28 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 29 H 0.19 1.33 8.06 -2.91 -0.02 1.30 16 30 H 0.26 0.29 8.06 -2.91 -0.02 0.27 16 Total: -1.00 -75.90 262.66 3.21 -72.69 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.08 Total: 3.40 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 4.24 Total: -11.08 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -3.88 Total: -89.15 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.11 Total: -21.83 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.97 kcal Total: -75.90 3.21 -72.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049136025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.863 kcal (2) G-P(sol) polarization free energy of solvation -75.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds