Wall clock time and date at job start Mon Mar 30 2020 03:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39866 * 125.89915 * 2 1 4 4 C 1.35320 * 107.91898 * 179.97438 * 3 2 1 5 5 N 1.34951 * 107.74569 * 359.97438 * 4 3 2 6 6 C 1.46504 * 126.03463 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46990 * 125.02933 * 6 5 4 8 8 O 1.21280 * 119.99895 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99947 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00093 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47036 * 179.97438 * 10 9 7 12 12 H 1.08005 * 120.00455 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99769 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99786 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99920 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.46943 * 89.99927 * 15 13 11 17 17 H 1.48501 * 109.47002 * 209.99547 * 15 13 11 18 18 H 1.48500 * 109.47232 * 329.99796 * 15 13 11 19 19 N 1.30844 * 125.89476 * 179.97438 * 2 1 3 20 20 H 1.09006 * 109.47315 * 270.01690 * 1 2 3 21 21 H 1.08994 * 109.47486 * 30.01360 * 1 2 3 22 22 H 1.09006 * 109.47537 * 150.01822 * 1 2 3 23 23 H 1.07993 * 126.04141 * 359.97438 * 3 2 1 24 24 H 1.07996 * 126.12765 * 180.02562 * 4 3 2 25 25 H 1.09001 * 109.46936 * 245.02312 * 6 5 4 26 26 H 1.08995 * 109.47043 * 5.02520 * 6 5 4 27 27 H 0.97000 * 119.99923 * 359.97438 * 9 7 6 28 28 H 1.08999 * 109.47247 * 300.00018 * 10 9 7 29 29 H 1.09005 * 109.47011 * 59.99438 * 10 9 7 30 30 H 0.97004 * 120.00195 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6342 0.0015 6 6 4.7899 -1.5009 0.0029 7 6 4.7116 -2.4548 1.1669 8 8 3.7629 -2.4143 1.9214 9 7 5.6964 -3.3522 1.3702 10 6 5.6206 -4.2791 2.5021 11 6 6.8355 -5.1706 2.5035 12 1 7.5891 -5.0579 1.7380 13 6 6.9857 -6.1298 3.4826 14 7 8.0462 -6.9075 3.4841 15 14 5.6828 -6.3244 4.8070 16 1 4.6600 -7.3015 4.3552 17 1 6.3172 -6.8142 6.0572 18 1 5.0357 -5.0123 5.0614 19 7 2.2741 -1.0600 0.0005 20 1 -0.3634 0.0003 1.0277 21 1 -0.3634 0.8898 -0.5140 22 1 -0.3634 -0.8902 -0.5136 23 1 1.9923 2.1597 -0.0004 24 1 4.4891 1.3484 0.0011 25 1 4.8267 -2.0663 -0.9283 26 1 5.6883 -0.8904 0.0931 27 1 6.4554 -3.3843 0.7670 28 1 5.5836 -3.7135 3.4331 29 1 4.7222 -4.8898 2.4121 30 1 8.1518 -7.5825 4.1727 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070688055.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:52 Heat of formation + Delta-G solvation = 39.836065 kcal Electronic energy + Delta-G solvation = -14520.133439 eV Core-core repulsion = 11931.374267 eV Total energy + Delta-G solvation = -2588.759172 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.09498 -38.86775 -34.43517 -33.73583 -32.41603 -30.46453 -29.47627 -28.04446 -25.71967 -22.22850 -21.04183 -20.26535 -19.55477 -17.54128 -16.93303 -16.18887 -15.30725 -15.02302 -14.56501 -14.13116 -13.86633 -13.52398 -13.14106 -12.98240 -12.61196 -12.43416 -12.33275 -12.01440 -11.76767 -11.07186 -10.79785 -10.37328 -10.01002 -9.59686 -9.51210 -8.98625 -8.82301 -8.43471 -8.24679 -6.25620 -4.28396 1.99961 2.51661 2.91807 3.04540 3.24886 3.31461 3.40042 3.79010 4.30278 4.60713 4.80448 4.99733 5.09392 5.12436 5.18287 5.32084 5.64872 5.67720 5.86025 5.89630 6.15667 6.72783 6.78918 7.01353 7.03416 7.14011 7.32090 7.89263 8.04866 8.41307 8.68235 8.81157 9.34147 10.86174 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.052479 B = 0.005522 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.416048 B = 5069.536580 C = 5440.284500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.057 3.943 3 C -0.273 4.273 4 C 0.051 3.949 5 N -0.357 5.357 6 C 0.113 3.887 7 C 0.486 3.514 8 O -0.528 6.528 9 N -0.703 5.703 10 C 0.222 3.778 11 C -0.545 4.545 12 H 0.080 0.920 13 C 0.079 3.921 14 N -0.891 5.891 15 Si 0.876 3.124 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.261 1.261 19 N -0.261 5.261 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.144 0.856 24 H 0.172 0.828 25 H 0.111 0.889 26 H 0.122 0.878 27 H 0.397 0.603 28 H 0.025 0.975 29 H 0.022 0.978 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.767 14.804 -8.439 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.110 4.110 3 C -0.303 4.303 4 C -0.094 4.094 5 N -0.139 5.139 6 C -0.012 4.012 7 C 0.268 3.732 8 O -0.404 6.404 9 N -0.353 5.353 10 C 0.100 3.900 11 C -0.583 4.583 12 H 0.098 0.902 13 C -0.125 4.125 14 N -0.528 5.528 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.186 1.186 19 N -0.083 5.083 20 H 0.093 0.907 21 H 0.092 0.908 22 H 0.089 0.911 23 H 0.162 0.838 24 H 0.189 0.811 25 H 0.129 0.871 26 H 0.140 0.860 27 H 0.231 0.769 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.168 13.290 -7.768 17.427 hybrid contribution 0.065 0.637 0.484 0.803 sum -8.103 13.927 -7.284 17.682 Atomic orbital electron populations 1.20113 0.86997 1.02800 1.02801 1.22375 0.96970 0.90940 1.00764 1.21301 0.91652 0.99536 1.17798 1.22503 0.99747 0.84639 1.02505 1.48032 1.05050 1.04174 1.56616 1.21570 0.85521 0.93878 1.00263 1.20399 0.83867 0.82466 0.86450 1.90743 1.32451 1.70583 1.46639 1.46120 1.22606 1.35062 1.31551 1.19508 0.97921 0.88111 0.84412 1.21069 1.05576 1.17254 1.14420 0.90167 1.24783 0.95537 0.94803 0.97386 1.69874 1.27625 1.20678 1.34655 0.86821 0.81911 0.79580 0.81415 1.19769 1.20818 1.18583 1.77486 0.86029 1.22341 1.22487 0.90747 0.90792 0.91149 0.83790 0.81080 0.87077 0.86025 0.76914 0.95689 0.96044 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.45 36.00 0.38 -0.37 16 2 C 0.06 0.84 7.22 -82.41 -0.59 0.24 16 3 C -0.27 -3.46 10.74 -40.01 -0.43 -3.89 16 4 C 0.05 0.64 11.45 -17.22 -0.20 0.44 16 5 N -0.36 -5.50 3.40 -62.54 -0.21 -5.71 16 6 C 0.11 1.50 6.99 -5.19 -0.04 1.47 16 7 C 0.49 9.24 7.86 -10.99 -0.09 9.16 16 8 O -0.53 -12.65 15.71 5.56 0.09 -12.56 16 9 N -0.70 -13.81 5.55 -61.47 -0.34 -14.15 16 10 C 0.22 5.46 4.50 -5.20 -0.02 5.44 16 11 C -0.55 -14.82 9.83 -34.44 -0.34 -15.16 16 12 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 13 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 14 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 15 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 19 N -0.26 -4.69 11.64 33.67 0.39 -4.30 16 20 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 24 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 25 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.12 1.09 8.07 -51.93 -0.42 0.68 16 27 H 0.40 6.53 8.32 -40.82 -0.34 6.19 16 28 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 29 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 268.97 15.07 4.05 4.05 Total: -1.00 -35.76 268.97 -4.98 -40.74 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -3.64 Total: 1.12 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.43 Total: -0.54 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.61 Total: -49.70 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -35.76 -4.98 -40.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070688055.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.576 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds