Wall clock time and date at job start Mon Mar 30 2020 03:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39866 * 125.89915 * 2 1 4 4 C 1.35320 * 107.91898 * 179.97438 * 3 2 1 5 5 N 1.34951 * 107.74569 * 359.97438 * 4 3 2 6 6 C 1.46504 * 126.03463 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46990 * 125.02933 * 6 5 4 8 8 O 1.21280 * 119.99895 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99947 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00093 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47036 * 179.97438 * 10 9 7 12 12 H 1.08005 * 120.00455 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99769 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99786 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99920 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.46943 * 89.99927 * 15 13 11 17 17 H 1.48501 * 109.47002 * 209.99547 * 15 13 11 18 18 H 1.48500 * 109.47232 * 329.99796 * 15 13 11 19 19 N 1.30844 * 125.89476 * 179.97438 * 2 1 3 20 20 H 1.09006 * 109.47315 * 270.01690 * 1 2 3 21 21 H 1.08994 * 109.47486 * 30.01360 * 1 2 3 22 22 H 1.09006 * 109.47537 * 150.01822 * 1 2 3 23 23 H 1.07993 * 126.04141 * 359.97438 * 3 2 1 24 24 H 1.07996 * 126.12765 * 180.02562 * 4 3 2 25 25 H 1.09001 * 109.46936 * 245.02312 * 6 5 4 26 26 H 1.08995 * 109.47043 * 5.02520 * 6 5 4 27 27 H 0.97000 * 119.99923 * 359.97438 * 9 7 6 28 28 H 1.08999 * 109.47247 * 300.00018 * 10 9 7 29 29 H 1.09005 * 109.47011 * 59.99438 * 10 9 7 30 30 H 0.97004 * 120.00195 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6342 0.0015 6 6 4.7899 -1.5009 0.0029 7 6 4.7116 -2.4548 1.1669 8 8 3.7629 -2.4143 1.9214 9 7 5.6964 -3.3522 1.3702 10 6 5.6206 -4.2791 2.5021 11 6 6.8355 -5.1706 2.5035 12 1 7.5891 -5.0579 1.7380 13 6 6.9857 -6.1298 3.4826 14 7 8.0462 -6.9075 3.4841 15 14 5.6828 -6.3244 4.8070 16 1 4.6600 -7.3015 4.3552 17 1 6.3172 -6.8142 6.0572 18 1 5.0357 -5.0123 5.0614 19 7 2.2741 -1.0600 0.0005 20 1 -0.3634 0.0003 1.0277 21 1 -0.3634 0.8898 -0.5140 22 1 -0.3634 -0.8902 -0.5136 23 1 1.9923 2.1597 -0.0004 24 1 4.4891 1.3484 0.0011 25 1 4.8267 -2.0663 -0.9283 26 1 5.6883 -0.8904 0.0931 27 1 6.4554 -3.3843 0.7670 28 1 5.5836 -3.7135 3.4331 29 1 4.7222 -4.8898 2.4121 30 1 8.1518 -7.5825 4.1727 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070688055.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:51 Heat of formation + Delta-G solvation = 12.332360 kcal Electronic energy + Delta-G solvation = -14521.326089 eV Core-core repulsion = 11931.374267 eV Total energy + Delta-G solvation = -2589.951822 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.12061 -40.41654 -36.25198 -34.84388 -34.43175 -31.55621 -30.61882 -29.70041 -26.93333 -24.09811 -22.09703 -21.72341 -20.68848 -19.28216 -18.14625 -17.84150 -16.76825 -16.66760 -16.03859 -15.57557 -15.04580 -14.70344 -14.68467 -14.37756 -14.13168 -13.78849 -13.51445 -13.10733 -12.97872 -12.85840 -12.72601 -11.98449 -11.69316 -11.41118 -11.06131 -10.95446 -10.12102 -10.00962 -9.43855 -8.43460 -6.50114 0.99352 1.28676 1.31657 1.43395 1.55076 1.59116 1.94948 2.24270 2.38415 2.92007 3.65876 3.80944 4.03150 4.12154 4.18281 4.47703 4.73313 4.82164 4.84603 4.95682 4.97006 5.05301 5.21678 5.27000 5.43054 5.81234 6.03440 6.17219 6.50628 6.75533 6.87765 7.11990 7.33291 8.71057 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.052479 B = 0.005522 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.416048 B = 5069.536580 C = 5440.284500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.043 3.957 3 C -0.285 4.285 4 C 0.057 3.943 5 N -0.375 5.375 6 C 0.122 3.878 7 C 0.484 3.516 8 O -0.581 6.581 9 N -0.699 5.699 10 C 0.234 3.766 11 C -0.546 4.546 12 H 0.066 0.934 13 C 0.030 3.970 14 N -0.928 5.928 15 Si 0.933 3.067 16 H -0.267 1.267 17 H -0.270 1.270 18 H -0.265 1.265 19 N -0.329 5.329 20 H 0.075 0.925 21 H 0.104 0.896 22 H 0.064 0.936 23 H 0.173 0.827 24 H 0.218 0.782 25 H 0.136 0.864 26 H 0.174 0.826 27 H 0.414 0.586 28 H 0.010 0.990 29 H 0.005 0.995 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.874 16.758 -9.087 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C -0.314 4.314 4 C -0.087 4.087 5 N -0.157 5.157 6 C -0.002 4.002 7 C 0.269 3.731 8 O -0.461 6.461 9 N -0.351 5.351 10 C 0.110 3.890 11 C -0.584 4.584 12 H 0.084 0.916 13 C -0.171 4.171 14 N -0.567 5.567 15 Si 0.757 3.243 16 H -0.193 1.193 17 H -0.195 1.195 18 H -0.190 1.190 19 N -0.152 5.152 20 H 0.094 0.906 21 H 0.122 0.878 22 H 0.083 0.917 23 H 0.191 0.809 24 H 0.234 0.766 25 H 0.154 0.846 26 H 0.191 0.809 27 H 0.250 0.750 28 H 0.028 0.972 29 H 0.023 0.977 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.260 15.260 -8.453 19.302 hybrid contribution 0.113 0.094 0.630 0.646 sum -8.147 15.354 -7.824 19.061 Atomic orbital electron populations 1.20241 0.85208 1.04026 1.03210 1.23054 0.98485 0.91272 0.99521 1.21759 0.91663 1.00354 1.17579 1.23311 1.01374 0.83822 1.00213 1.48225 1.04591 1.05433 1.57427 1.21747 0.86956 0.93631 0.97892 1.21421 0.82195 0.82262 0.87191 1.90718 1.34355 1.72025 1.48994 1.45910 1.23847 1.34660 1.30665 1.19061 0.95894 0.88240 0.85792 1.21273 1.05907 1.17407 1.13763 0.91632 1.25528 0.97276 0.94733 0.99518 1.69963 1.29273 1.21592 1.35841 0.85925 0.79637 0.79280 0.79420 1.19254 1.19525 1.18999 1.77401 0.87825 1.24644 1.25365 0.90631 0.87776 0.91723 0.80946 0.76592 0.84640 0.80912 0.74960 0.97160 0.97684 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 10.45 71.23 0.74 -0.68 16 2 C 0.04 1.24 7.22 43.10 0.31 1.55 16 3 C -0.28 -6.44 10.74 21.99 0.24 -6.20 16 4 C 0.06 1.22 11.45 83.54 0.96 2.18 16 5 N -0.37 -10.71 3.40 -351.79 -1.20 -11.91 16 6 C 0.12 2.89 6.99 85.63 0.60 3.48 16 7 C 0.48 17.89 7.86 87.66 0.69 18.58 16 8 O -0.58 -28.04 15.71 -3.03 -0.05 -28.09 16 9 N -0.70 -26.88 5.55 -466.79 -2.59 -29.47 16 10 C 0.23 11.53 4.50 85.63 0.38 11.92 16 11 C -0.55 -29.80 9.83 25.60 0.25 -29.55 16 12 H 0.07 3.69 7.84 -2.91 -0.02 3.67 16 13 C 0.03 1.70 5.47 84.66 0.46 2.17 16 14 N -0.93 -55.03 13.96 21.45 0.30 -54.73 16 15 Si 0.93 44.61 27.47 68.60 1.88 46.49 16 16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.27 -12.77 6.54 99.48 0.65 -12.11 16 19 N -0.33 -11.70 11.64 -47.39 -0.55 -12.25 16 20 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 21 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 24 H 0.22 2.34 8.06 -2.91 -0.02 2.31 16 25 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.17 2.25 8.07 -2.39 -0.02 2.23 16 27 H 0.41 12.99 8.32 -92.71 -0.77 12.22 16 28 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 29 H 0.01 0.27 7.57 -2.38 -0.02 0.26 16 30 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -79.68 268.97 2.75 -76.93 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.32 Total: 9.58 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 4.63 Total: 3.45 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -4.04 Total: -108.36 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.09 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -79.68 2.75 -76.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070688055.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.258 kcal (2) G-P(sol) polarization free energy of solvation -79.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds