Wall clock time and date at job start Mon Mar 30 2020 03:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86801 * 120.00172 * 2 1 4 4 H 1.48503 * 109.46955 * 269.99718 * 3 2 1 5 5 H 1.48496 * 109.47134 * 29.99843 * 3 2 1 6 6 H 1.48503 * 109.46929 * 150.00017 * 3 2 1 7 7 C 1.40271 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99664 * 180.02562 * 7 2 1 9 9 C 1.40370 * 119.99996 * 359.97438 * 7 2 1 10 10 N 1.33069 * 126.31785 * 180.02562 * 9 7 2 11 11 C 1.32220 * 109.80052 * 179.97438 * 10 9 7 12 12 C 1.50706 * 125.15683 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.51993 * 359.89239 * 12 11 10 14 14 C 1.53177 * 109.52265 * 239.70409 * 12 11 10 15 15 C 1.53182 * 109.03440 * 183.11316 * 14 12 11 16 16 C 1.53096 * 109.16324 * 56.97923 * 15 14 12 17 17 O 1.42906 * 109.41675 * 302.39151 * 16 15 14 18 18 C 1.42903 * 114.09412 * 61.15534 * 17 16 15 19 19 N 1.31391 * 109.68926 * 359.97438 * 11 10 9 20 20 N 1.37028 * 126.31873 * 0.02850 * 9 7 2 21 21 H 0.96996 * 127.01127 * 0.26138 * 20 9 7 22 22 H 0.97004 * 119.99449 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.54210 * 302.97419 * 14 12 11 24 24 H 1.08994 * 109.54445 * 63.24952 * 14 12 11 25 25 H 1.08998 * 109.52077 * 297.07790 * 15 14 12 26 26 H 1.09001 * 109.57272 * 176.91299 * 15 14 12 27 27 H 1.08996 * 109.48230 * 182.40724 * 16 15 14 28 28 H 1.09001 * 109.47826 * 62.37303 * 16 15 14 29 29 H 1.09006 * 109.47738 * 178.86080 * 18 17 16 30 30 H 1.09002 * 109.48128 * 58.82725 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4881 2.0463 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5381 1.4401 0.7001 7 6 2.0077 -1.2148 -0.0005 8 1 3.0878 -1.2148 -0.0001 9 6 1.3058 -2.4304 -0.0005 10 7 1.8403 -3.6491 -0.0005 11 6 0.8809 -4.5589 0.0000 12 6 1.0990 -6.0501 -0.0004 13 1 2.1682 -6.2617 -0.0031 14 6 0.4516 -6.6618 -1.2465 15 6 0.6120 -8.1844 -1.1965 16 6 -0.0084 -8.7128 0.0995 17 8 0.6175 -8.0809 1.2180 18 6 0.4597 -6.6609 1.2494 19 7 -0.2916 -3.9658 0.0009 20 7 -0.0561 -2.5812 -0.0006 21 1 -0.7217 -1.8756 -0.0042 22 1 -0.4849 0.8401 -0.0004 23 1 -0.6081 -6.4074 -1.2690 24 1 0.9405 -6.2728 -2.1396 25 1 1.6712 -8.4401 -1.2239 26 1 0.1066 -8.6331 -2.0517 27 1 0.1406 -9.7908 0.1607 28 1 -1.0759 -8.4922 0.1077 29 1 0.9461 -6.2608 2.1391 30 1 -0.6016 -6.4135 1.2727 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083722851.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:52 Heat of formation + Delta-G solvation = 1.368422 kcal Electronic energy + Delta-G solvation = -15076.478425 eV Core-core repulsion = 12486.051172 eV Total energy + Delta-G solvation = -2590.427254 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.01033 -38.72887 -34.27919 -33.38288 -31.51034 -30.14577 -28.89344 -25.97613 -24.68964 -23.60560 -21.08231 -19.87597 -18.55108 -17.72792 -15.83948 -15.74586 -15.41499 -15.03560 -14.43667 -14.07754 -13.63662 -13.23689 -12.92022 -12.42766 -12.23421 -11.58348 -11.48272 -11.43623 -11.07847 -10.76230 -10.64800 -10.35610 -10.09165 -9.88228 -9.66951 -9.22753 -8.24974 -8.22757 -7.98969 -7.17724 -4.91396 2.81163 2.95809 3.02369 3.42670 3.74137 4.07834 4.16202 4.69216 5.07378 5.13005 5.14950 5.23082 5.45727 5.58104 5.66398 5.76111 5.93513 6.02187 6.10933 6.22441 6.26211 6.54531 6.60630 6.92041 6.95656 7.42857 7.58461 8.02487 8.17799 8.44700 8.51676 9.35969 9.88264 10.10520 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.075566 B = 0.005982 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.445891 B = 4679.240185 C = 4719.133168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.073 3.927 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.427 4.427 8 H 0.103 0.897 9 C 0.410 3.590 10 N -0.628 5.628 11 C 0.216 3.784 12 C -0.015 4.015 13 H 0.090 0.910 14 C -0.110 4.110 15 C -0.154 4.154 16 C 0.060 3.940 17 O -0.386 6.386 18 C 0.074 3.926 19 N -0.404 5.404 20 N -0.507 5.507 21 H 0.439 0.561 22 H 0.293 0.707 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.651 -6.887 -0.980 6.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.144 4.144 3 Si 0.768 3.232 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.468 4.468 8 H 0.121 0.879 9 C 0.156 3.844 10 N -0.367 5.367 11 C -0.068 4.068 12 C -0.037 4.037 13 H 0.109 0.891 14 C -0.148 4.148 15 C -0.191 4.191 16 C -0.017 4.017 17 O -0.304 6.304 18 C -0.003 4.003 19 N -0.240 5.240 20 N -0.233 5.233 21 H 0.294 0.706 22 H 0.104 0.896 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.074 -7.336 -0.829 7.460 hybrid contribution -0.259 1.679 -0.313 1.727 sum -1.333 -5.657 -1.141 5.923 Atomic orbital electron populations 1.68748 1.08045 1.30715 1.39331 1.26064 0.94913 1.02437 0.91032 0.85691 0.79920 0.78144 0.79406 1.19122 1.20042 1.18116 1.18685 0.95477 0.86367 1.46285 0.87900 1.20799 0.81230 0.92801 0.89527 1.70713 1.32218 0.97616 1.36107 1.23081 0.88112 0.95350 1.00234 1.19824 1.01324 0.86955 0.95564 0.89125 1.21571 1.01635 0.93783 0.97824 1.22206 1.02093 0.96649 0.98198 1.22549 0.96110 0.97060 0.86007 1.87898 1.76983 1.20171 1.45359 1.22582 1.00363 0.79509 0.97849 1.77533 1.22470 0.89412 1.34598 1.48672 1.08029 1.04173 1.62424 0.70647 0.89554 0.91230 0.91562 0.91094 0.91145 0.89359 0.93340 0.88886 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.17 10.72 55.56 0.60 -19.57 16 2 C 0.07 1.73 5.50 -17.29 -0.10 1.64 16 3 Si 0.94 17.86 29.56 -169.99 -5.03 12.83 16 4 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 7 C -0.43 -11.29 9.47 -38.02 -0.36 -11.65 16 8 H 0.10 2.62 7.85 -52.49 -0.41 2.21 16 9 C 0.41 11.56 7.67 -155.87 -1.20 10.36 16 10 N -0.63 -17.37 11.24 -10.11 -0.11 -17.48 16 11 C 0.22 5.37 6.60 -157.17 -1.04 4.33 16 12 C -0.02 -0.30 2.86 -91.63 -0.26 -0.56 16 13 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 14 C -0.11 -1.85 5.29 -26.55 -0.14 -1.99 16 15 C -0.15 -2.01 6.14 -26.59 -0.16 -2.18 16 16 C 0.06 0.78 6.84 37.21 0.25 1.03 16 17 O -0.39 -6.29 10.77 -35.23 -0.38 -6.67 16 18 C 0.07 1.33 6.11 37.20 0.23 1.56 16 19 N -0.40 -10.51 12.80 32.35 0.41 -10.09 16 20 N -0.51 -13.82 7.16 31.11 0.22 -13.60 16 21 H 0.44 11.64 6.38 -182.33 -1.16 10.48 16 22 H 0.29 6.34 8.29 -40.82 -0.34 6.00 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 255.86 15.07 3.86 3.86 Total: -1.00 -29.09 255.86 -7.72 -36.81 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -4.51 Total: 11.37 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -2.77 Total: 2.55 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 1.12 Total: -60.74 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.38 Total: -6.67 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.09 -7.72 -36.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083722851.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.176 kcal (2) G-P(sol) polarization free energy of solvation -29.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds