Wall clock time and date at job start Mon Mar 30 2020 03:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86801 * 120.00172 * 2 1 4 4 H 1.48503 * 109.46955 * 269.99718 * 3 2 1 5 5 H 1.48496 * 109.47134 * 29.99843 * 3 2 1 6 6 H 1.48503 * 109.46929 * 150.00017 * 3 2 1 7 7 C 1.40271 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99664 * 180.02562 * 7 2 1 9 9 C 1.40370 * 119.99996 * 359.97438 * 7 2 1 10 10 N 1.33069 * 126.31785 * 180.02562 * 9 7 2 11 11 C 1.32220 * 109.80052 * 179.97438 * 10 9 7 12 12 C 1.50706 * 125.15683 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.51993 * 359.89239 * 12 11 10 14 14 C 1.53177 * 109.52265 * 239.70409 * 12 11 10 15 15 C 1.53182 * 109.03440 * 183.11316 * 14 12 11 16 16 C 1.53096 * 109.16324 * 56.97923 * 15 14 12 17 17 O 1.42906 * 109.41675 * 302.39151 * 16 15 14 18 18 C 1.42903 * 114.09412 * 61.15534 * 17 16 15 19 19 N 1.31391 * 109.68926 * 359.97438 * 11 10 9 20 20 N 1.37028 * 126.31873 * 0.02850 * 9 7 2 21 21 H 0.96996 * 127.01127 * 0.26138 * 20 9 7 22 22 H 0.97004 * 119.99449 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.54210 * 302.97419 * 14 12 11 24 24 H 1.08994 * 109.54445 * 63.24952 * 14 12 11 25 25 H 1.08998 * 109.52077 * 297.07790 * 15 14 12 26 26 H 1.09001 * 109.57272 * 176.91299 * 15 14 12 27 27 H 1.08996 * 109.48230 * 182.40724 * 16 15 14 28 28 H 1.09001 * 109.47826 * 62.37303 * 16 15 14 29 29 H 1.09006 * 109.47738 * 178.86080 * 18 17 16 30 30 H 1.09002 * 109.48128 * 58.82725 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4881 2.0463 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5381 1.4401 0.7001 7 6 2.0077 -1.2148 -0.0005 8 1 3.0878 -1.2148 -0.0001 9 6 1.3058 -2.4304 -0.0005 10 7 1.8403 -3.6491 -0.0005 11 6 0.8809 -4.5589 0.0000 12 6 1.0990 -6.0501 -0.0004 13 1 2.1682 -6.2617 -0.0031 14 6 0.4516 -6.6618 -1.2465 15 6 0.6120 -8.1844 -1.1965 16 6 -0.0084 -8.7128 0.0995 17 8 0.6175 -8.0809 1.2180 18 6 0.4597 -6.6609 1.2494 19 7 -0.2916 -3.9658 0.0009 20 7 -0.0561 -2.5812 -0.0006 21 1 -0.7217 -1.8756 -0.0042 22 1 -0.4849 0.8401 -0.0004 23 1 -0.6081 -6.4074 -1.2690 24 1 0.9405 -6.2728 -2.1396 25 1 1.6712 -8.4401 -1.2239 26 1 0.1066 -8.6331 -2.0517 27 1 0.1406 -9.7908 0.1607 28 1 -1.0759 -8.4922 0.1077 29 1 0.9461 -6.2608 2.1391 30 1 -0.6016 -6.4135 1.2727 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083722851.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:50 Heat of formation + Delta-G solvation = -18.132863 kcal Electronic energy + Delta-G solvation = -15077.324065 eV Core-core repulsion = 12486.051172 eV Total energy + Delta-G solvation = -2591.272893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 3.56 seconds Orbital eigenvalues (eV) -41.94056 -40.09826 -36.09764 -34.89450 -32.93171 -32.16061 -30.70094 -27.93901 -25.98072 -25.08363 -22.85079 -21.40591 -20.34632 -19.69398 -17.47859 -17.10486 -17.06026 -16.69102 -15.80866 -15.59259 -15.27637 -14.95911 -14.46563 -13.90609 -13.55335 -13.45573 -13.18371 -13.01192 -12.43835 -12.15657 -12.08146 -11.88559 -11.72955 -11.45314 -11.29536 -10.61303 -10.29409 -10.26951 -9.94927 -9.02415 -6.93691 1.13377 1.40705 1.58028 1.64041 2.15115 2.26510 2.67290 2.93001 3.23059 3.63641 3.79625 3.96507 4.04806 4.20430 4.30771 4.50743 4.62449 4.72417 4.75395 4.94658 5.03593 5.04661 5.06632 5.17974 5.38100 5.58619 6.00730 6.17893 6.20808 6.48780 6.55418 7.30190 7.99554 8.13408 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.075566 B = 0.005982 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.445891 B = 4679.240185 C = 4719.133168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.038 3.962 3 Si 1.024 2.976 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.255 1.255 7 C -0.457 4.457 8 H 0.103 0.897 9 C 0.382 3.618 10 N -0.661 5.661 11 C 0.217 3.783 12 C -0.017 4.017 13 H 0.088 0.912 14 C -0.105 4.105 15 C -0.143 4.143 16 C 0.051 3.949 17 O -0.391 6.391 18 C 0.088 3.912 19 N -0.420 5.420 20 N -0.521 5.521 21 H 0.437 0.563 22 H 0.307 0.693 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.484 -6.941 -1.302 7.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.178 4.178 3 Si 0.842 3.158 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.179 1.179 7 C -0.498 4.498 8 H 0.121 0.879 9 C 0.130 3.870 10 N -0.400 5.400 11 C -0.067 4.067 12 C -0.038 4.038 13 H 0.106 0.894 14 C -0.144 4.144 15 C -0.181 4.181 16 C -0.025 4.025 17 O -0.310 6.310 18 C 0.010 3.990 19 N -0.256 5.256 20 N -0.247 5.247 21 H 0.291 0.709 22 H 0.119 0.881 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.141 0.859 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.942 -7.425 -1.153 7.572 hybrid contribution -0.354 1.694 -0.232 1.747 sum -1.296 -5.730 -1.385 6.036 Atomic orbital electron populations 1.68744 1.09388 1.32626 1.37356 1.27129 0.95762 1.05530 0.89351 0.84551 0.78441 0.72946 0.79850 1.18191 1.18484 1.17856 1.19048 0.95813 0.87175 1.47784 0.87900 1.21333 0.81860 0.93711 0.90143 1.70732 1.33276 0.98179 1.37802 1.23973 0.87245 0.97296 0.98144 1.20032 1.01690 0.84060 0.98026 0.89413 1.21535 1.00379 0.96676 0.95793 1.22177 1.03016 0.93346 0.99551 1.22886 0.96267 0.98613 0.84746 1.87898 1.77481 1.18654 1.46957 1.22292 0.99470 0.80765 0.96507 1.77474 1.23138 0.89062 1.35879 1.48666 1.07756 1.04618 1.63693 0.70865 0.88066 0.92253 0.92545 0.90488 0.88105 0.85907 0.92727 0.89776 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -40.70 10.72 21.88 0.23 -40.47 16 2 C 0.04 1.78 5.50 85.36 0.47 2.25 16 3 Si 1.02 35.27 29.56 68.60 2.03 37.29 16 4 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 5 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 6 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 7 C -0.46 -24.60 9.47 23.28 0.22 -24.38 16 8 H 0.10 5.35 7.85 -2.91 -0.02 5.33 16 9 C 0.38 22.15 7.67 133.83 1.03 23.18 16 10 N -0.66 -37.70 11.24 -185.91 -2.09 -39.79 16 11 C 0.22 11.09 6.60 138.74 0.92 12.00 16 12 C -0.02 -0.66 2.86 -11.45 -0.03 -0.69 16 13 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 14 C -0.11 -3.48 5.29 30.71 0.16 -3.32 16 15 C -0.14 -3.37 6.14 30.69 0.19 -3.18 16 16 C 0.05 1.18 6.84 72.01 0.49 1.67 16 17 O -0.39 -12.11 10.77 -148.98 -1.60 -13.71 16 18 C 0.09 3.13 6.11 72.01 0.44 3.57 16 19 N -0.42 -22.46 12.80 -51.55 -0.66 -23.12 16 20 N -0.52 -29.27 7.16 -55.50 -0.40 -29.67 16 21 H 0.44 23.84 6.38 -213.09 -1.36 22.48 16 22 H 0.31 12.91 8.29 -92.71 -0.77 12.14 16 23 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 26 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -63.81 255.86 1.19 -62.62 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -0.21 Total: 35.73 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 3.88 Total: 11.12 kcal Atomic # 7 Polarization: -130.14 SS G_CDS: -2.91 Total: -133.05 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -1.60 Total: -13.71 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.29 kcal Total: -63.81 1.19 -62.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083722851.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.489 kcal (2) G-P(sol) polarization free energy of solvation -63.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds