Wall clock time and date at job start Mon Mar 30 2020 03:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.86833 * 2 1 4 4 N 1.31395 * 125.16074 * 244.01582 * 3 2 1 5 5 N 1.40461 * 107.18159 * 179.72853 * 4 3 2 6 6 H 0.96996 * 127.01785 * 180.27004 * 5 4 3 7 7 C 1.37021 * 105.96740 * 0.40502 * 5 4 3 8 8 C 1.40372 * 126.31885 * 179.85343 * 7 5 4 9 9 H 1.07999 * 120.00271 * 196.39932 * 8 7 5 10 10 C 1.40271 * 119.99430 * 16.40514 * 8 7 5 11 11 N 1.30646 * 119.99344 * 169.66202 * 10 8 7 12 12 Si 1.86797 * 120.00344 * 349.65674 * 10 8 7 13 13 H 1.48497 * 109.47204 * 180.02562 * 12 10 8 14 14 H 1.48502 * 109.46918 * 300.00407 * 12 10 8 15 15 H 1.48502 * 109.46918 * 60.00105 * 12 10 8 16 16 N 1.32230 * 125.15688 * 63.99955 * 3 2 1 17 17 C 1.54104 * 109.87602 * 238.99683 * 2 1 3 18 18 C 1.54808 * 104.18888 * 242.45364 * 17 2 1 19 19 C 1.55000 * 102.09066 * 20.88201 * 18 17 2 20 20 O 1.43739 * 110.00423 * 121.09061 * 2 1 3 21 21 H 1.08999 * 109.47348 * 60.69387 * 1 2 3 22 22 H 1.09005 * 109.47317 * 180.69940 * 1 2 3 23 23 H 1.08999 * 109.47345 * 300.69668 * 1 2 3 24 24 H 0.96997 * 120.00471 * 354.43308 * 11 10 8 25 25 H 1.08998 * 110.48577 * 1.13310 * 17 2 1 26 26 H 1.09003 * 110.48359 * 123.77702 * 17 2 1 27 27 H 1.09000 * 110.90703 * 139.07936 * 18 17 2 28 28 H 1.09001 * 110.90611 * 262.68515 * 18 17 2 29 29 H 1.08993 * 110.61710 * 81.47572 * 19 18 17 30 30 H 1.08998 * 110.61542 * 204.47704 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0421 1.4173 0.0000 4 7 2.7419 1.9689 -0.9656 5 7 3.0119 3.2919 -0.5787 6 1 3.5068 3.9579 -1.0811 7 6 2.4362 3.4489 0.6548 8 6 2.4515 4.6142 1.4372 9 1 2.2063 4.5626 2.4877 10 6 2.7851 5.8458 0.8545 11 7 2.6060 6.9542 1.5225 12 14 3.4855 5.9010 -0.8763 13 1 3.7531 7.3111 -1.2573 14 1 4.7522 5.1273 -0.9226 15 1 2.5085 5.3083 -1.8248 16 7 1.8552 2.2944 0.9717 17 6 2.0539 -0.7465 -1.2422 18 6 2.8356 -1.9494 -0.6604 19 6 2.2333 -2.0703 0.7627 20 8 2.0217 -0.6975 1.1567 21 1 -0.3634 0.5030 -0.8961 22 1 -0.3634 -1.0276 0.0125 23 1 -0.3634 0.5246 0.8836 24 1 2.1684 6.9337 2.3879 25 1 1.2235 -1.0927 -1.8576 26 1 2.7174 -0.1043 -1.8214 27 1 2.6475 -2.8528 -1.2405 28 1 3.9031 -1.7337 -0.6139 29 1 1.2878 -2.6116 0.7345 30 1 2.9367 -2.5590 1.4368 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087229469.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:19 Heat of formation + Delta-G solvation = 32.191498 kcal Electronic energy + Delta-G solvation = -15428.802743 eV Core-core repulsion = 12839.712078 eV Total energy + Delta-G solvation = -2589.090665 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41932 -38.99129 -34.05297 -32.44832 -31.64754 -30.30529 -29.74036 -26.33927 -25.35896 -22.56540 -21.52124 -20.22446 -18.72429 -18.45348 -16.81473 -15.84479 -15.59612 -14.66485 -13.92609 -13.62731 -13.53188 -13.45618 -12.92517 -12.77154 -12.20846 -11.75298 -11.44630 -11.37863 -10.97680 -10.70563 -10.63916 -10.33775 -10.28365 -9.97832 -9.52237 -9.42916 -8.65340 -8.34459 -8.29363 -7.54618 -4.96692 2.69250 2.83579 2.99252 3.10361 3.68035 3.84737 4.06788 4.38246 4.81831 4.98940 5.07659 5.09568 5.21942 5.45128 5.55837 5.81079 5.88434 5.94518 6.05065 6.12562 6.21643 6.39066 6.52324 6.71006 7.11409 7.31105 7.36265 7.69057 7.97802 8.15071 8.34468 8.75250 9.75228 9.82724 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.051996 B = 0.008070 C = 0.007558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.372674 B = 3468.972289 C = 3704.006181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.204 3.796 3 C 0.238 3.762 4 N -0.392 5.392 5 N -0.561 5.561 6 H 0.405 0.595 7 C 0.403 3.597 8 C -0.488 4.488 9 H 0.103 0.897 10 C 0.049 3.951 11 N -0.802 5.802 12 Si 1.036 2.964 13 H -0.263 1.263 14 H -0.265 1.265 15 H -0.261 1.261 16 N -0.603 5.603 17 C -0.146 4.146 18 C -0.153 4.153 19 C 0.042 3.958 20 O -0.352 6.352 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.294 0.706 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 -10.735 -5.244 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.162 3.838 3 C -0.046 4.046 4 N -0.228 5.228 5 N -0.291 5.291 6 H 0.257 0.743 7 C 0.154 3.846 8 C -0.531 4.531 9 H 0.121 0.879 10 C -0.174 4.174 11 N -0.427 5.427 12 Si 0.864 3.136 13 H -0.189 1.189 14 H -0.193 1.193 15 H -0.187 1.187 16 N -0.340 5.340 17 C -0.185 4.185 18 C -0.191 4.191 19 C -0.035 4.035 20 O -0.270 6.270 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.092 0.908 24 H 0.106 0.894 25 H 0.094 0.906 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.046 -10.046 -6.427 11.926 hybrid contribution -0.289 -0.393 0.893 1.018 sum -0.334 -10.439 -5.534 11.820 Atomic orbital electron populations 1.22116 0.93823 1.01530 1.03441 1.19870 0.93059 0.85501 0.85343 1.23061 0.95869 0.95392 0.90254 1.77536 1.28007 0.91688 1.25546 1.48951 1.50570 1.10559 1.19017 0.74313 1.21188 0.87271 0.93731 0.82414 1.19685 1.45628 0.89199 0.98588 0.87882 1.26924 0.93457 0.91364 1.05679 1.70411 1.28796 1.28854 1.14664 0.84179 0.77657 0.77719 0.74068 1.18866 1.19312 1.18733 1.70798 1.32566 1.00727 1.29912 1.23043 1.00863 0.96880 0.97674 1.23117 1.00969 0.98366 0.96641 1.23543 0.99402 0.85125 0.95402 1.89058 1.85903 1.19611 1.32380 0.91796 0.92347 0.90781 0.89419 0.90634 0.88384 0.90550 0.90665 0.92414 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.60 37.15 0.32 -2.28 16 2 C 0.20 4.04 1.15 -91.20 -0.11 3.93 16 3 C 0.24 5.95 6.74 -157.16 -1.06 4.89 16 4 N -0.39 -9.91 11.24 32.35 0.36 -9.54 16 5 N -0.56 -14.63 6.38 31.11 0.20 -14.43 16 6 H 0.41 9.63 3.09 -182.33 -0.56 9.07 16 7 C 0.40 11.24 7.39 -155.87 -1.15 10.09 16 8 C -0.49 -13.48 9.89 -38.02 -0.38 -13.85 16 9 H 0.10 2.94 8.06 -52.49 -0.42 2.52 16 10 C 0.05 1.26 5.52 -17.29 -0.10 1.17 16 11 N -0.80 -20.67 13.64 55.56 0.76 -19.91 16 12 Si 1.04 22.13 24.93 -169.99 -4.24 17.89 16 13 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 14 H -0.27 -5.37 6.76 56.52 0.38 -4.98 16 15 H -0.26 -5.52 6.87 56.52 0.39 -5.13 16 16 N -0.60 -16.83 11.24 -10.11 -0.11 -16.94 16 17 C -0.15 -2.35 6.24 -25.20 -0.16 -2.50 16 18 C -0.15 -2.03 7.15 -24.72 -0.18 -2.21 16 19 C 0.04 0.60 7.67 38.21 0.29 0.89 16 20 O -0.35 -7.04 10.84 -35.23 -0.38 -7.42 16 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 24 H 0.29 7.37 8.73 -40.82 -0.36 7.01 16 25 H 0.07 1.01 7.70 -51.93 -0.40 0.61 16 26 H 0.10 1.76 6.58 -51.93 -0.34 1.42 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 250.50 15.07 3.77 3.77 Total: -1.00 -30.95 250.50 -6.02 -36.97 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -3.87 Total: 9.50 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.51 Total: 0.12 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: 1.21 Total: -60.83 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.38 Total: -7.42 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.24 Total: 17.89 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.95 -6.02 -36.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087229469.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.162 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds