Wall clock time and date at job start Mon Mar 30 2020 03:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.86833 * 2 1 4 4 N 1.31395 * 125.16074 * 244.01582 * 3 2 1 5 5 N 1.40461 * 107.18159 * 179.72853 * 4 3 2 6 6 H 0.96996 * 127.01785 * 180.27004 * 5 4 3 7 7 C 1.37021 * 105.96740 * 0.40502 * 5 4 3 8 8 C 1.40372 * 126.31885 * 179.85343 * 7 5 4 9 9 H 1.07999 * 120.00271 * 196.39932 * 8 7 5 10 10 C 1.40271 * 119.99430 * 16.40514 * 8 7 5 11 11 N 1.30646 * 119.99344 * 169.66202 * 10 8 7 12 12 Si 1.86797 * 120.00344 * 349.65674 * 10 8 7 13 13 H 1.48497 * 109.47204 * 180.02562 * 12 10 8 14 14 H 1.48502 * 109.46918 * 300.00407 * 12 10 8 15 15 H 1.48502 * 109.46918 * 60.00105 * 12 10 8 16 16 N 1.32230 * 125.15688 * 63.99955 * 3 2 1 17 17 C 1.54104 * 109.87602 * 238.99683 * 2 1 3 18 18 C 1.54808 * 104.18888 * 242.45364 * 17 2 1 19 19 C 1.55000 * 102.09066 * 20.88201 * 18 17 2 20 20 O 1.43739 * 110.00423 * 121.09061 * 2 1 3 21 21 H 1.08999 * 109.47348 * 60.69387 * 1 2 3 22 22 H 1.09005 * 109.47317 * 180.69940 * 1 2 3 23 23 H 1.08999 * 109.47345 * 300.69668 * 1 2 3 24 24 H 0.96997 * 120.00471 * 354.43308 * 11 10 8 25 25 H 1.08998 * 110.48577 * 1.13310 * 17 2 1 26 26 H 1.09003 * 110.48359 * 123.77702 * 17 2 1 27 27 H 1.09000 * 110.90703 * 139.07936 * 18 17 2 28 28 H 1.09001 * 110.90611 * 262.68515 * 18 17 2 29 29 H 1.08993 * 110.61710 * 81.47572 * 19 18 17 30 30 H 1.08998 * 110.61542 * 204.47704 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0421 1.4173 0.0000 4 7 2.7419 1.9689 -0.9656 5 7 3.0119 3.2919 -0.5787 6 1 3.5068 3.9579 -1.0811 7 6 2.4362 3.4489 0.6548 8 6 2.4515 4.6142 1.4372 9 1 2.2063 4.5626 2.4877 10 6 2.7851 5.8458 0.8545 11 7 2.6060 6.9542 1.5225 12 14 3.4855 5.9010 -0.8763 13 1 3.7531 7.3111 -1.2573 14 1 4.7522 5.1273 -0.9226 15 1 2.5085 5.3083 -1.8248 16 7 1.8552 2.2944 0.9717 17 6 2.0539 -0.7465 -1.2422 18 6 2.8356 -1.9494 -0.6604 19 6 2.2333 -2.0703 0.7627 20 8 2.0217 -0.6975 1.1567 21 1 -0.3634 0.5030 -0.8961 22 1 -0.3634 -1.0276 0.0125 23 1 -0.3634 0.5246 0.8836 24 1 2.1684 6.9337 2.3879 25 1 1.2235 -1.0927 -1.8576 26 1 2.7174 -0.1043 -1.8214 27 1 2.6475 -2.8528 -1.2405 28 1 3.9031 -1.7337 -0.6139 29 1 1.2878 -2.6116 0.7345 30 1 2.9367 -2.5590 1.4368 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087229469.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:18 Heat of formation + Delta-G solvation = 9.823397 kcal Electronic energy + Delta-G solvation = -15429.772697 eV Core-core repulsion = 12839.712078 eV Total energy + Delta-G solvation = -2590.060619 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.33636 -40.40865 -36.05507 -34.07322 -33.07584 -32.16158 -31.47394 -28.00434 -26.97952 -24.28222 -22.73806 -21.98332 -20.66266 -20.25179 -18.75647 -17.26055 -16.90086 -16.29344 -15.70516 -15.38458 -15.26459 -14.91830 -14.74626 -14.22212 -13.51671 -13.20748 -12.97618 -12.78312 -12.52947 -12.15598 -11.98385 -11.93681 -11.85101 -11.59958 -11.47047 -10.80259 -10.61569 -10.36529 -10.33349 -9.61695 -7.09393 0.81557 1.09062 1.27779 1.33408 1.90227 2.03110 2.15316 2.84287 3.09238 3.37958 3.68573 3.86616 4.11365 4.23122 4.37971 4.51181 4.64289 4.74716 4.81285 4.88229 4.96529 5.08750 5.14109 5.22256 5.25728 5.35469 5.62145 5.91165 6.04066 6.14085 6.29446 6.70513 7.72428 7.76724 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.051996 B = 0.008070 C = 0.007558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.372674 B = 3468.972289 C = 3704.006181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.194 3.806 3 C 0.231 3.769 4 N -0.393 5.393 5 N -0.563 5.563 6 H 0.413 0.587 7 C 0.387 3.613 8 C -0.512 4.512 9 H 0.076 0.924 10 C 0.023 3.977 11 N -0.806 5.806 12 Si 1.066 2.934 13 H -0.237 1.237 14 H -0.247 1.247 15 H -0.258 1.258 16 N -0.637 5.637 17 C -0.143 4.143 18 C -0.143 4.143 19 C 0.035 3.965 20 O -0.392 6.392 21 H 0.067 0.933 22 H 0.099 0.901 23 H 0.045 0.955 24 H 0.289 0.711 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 -12.466 -7.081 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.152 3.848 3 C -0.053 4.053 4 N -0.228 5.228 5 N -0.294 5.294 6 H 0.267 0.733 7 C 0.137 3.863 8 C -0.555 4.555 9 H 0.094 0.906 10 C -0.198 4.198 11 N -0.430 5.430 12 Si 0.886 3.114 13 H -0.161 1.161 14 H -0.174 1.174 15 H -0.184 1.184 16 N -0.375 5.375 17 C -0.181 4.181 18 C -0.181 4.181 19 C -0.041 4.041 20 O -0.310 6.310 21 H 0.086 0.914 22 H 0.117 0.883 23 H 0.064 0.936 24 H 0.101 0.899 25 H 0.126 0.874 26 H 0.093 0.907 27 H 0.136 0.864 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.086 -11.778 -8.251 14.381 hybrid contribution -0.355 0.102 1.560 1.603 sum -0.269 -11.676 -6.691 13.460 Atomic orbital electron populations 1.22085 0.92194 1.03767 1.02238 1.20261 0.94292 0.83133 0.87160 1.24176 0.94777 0.97423 0.88912 1.77521 1.28159 0.91311 1.25815 1.49032 1.50536 1.11221 1.18591 0.73282 1.21252 0.87819 0.93908 0.83306 1.19685 1.47446 0.90606 0.97714 0.90563 1.28121 0.92886 0.90245 1.08508 1.70476 1.28853 1.28984 1.14687 0.83821 0.77889 0.79620 0.70020 1.16061 1.17373 1.18417 1.70802 1.33556 1.01564 1.31586 1.23047 1.01825 0.97142 0.96118 1.23115 0.99787 0.98779 0.96404 1.23908 1.01427 0.82628 0.96162 1.89005 1.86215 1.22623 1.33203 0.91434 0.88266 0.93580 0.89916 0.87434 0.90699 0.86407 0.91813 0.89554 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 8.60 71.98 0.62 -4.11 16 2 C 0.19 7.39 1.15 -11.17 -0.01 7.38 16 3 C 0.23 11.55 6.74 138.74 0.94 12.49 16 4 N -0.39 -19.74 11.24 -51.55 -0.58 -20.32 16 5 N -0.56 -29.21 6.38 -55.50 -0.35 -29.57 16 6 H 0.41 19.20 3.09 -213.09 -0.66 18.54 16 7 C 0.39 22.05 7.39 133.83 0.99 23.04 16 8 C -0.51 -29.19 9.89 23.28 0.23 -28.96 16 9 H 0.08 4.61 8.06 -2.91 -0.02 4.59 16 10 C 0.02 1.17 5.52 85.36 0.47 1.64 16 11 N -0.81 -41.76 13.64 21.88 0.30 -41.46 16 12 Si 1.07 43.36 24.93 68.60 1.71 45.07 16 13 H -0.24 -8.67 7.11 99.48 0.71 -7.96 16 14 H -0.25 -9.33 6.76 99.48 0.67 -8.66 16 15 H -0.26 -10.40 6.87 99.48 0.68 -9.71 16 16 N -0.64 -36.43 11.24 -185.91 -2.09 -38.52 16 17 C -0.14 -4.19 6.24 31.58 0.20 -3.99 16 18 C -0.14 -3.28 7.15 31.90 0.23 -3.05 16 19 C 0.03 0.86 7.67 72.67 0.56 1.42 16 20 O -0.39 -15.21 10.84 -148.98 -1.62 -16.83 16 21 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 23 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.29 14.87 8.73 -92.71 -0.81 14.06 16 25 H 0.11 2.42 7.70 -2.39 -0.02 2.40 16 26 H 0.07 2.55 6.58 -2.39 -0.02 2.54 16 27 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -68.68 250.50 1.99 -66.70 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.40 Total: 29.10 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 4.22 Total: 5.84 kcal Atomic # 7 Polarization: -127.14 SS G_CDS: -2.72 Total: -129.87 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -1.62 Total: -16.83 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.71 Total: 45.07 kcal Total: -68.68 1.99 -66.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087229469.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.520 kcal (2) G-P(sol) polarization free energy of solvation -68.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds