Wall clock time and date at job start Mon Mar 30 2020 03:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35999 * 116.99765 * 2 1 4 4 C 1.38563 * 120.07024 * 359.97438 * 3 2 1 5 5 C 1.38241 * 119.99765 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.14765 * 359.97368 * 5 4 3 7 7 C 1.50698 * 119.92913 * 179.74930 * 6 5 4 8 8 H 1.09002 * 109.47228 * 199.99672 * 7 6 5 9 9 N 1.46900 * 109.46910 * 320.00109 * 7 6 5 10 10 C 1.50702 * 109.47183 * 79.99987 * 7 6 5 11 11 H 1.07999 * 120.00001 * 0.02562 * 10 7 6 12 12 C 1.37878 * 120.00148 * 179.97438 * 10 7 6 13 13 N 1.31516 * 119.99989 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 120.00071 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47245 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47052 * 119.99919 * 14 12 10 17 17 H 1.48493 * 109.47236 * 240.00244 * 14 12 10 18 18 C 1.38247 * 120.14468 * 0.02562 * 6 5 4 19 19 C 1.38558 * 119.99917 * 359.97438 * 18 6 5 20 20 O 1.35995 * 120.07405 * 180.02562 * 19 18 6 21 21 H 1.09008 * 109.46996 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47596 * 299.99815 * 1 2 3 23 23 H 1.09004 * 109.47087 * 60.00573 * 1 2 3 24 24 H 1.07998 * 120.00286 * 0.04338 * 4 3 2 25 25 H 1.08004 * 119.92819 * 179.97438 * 5 4 3 26 26 H 1.00896 * 110.99875 * 296.04170 * 9 7 6 27 27 H 1.00900 * 110.99940 * 60.00071 * 9 7 6 28 28 H 0.96992 * 120.00122 * 179.97438 * 13 12 10 29 29 H 1.07995 * 120.00081 * 179.97438 * 18 6 5 30 30 H 0.96696 * 114.00519 * 269.95573 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2930 2.3748 -0.0005 5 6 1.9222 3.6057 -0.0011 6 6 3.3027 3.6800 -0.0005 7 6 3.9834 5.0244 -0.0068 8 1 5.0093 4.9107 -0.3570 9 7 3.2586 5.9360 -0.9021 10 6 3.9892 5.5911 1.3896 11 1 3.5449 5.0332 2.2006 12 6 4.5628 6.8213 1.6320 13 7 5.1044 7.5004 0.6445 14 14 4.5694 7.5239 3.3628 15 1 3.9020 6.5715 4.2863 16 1 5.9708 7.7405 3.8037 17 1 3.8412 8.8180 3.3744 18 6 4.0602 2.5234 0.0000 19 6 3.4359 1.2865 0.0006 20 8 4.1795 0.1478 0.0016 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 0.2145 2.3196 -0.0002 25 1 1.3339 4.5115 -0.0019 26 1 3.2957 5.6108 -1.8565 27 1 2.3041 6.0580 -0.5985 28 1 5.5075 8.3659 0.8150 29 1 5.1384 2.5841 0.0000 30 1 4.3944 -0.1825 -0.8814 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095672741.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:39 Heat of formation + Delta-G solvation = -52.474852 kcal Electronic energy + Delta-G solvation = -14991.164452 eV Core-core repulsion = 12366.109628 eV Total energy + Delta-G solvation = -2625.054825 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -40.01219 -37.63602 -36.64009 -33.87058 -31.45585 -29.86754 -28.84275 -26.94693 -25.80354 -22.80079 -22.01105 -20.19018 -18.11988 -17.14493 -16.51705 -15.92080 -15.56924 -14.90004 -14.35431 -14.28754 -14.08431 -13.66786 -13.37383 -12.54511 -12.07424 -11.99097 -11.81118 -11.25147 -10.98369 -10.83573 -10.69010 -10.52490 -10.31177 -9.75943 -9.17119 -8.44559 -8.35585 -7.54234 -7.07580 -5.88360 -4.03281 1.68587 1.90047 3.33043 3.41319 3.45460 3.46805 4.12881 4.48031 4.58486 5.04813 5.17854 5.24578 5.36617 5.44795 5.53489 5.82912 5.96463 6.06979 6.24814 6.32089 6.66839 6.85291 7.01732 7.19783 7.49372 7.55730 7.90845 8.07714 8.17815 8.61317 8.98638 9.13881 9.65587 11.15848 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.038480 B = 0.007043 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.467518 B = 3974.850557 C = 4021.325543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.072 3.928 4 C -0.194 4.194 5 C -0.091 4.091 6 C -0.089 4.089 7 C 0.256 3.744 8 H 0.047 0.953 9 N -0.809 5.809 10 C -0.531 4.531 11 H 0.054 0.946 12 C 0.083 3.917 13 N -0.847 5.847 14 Si 0.884 3.116 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.108 4.108 19 C 0.069 3.931 20 O -0.490 6.490 21 H 0.094 0.906 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.298 0.702 27 H 0.317 0.683 28 H 0.255 0.745 29 H 0.132 0.868 30 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -11.039 -3.893 13.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.027 3.973 4 C -0.213 4.213 5 C -0.110 4.110 6 C -0.092 4.092 7 C 0.146 3.854 8 H 0.065 0.935 9 N -0.335 5.335 10 C -0.569 4.569 11 H 0.073 0.927 12 C -0.123 4.123 13 N -0.482 5.482 14 Si 0.712 3.288 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.127 4.127 19 C 0.024 3.976 20 O -0.298 6.298 21 H 0.112 0.888 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.108 0.892 27 H 0.130 0.870 28 H 0.065 0.935 29 H 0.150 0.850 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.646 -10.424 -3.110 12.748 hybrid contribution -0.902 -0.337 0.337 1.021 sum -7.548 -10.762 -2.772 13.434 Atomic orbital electron populations 1.22966 0.79399 1.03205 1.01097 1.86082 1.20477 1.26885 1.89550 1.19286 0.91621 0.84429 1.01924 1.21062 0.99297 0.92186 1.08767 1.20836 0.94790 0.96424 0.98921 1.21655 0.93679 0.98915 0.94937 1.18185 0.92684 0.80919 0.93617 0.93480 1.59209 1.18169 1.53352 1.02731 1.20885 1.40252 1.03931 0.91860 0.92748 1.24951 0.94524 0.96737 0.96121 1.70111 1.35411 1.12520 1.30155 0.86691 0.77683 0.79063 0.85401 1.19873 1.21038 1.21031 1.21247 1.00666 0.90234 1.00525 1.17804 0.85980 0.86364 1.07455 1.84884 1.72099 1.40184 1.32674 0.88790 0.92958 0.93071 0.85973 0.85856 0.89158 0.87042 0.93477 0.85022 0.76822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.95 10.28 -34.24 -0.35 -5.30 16 3 C 0.07 1.26 6.70 -39.12 -0.26 0.99 16 4 C -0.19 -3.22 9.04 -39.46 -0.36 -3.58 16 5 C -0.09 -1.70 9.28 -39.57 -0.37 -2.07 16 6 C -0.09 -1.85 4.88 -104.61 -0.51 -2.36 16 7 C 0.26 6.20 2.85 -70.02 -0.20 6.00 16 8 H 0.05 1.25 8.00 -51.93 -0.42 0.84 16 9 N -0.81 -18.43 8.36 -6.65 -0.06 -18.49 16 10 C -0.53 -14.49 8.70 -34.44 -0.30 -14.79 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 12 C 0.08 2.32 5.39 -17.82 -0.10 2.22 16 13 N -0.85 -24.48 12.77 55.43 0.71 -23.77 16 14 Si 0.88 21.35 29.54 -169.99 -5.02 16.33 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 C -0.11 -2.10 9.60 -39.46 -0.38 -2.48 16 19 C 0.07 1.26 6.72 -39.12 -0.26 0.99 16 20 O -0.49 -8.05 13.29 -34.23 -0.45 -8.50 16 21 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 22 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 23 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 24 H 0.12 1.66 6.30 -52.49 -0.33 1.33 16 25 H 0.12 2.20 6.66 -52.48 -0.35 1.85 16 26 H 0.30 6.04 9.06 -39.29 -0.36 5.69 16 27 H 0.32 6.82 7.33 -39.29 -0.29 6.54 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.13 2.49 8.03 -52.49 -0.42 2.07 16 30 H 0.38 4.27 9.06 45.56 0.41 4.68 16 LS Contribution 262.50 15.07 3.96 3.96 Total: -1.00 -31.72 262.50 -5.47 -37.19 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -2.51 Total: 12.35 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -1.74 Total: -13.76 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.65 Total: -42.26 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.81 Total: -13.80 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.72 -5.47 -37.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095672741.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.287 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.45 seconds