Wall clock time and date at job start Mon Mar 30 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35999 * 116.99765 * 2 1 4 4 C 1.38563 * 120.07024 * 359.97438 * 3 2 1 5 5 C 1.38241 * 119.99765 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.14765 * 359.97368 * 5 4 3 7 7 C 1.50698 * 119.92913 * 179.74930 * 6 5 4 8 8 H 1.09002 * 109.47228 * 199.99672 * 7 6 5 9 9 N 1.46900 * 109.46910 * 320.00109 * 7 6 5 10 10 C 1.50702 * 109.47183 * 79.99987 * 7 6 5 11 11 H 1.07999 * 120.00001 * 0.02562 * 10 7 6 12 12 C 1.37878 * 120.00148 * 179.97438 * 10 7 6 13 13 N 1.31516 * 119.99989 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 120.00071 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47245 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47052 * 119.99919 * 14 12 10 17 17 H 1.48493 * 109.47236 * 240.00244 * 14 12 10 18 18 C 1.38247 * 120.14468 * 0.02562 * 6 5 4 19 19 C 1.38558 * 119.99917 * 359.97438 * 18 6 5 20 20 O 1.35995 * 120.07405 * 180.02562 * 19 18 6 21 21 H 1.09008 * 109.46996 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47596 * 299.99815 * 1 2 3 23 23 H 1.09004 * 109.47087 * 60.00573 * 1 2 3 24 24 H 1.07998 * 120.00286 * 0.04338 * 4 3 2 25 25 H 1.08004 * 119.92819 * 179.97438 * 5 4 3 26 26 H 1.00896 * 110.99875 * 296.04170 * 9 7 6 27 27 H 1.00900 * 110.99940 * 60.00071 * 9 7 6 28 28 H 0.96992 * 120.00122 * 179.97438 * 13 12 10 29 29 H 1.07995 * 120.00081 * 179.97438 * 18 6 5 30 30 H 0.96696 * 114.00519 * 269.95573 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2930 2.3748 -0.0005 5 6 1.9222 3.6057 -0.0011 6 6 3.3027 3.6800 -0.0005 7 6 3.9834 5.0244 -0.0068 8 1 5.0093 4.9107 -0.3570 9 7 3.2586 5.9360 -0.9021 10 6 3.9892 5.5911 1.3896 11 1 3.5449 5.0332 2.2006 12 6 4.5628 6.8213 1.6320 13 7 5.1044 7.5004 0.6445 14 14 4.5694 7.5239 3.3628 15 1 3.9020 6.5715 4.2863 16 1 5.9708 7.7405 3.8037 17 1 3.8412 8.8180 3.3744 18 6 4.0602 2.5234 0.0000 19 6 3.4359 1.2865 0.0006 20 8 4.1795 0.1478 0.0016 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 0.2145 2.3196 -0.0002 25 1 1.3339 4.5115 -0.0019 26 1 3.2957 5.6108 -1.8565 27 1 2.3041 6.0580 -0.5985 28 1 5.5075 8.3659 0.8150 29 1 5.1384 2.5841 0.0000 30 1 4.3944 -0.1825 -0.8814 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095672741.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:38 Heat of formation + Delta-G solvation = -76.846718 kcal Electronic energy + Delta-G solvation = -14992.221296 eV Core-core repulsion = 12366.109628 eV Total energy + Delta-G solvation = -2626.111668 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.33133 -38.92873 -38.06977 -35.62932 -33.42659 -31.30182 -30.17508 -28.24480 -27.60283 -24.48406 -23.39167 -21.77847 -19.40657 -18.60996 -18.34588 -17.33080 -16.84444 -16.51585 -16.08010 -15.82330 -15.51037 -14.87763 -14.85497 -14.41264 -13.66073 -13.46419 -13.05243 -12.87659 -12.68629 -12.58074 -12.12722 -12.03550 -11.84442 -11.46334 -11.12276 -10.55456 -9.77384 -9.07826 -8.76051 -7.97894 -6.19637 0.28700 0.47142 1.41785 1.44373 1.54794 2.35051 2.45889 2.74853 3.24559 3.28146 3.89950 4.07258 4.30210 4.40731 4.41600 4.50776 4.54338 4.68026 4.74246 4.89962 5.25712 5.29514 5.36323 5.74767 5.76610 5.86849 6.18471 6.34502 6.66354 6.89880 7.11969 7.28822 7.52900 9.05097 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.038480 B = 0.007043 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.467518 B = 3974.850557 C = 4021.325543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.077 3.923 4 C -0.184 4.184 5 C -0.095 4.095 6 C -0.111 4.111 7 C 0.262 3.738 8 H 0.012 0.988 9 N -0.818 5.818 10 C -0.543 4.543 11 H 0.043 0.957 12 C 0.036 3.964 13 N -0.879 5.879 14 Si 0.946 3.054 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.279 1.279 18 C -0.122 4.122 19 C 0.066 3.934 20 O -0.498 6.498 21 H 0.122 0.878 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.158 0.842 25 H 0.129 0.871 26 H 0.313 0.687 27 H 0.325 0.675 28 H 0.256 0.744 29 H 0.124 0.876 30 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 -12.212 -3.569 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.032 3.968 4 C -0.202 4.202 5 C -0.113 4.113 6 C -0.114 4.114 7 C 0.152 3.848 8 H 0.029 0.971 9 N -0.346 5.346 10 C -0.581 4.581 11 H 0.061 0.939 12 C -0.167 4.167 13 N -0.515 5.515 14 Si 0.772 3.228 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.204 1.204 18 C -0.141 4.141 19 C 0.021 3.979 20 O -0.310 6.310 21 H 0.140 0.860 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.175 0.825 25 H 0.147 0.853 26 H 0.124 0.876 27 H 0.138 0.862 28 H 0.065 0.935 29 H 0.142 0.858 30 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -8.452 -11.622 -2.800 14.641 hybrid contribution -0.405 -0.138 0.188 0.467 sum -8.857 -11.760 -2.613 14.952 Atomic orbital electron populations 1.23359 0.76684 1.05562 1.02174 1.86080 1.23231 1.25813 1.89091 1.19368 0.91458 0.85460 1.00564 1.21327 1.00995 0.90881 1.07023 1.20897 0.93782 0.97717 0.98930 1.21268 0.94789 0.97396 0.97950 1.17798 0.91598 0.83089 0.92310 0.97051 1.58989 1.18525 1.53610 1.03434 1.21165 1.39805 1.04021 0.93156 0.93852 1.25653 0.94309 0.97177 0.99606 1.70223 1.36431 1.12850 1.32017 0.85718 0.77667 0.78299 0.81089 1.19754 1.20717 1.20447 1.21212 1.00434 0.90876 1.01553 1.17790 0.86831 0.86190 1.07137 1.84812 1.71977 1.39377 1.34785 0.86027 0.92242 0.91489 0.82462 0.85311 0.87617 0.86214 0.93503 0.85786 0.74215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -9.23 10.28 -79.68 -0.82 -10.05 16 3 C 0.08 2.49 6.70 22.57 0.15 2.65 16 4 C -0.18 -5.59 9.04 22.35 0.20 -5.39 16 5 C -0.09 -3.42 9.28 22.27 0.21 -3.21 16 6 C -0.11 -4.67 4.88 -19.86 -0.10 -4.77 16 7 C 0.26 13.07 2.85 43.42 0.12 13.19 16 8 H 0.01 0.65 8.00 -2.39 -0.02 0.63 16 9 N -0.82 -37.76 8.36 -174.95 -1.46 -39.23 16 10 C -0.54 -30.16 8.70 25.60 0.22 -29.94 16 11 H 0.04 2.45 7.74 -2.91 -0.02 2.42 16 12 C 0.04 2.03 5.39 84.65 0.46 2.48 16 13 N -0.88 -51.59 12.77 21.45 0.27 -51.31 16 14 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 15 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 C -0.12 -4.81 9.60 22.35 0.21 -4.60 16 19 C 0.07 2.33 6.72 22.57 0.15 2.48 16 20 O -0.50 -15.68 13.29 -79.63 -1.06 -16.74 16 21 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 22 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 23 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 24 H 0.16 3.61 6.30 -2.91 -0.02 3.59 16 25 H 0.13 4.42 6.66 -2.91 -0.02 4.40 16 26 H 0.31 12.79 9.06 -89.70 -0.81 11.98 16 27 H 0.32 13.97 7.33 -89.69 -0.66 13.31 16 28 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.12 4.92 8.03 -2.91 -0.02 4.90 16 30 H 0.40 8.39 9.06 -74.06 -0.67 7.72 16 Total: -1.00 -67.73 262.50 0.75 -66.97 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.95 Total: 29.83 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 2.74 Total: -25.71 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -1.19 Total: -90.54 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -1.88 Total: -26.78 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -67.73 0.75 -66.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095672741.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.874 kcal (2) G-P(sol) polarization free energy of solvation -67.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds