Wall clock time and date at job start Mon Mar 30 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35986 * 116.99684 * 2 1 4 4 C 1.38718 * 120.00222 * 0.25076 * 3 2 1 5 5 C 1.38106 * 119.99635 * 180.29348 * 4 3 2 6 6 C 1.38721 * 120.00409 * 359.70593 * 5 4 3 7 7 O 1.35982 * 120.00287 * 179.97438 * 6 5 4 8 8 C 1.38681 * 119.99662 * 0.02562 * 6 5 4 9 9 C 1.38158 * 119.99989 * 359.97438 * 8 6 5 10 10 C 1.50699 * 119.99561 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.46916 * 145.00331 * 10 9 8 12 12 N 1.46899 * 109.47571 * 25.00132 * 10 9 8 13 13 C 1.50706 * 109.46824 * 264.99664 * 10 9 8 14 14 H 1.07999 * 120.00193 * 0.02562 * 13 10 9 15 15 C 1.37879 * 119.99398 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99350 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 120.00608 * 0.02562 * 15 13 10 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 H 1.08996 * 109.47319 * 300.00020 * 1 2 3 22 22 H 1.09007 * 109.47195 * 60.00177 * 1 2 3 23 23 H 1.09003 * 109.47300 * 179.97438 * 1 2 3 24 24 H 1.08002 * 120.00205 * 0.02912 * 4 3 2 25 25 H 1.07997 * 119.99885 * 179.73136 * 5 4 3 26 26 H 0.96699 * 113.99981 * 270.02750 * 7 6 5 27 27 H 1.08001 * 119.99783 * 179.97438 * 8 6 5 28 28 H 1.00895 * 110.99738 * 176.04461 * 12 10 9 29 29 H 1.00899 * 110.99492 * 299.99890 * 12 10 9 30 30 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3750 0.0053 5 6 1.9178 3.6056 -0.0009 6 6 3.3031 3.6782 -0.0061 7 8 3.9204 4.8898 -0.0127 8 6 4.0584 2.5151 -0.0057 9 6 3.4312 1.2842 0.0004 10 6 4.2520 0.0203 0.0002 11 1 3.7465 -0.7413 0.5939 12 7 5.5740 0.2949 0.5790 13 6 4.4154 -0.4723 -1.4147 14 1 3.9698 0.0753 -2.2320 15 6 5.1338 -1.6220 -1.6656 16 7 5.2768 -2.0516 -2.9003 17 14 5.9039 -2.5696 -0.2519 18 1 7.2775 -2.0619 -0.0058 19 1 5.0822 -2.3876 0.9716 20 1 5.9640 -4.0125 -0.5977 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 0.2123 2.3185 0.0098 25 1 1.3296 4.5113 -0.0012 26 1 4.0954 5.2373 -0.8980 27 1 5.1369 2.5717 -0.0102 28 1 6.1204 -0.5504 0.6494 29 1 6.0630 0.9983 0.0459 30 1 5.7826 -2.8603 -3.0770 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104677977.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:32 Heat of formation + Delta-G solvation = -45.706990 kcal Electronic energy + Delta-G solvation = -15330.264875 eV Core-core repulsion = 12705.503527 eV Total energy + Delta-G solvation = -2624.761348 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.86041 -37.92361 -36.03635 -34.44252 -31.90524 -29.87494 -28.82802 -26.68020 -26.08192 -23.14373 -21.60531 -20.17396 -17.66682 -17.53591 -17.00547 -16.12996 -15.25495 -15.04806 -14.72378 -14.21407 -13.94671 -13.56982 -13.00977 -12.67397 -12.41240 -12.11834 -11.70301 -11.36874 -11.13466 -10.87799 -10.78177 -10.42391 -10.32209 -9.85136 -9.44971 -8.73858 -8.34511 -7.68776 -7.27598 -6.18607 -4.20526 1.81415 1.86357 3.16496 3.30992 3.33400 3.80431 4.14954 4.27949 4.68493 5.08238 5.19078 5.29071 5.40667 5.45295 5.60789 5.74269 5.90980 6.10726 6.16081 6.41645 6.55133 6.72002 6.93673 7.14753 7.27237 7.50333 7.86760 8.08559 8.09926 8.30905 8.52741 8.87616 9.40842 10.94259 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.027069 B = 0.010482 C = 0.008565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.149126 B = 2670.557536 C = 3268.304057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.297 6.297 3 C 0.121 3.879 4 C -0.199 4.199 5 C -0.128 4.128 6 C 0.058 3.942 7 O -0.501 6.501 8 C -0.098 4.098 9 C -0.037 4.037 10 C 0.213 3.787 11 H 0.058 0.942 12 N -0.850 5.850 13 C -0.534 4.534 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.892 5.892 17 Si 0.872 3.128 18 H -0.276 1.276 19 H -0.258 1.258 20 H -0.291 1.291 21 H 0.047 0.953 22 H 0.050 0.950 23 H 0.095 0.905 24 H 0.124 0.876 25 H 0.120 0.880 26 H 0.380 0.620 27 H 0.134 0.866 28 H 0.318 0.682 29 H 0.330 0.670 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.708 7.651 4.841 11.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.210 6.210 3 C 0.075 3.925 4 C -0.218 4.218 5 C -0.147 4.147 6 C 0.014 3.986 7 O -0.310 6.310 8 C -0.116 4.116 9 C -0.038 4.038 10 C 0.104 3.896 11 H 0.076 0.924 12 N -0.384 5.384 13 C -0.574 4.574 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.530 5.530 17 Si 0.701 3.299 18 H -0.202 1.202 19 H -0.183 1.183 20 H -0.218 1.218 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.113 0.887 24 H 0.142 0.858 25 H 0.138 0.862 26 H 0.234 0.766 27 H 0.152 0.848 28 H 0.134 0.866 29 H 0.143 0.857 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.988 7.466 5.999 11.856 hybrid contribution 0.539 -0.721 -0.948 1.307 sum -6.449 6.745 5.051 10.611 Atomic orbital electron populations 1.22979 0.79864 1.03432 1.00496 1.86270 1.19899 1.26398 1.88389 1.18846 0.91897 0.84050 0.97678 1.20939 0.99429 0.91891 1.09576 1.20922 0.93745 0.97175 1.02867 1.18311 0.90175 0.84581 1.05579 1.84841 1.80217 1.33042 1.32917 1.21035 1.00581 0.90271 0.99750 1.19336 0.90261 0.96084 0.98140 1.18325 0.86309 0.90072 0.94867 0.92390 1.59768 1.06591 1.13747 1.58279 1.21533 1.34018 1.09941 0.91878 0.90798 1.25005 0.95971 0.96575 0.95523 1.69897 1.40854 1.23371 1.18866 0.87016 0.80017 0.79406 0.83462 1.20212 1.18286 1.21780 0.93397 0.93125 0.88676 0.85781 0.86185 0.76595 0.84818 0.86575 0.85743 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.38 16 2 O -0.30 -5.92 9.63 -19.70 -0.19 -6.11 16 3 C 0.12 2.44 6.66 -39.24 -0.26 2.18 16 4 C -0.20 -3.33 9.03 -39.45 -0.36 -3.68 16 5 C -0.13 -2.07 9.98 -39.45 -0.39 -2.46 16 6 C 0.06 1.00 6.70 -39.24 -0.26 0.74 16 7 O -0.50 -7.54 13.51 -19.68 -0.27 -7.80 16 8 C -0.10 -1.92 9.20 -39.45 -0.36 -2.28 16 9 C -0.04 -0.81 5.00 -104.49 -0.52 -1.33 16 10 C 0.21 5.22 2.19 -70.01 -0.15 5.06 16 11 H 0.06 1.51 6.75 -51.93 -0.35 1.16 16 12 N -0.85 -19.13 8.75 -6.65 -0.06 -19.19 16 13 C -0.53 -14.97 9.29 -34.44 -0.32 -15.29 16 14 H 0.07 2.28 7.98 -52.49 -0.42 1.87 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 17 Si 0.87 21.24 24.61 -169.99 -4.18 17.05 16 18 H -0.28 -6.40 7.01 56.52 0.40 -6.00 16 19 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 22 H 0.05 0.63 7.67 -51.92 -0.40 0.23 16 23 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.12 1.68 6.29 -52.49 -0.33 1.35 16 25 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 26 H 0.38 3.89 9.06 45.56 0.41 4.30 16 27 H 0.13 2.53 6.29 -52.49 -0.33 2.20 16 28 H 0.32 7.26 4.30 -39.29 -0.17 7.10 16 29 H 0.33 6.97 7.20 -39.29 -0.28 6.68 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 252.17 15.07 3.80 3.80 Total: -1.00 -32.43 252.17 -4.15 -36.58 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -2.28 Total: 15.56 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.74 Total: -13.73 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.72 Total: -45.34 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.46 Total: -13.91 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.18 Total: 17.05 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.43 -4.15 -36.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104677977.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.132 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds