Wall clock time and date at job start Mon Mar 30 2020 02:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35980 * 116.99735 * 2 1 4 4 C 1.38719 * 120.00415 * 359.97438 * 3 2 1 5 5 C 1.38104 * 120.00169 * 180.02562 * 4 3 2 6 6 C 1.38719 * 120.00180 * 0.02562 * 5 4 3 7 7 O 1.35983 * 120.00233 * 180.02562 * 6 5 4 8 8 C 1.38679 * 119.99826 * 359.72236 * 6 5 4 9 9 C 1.38147 * 119.99801 * 0.54962 * 8 6 5 10 10 C 1.50700 * 120.00047 * 179.72055 * 9 8 6 11 11 H 1.08994 * 109.47551 * 219.72651 * 10 9 8 12 12 N 1.46900 * 109.47395 * 339.73113 * 10 9 8 13 13 C 1.50702 * 109.46869 * 99.72705 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 10 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 10 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 H 1.09002 * 109.46702 * 59.99895 * 1 2 3 22 22 H 1.08996 * 109.46506 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46789 * 299.99672 * 1 2 3 24 24 H 1.07998 * 119.99506 * 0.04666 * 4 3 2 25 25 H 1.08000 * 120.00387 * 180.02562 * 5 4 3 26 26 H 0.96698 * 114.00191 * 90.00068 * 7 6 5 27 27 H 1.08003 * 119.99986 * 180.30190 * 8 6 5 28 28 H 1.00907 * 110.99792 * 296.04461 * 12 10 9 29 29 H 1.00903 * 111.00086 * 59.99217 * 12 10 9 30 30 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 -0.0005 5 6 1.9178 3.6056 -0.0011 6 6 3.3031 3.6782 -0.0016 7 8 3.9205 4.8898 -0.0016 8 6 4.0584 2.5152 0.0042 9 6 3.4313 1.2843 -0.0009 10 6 4.2520 0.0204 -0.0010 11 1 3.7895 -0.7133 -0.6611 12 7 5.6101 0.3184 -0.4752 13 6 4.3193 -0.5349 1.3984 14 1 3.8175 -0.0240 2.2068 15 6 5.0162 -1.6987 1.6456 16 7 5.0703 -2.1862 2.8658 17 14 5.8836 -2.5828 0.2472 18 1 7.2720 -2.0707 0.1235 19 1 5.9168 -4.0406 0.5283 20 1 5.1515 -2.3399 -1.0218 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2124 2.3185 -0.0002 25 1 1.3297 4.5114 -0.0011 26 1 4.0994 5.2401 0.8818 27 1 5.1370 2.5717 0.0087 28 1 5.5975 0.6315 -1.4344 29 1 6.0605 0.9967 0.1207 30 1 5.5609 -3.0047 3.0397 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104682660.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:34 Heat of formation + Delta-G solvation = -48.849256 kcal Electronic energy + Delta-G solvation = -15335.527887 eV Core-core repulsion = 12710.630280 eV Total energy + Delta-G solvation = -2624.897607 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.96064 -38.00697 -36.11725 -34.35406 -31.85072 -29.72271 -28.93789 -26.69994 -26.27207 -23.02991 -21.64571 -20.12146 -17.68293 -17.61600 -16.85729 -16.09924 -15.27209 -14.96726 -14.71922 -14.13226 -13.91137 -13.62719 -13.41020 -12.69475 -12.34235 -12.07918 -11.85717 -11.31683 -11.11800 -10.70176 -10.61990 -10.47481 -10.00031 -9.73384 -9.28786 -8.48214 -8.36466 -7.69774 -7.46266 -5.95127 -4.03682 1.68421 1.75224 3.61814 3.65383 3.74938 3.79265 4.03307 4.58403 4.70767 5.11610 5.15659 5.30499 5.36057 5.42667 5.61428 5.73360 5.86581 5.96267 5.99866 6.37363 6.42770 6.66415 6.78615 7.00841 7.12138 7.67328 7.79346 7.99002 8.16993 8.35262 8.71467 9.03919 9.68088 11.14559 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.010528 C = 0.008564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.889442 B = 2658.959018 C = 3268.556562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.292 6.292 3 C 0.128 3.872 4 C -0.199 4.199 5 C -0.127 4.127 6 C 0.061 3.939 7 O -0.502 6.502 8 C -0.118 4.118 9 C -0.080 4.080 10 C 0.223 3.777 11 H 0.059 0.941 12 N -0.842 5.842 13 C -0.504 4.504 14 H 0.069 0.931 15 C 0.081 3.919 16 N -0.902 5.902 17 Si 0.937 3.063 18 H -0.281 1.281 19 H -0.319 1.319 20 H -0.274 1.274 21 H 0.047 0.953 22 H 0.096 0.904 23 H 0.050 0.950 24 H 0.125 0.875 25 H 0.121 0.879 26 H 0.381 0.619 27 H 0.130 0.870 28 H 0.312 0.688 29 H 0.334 0.666 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.975 9.312 -5.975 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.204 6.204 3 C 0.081 3.919 4 C -0.218 4.218 5 C -0.146 4.146 6 C 0.016 3.984 7 O -0.311 6.311 8 C -0.137 4.137 9 C -0.083 4.083 10 C 0.113 3.887 11 H 0.076 0.924 12 N -0.372 5.372 13 C -0.543 4.543 14 H 0.087 0.913 15 C -0.123 4.123 16 N -0.540 5.540 17 Si 0.769 3.231 18 H -0.207 1.207 19 H -0.249 1.249 20 H -0.199 1.199 21 H 0.065 0.935 22 H 0.115 0.885 23 H 0.069 0.931 24 H 0.143 0.857 25 H 0.139 0.861 26 H 0.236 0.764 27 H 0.147 0.853 28 H 0.123 0.877 29 H 0.149 0.851 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.701 8.142 -6.341 12.304 hybrid contribution -0.191 0.835 -0.086 0.861 sum -6.891 8.977 -6.426 13.014 Atomic orbital electron populations 1.22995 0.79832 1.03574 1.00427 1.86308 1.19874 1.26147 1.88097 1.18883 0.92013 0.84068 0.96902 1.21027 0.99586 0.91994 1.09175 1.20941 0.93729 0.97261 1.02681 1.18270 0.90212 0.84508 1.05369 1.84833 1.80156 1.32993 1.33130 1.21060 1.00356 0.90701 1.01562 1.20585 0.91605 0.97767 0.98383 1.18587 0.83341 0.88564 0.98164 0.92384 1.59368 1.21695 1.51039 1.05101 1.20628 1.33771 1.08814 0.91062 0.91328 1.24997 0.94881 0.96469 0.95935 1.69956 1.41930 1.21624 1.20456 0.85865 0.80422 0.74740 0.82085 1.20730 1.24903 1.19930 0.93475 0.88525 0.93098 0.85724 0.86111 0.76443 0.85257 0.87650 0.85129 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.29 -5.76 9.73 -19.68 -0.19 -5.95 16 3 C 0.13 2.50 6.65 -39.24 -0.26 2.24 16 4 C -0.20 -3.23 9.03 -39.45 -0.36 -3.59 16 5 C -0.13 -1.98 9.98 -39.45 -0.39 -2.38 16 6 C 0.06 1.01 6.70 -39.24 -0.26 0.74 16 7 O -0.50 -7.22 13.50 -19.69 -0.27 -7.49 16 8 C -0.12 -2.18 9.19 -39.45 -0.36 -2.54 16 9 C -0.08 -1.69 5.02 -104.49 -0.52 -2.21 16 10 C 0.22 5.30 1.99 -70.02 -0.14 5.16 16 11 H 0.06 1.48 6.90 -51.93 -0.36 1.12 16 12 N -0.84 -17.95 6.26 -6.65 -0.04 -17.99 16 13 C -0.50 -14.33 9.28 -34.44 -0.32 -14.65 16 14 H 0.07 2.15 7.98 -52.49 -0.42 1.73 16 15 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 16 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 17 Si 0.94 24.31 26.04 -169.99 -4.43 19.88 16 18 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.32 -8.36 7.11 56.52 0.40 -7.96 16 20 H -0.27 -6.95 6.54 56.52 0.37 -6.58 16 21 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 22 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.05 0.63 7.66 -51.93 -0.40 0.24 16 24 H 0.12 1.65 6.29 -52.49 -0.33 1.32 16 25 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 26 H 0.38 3.73 9.06 45.56 0.41 4.14 16 27 H 0.13 2.24 6.25 -52.48 -0.33 1.92 16 28 H 0.31 5.77 9.06 -39.29 -0.36 5.41 16 29 H 0.33 6.76 7.28 -39.29 -0.29 6.47 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 256.02 15.07 3.86 3.86 Total: -1.00 -33.76 256.02 -4.49 -38.25 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -2.47 Total: 10.32 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -1.73 Total: -13.58 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.73 Total: -45.29 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.46 Total: -13.44 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -4.43 Total: 19.88 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.76 -4.49 -38.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104682660.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.598 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds