Wall clock time and date at job start Mon Mar 30 2020 02:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35980 * 116.99735 * 2 1 4 4 C 1.38719 * 120.00415 * 359.97438 * 3 2 1 5 5 C 1.38104 * 120.00169 * 180.02562 * 4 3 2 6 6 C 1.38719 * 120.00180 * 0.02562 * 5 4 3 7 7 O 1.35983 * 120.00233 * 180.02562 * 6 5 4 8 8 C 1.38679 * 119.99826 * 359.72236 * 6 5 4 9 9 C 1.38147 * 119.99801 * 0.54962 * 8 6 5 10 10 C 1.50700 * 120.00047 * 179.72055 * 9 8 6 11 11 H 1.08994 * 109.47551 * 219.72651 * 10 9 8 12 12 N 1.46900 * 109.47395 * 339.73113 * 10 9 8 13 13 C 1.50702 * 109.46869 * 99.72705 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 10 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 10 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 H 1.09002 * 109.46702 * 59.99895 * 1 2 3 22 22 H 1.08996 * 109.46506 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46789 * 299.99672 * 1 2 3 24 24 H 1.07998 * 119.99506 * 0.04666 * 4 3 2 25 25 H 1.08000 * 120.00387 * 180.02562 * 5 4 3 26 26 H 0.96698 * 114.00191 * 90.00068 * 7 6 5 27 27 H 1.08003 * 119.99986 * 180.30190 * 8 6 5 28 28 H 1.00907 * 110.99792 * 296.04461 * 12 10 9 29 29 H 1.00903 * 111.00086 * 59.99217 * 12 10 9 30 30 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 -0.0005 5 6 1.9178 3.6056 -0.0011 6 6 3.3031 3.6782 -0.0016 7 8 3.9205 4.8898 -0.0016 8 6 4.0584 2.5152 0.0042 9 6 3.4313 1.2843 -0.0009 10 6 4.2520 0.0204 -0.0010 11 1 3.7895 -0.7133 -0.6611 12 7 5.6101 0.3184 -0.4752 13 6 4.3193 -0.5349 1.3984 14 1 3.8175 -0.0240 2.2068 15 6 5.0162 -1.6987 1.6456 16 7 5.0703 -2.1862 2.8658 17 14 5.8836 -2.5828 0.2472 18 1 7.2720 -2.0707 0.1235 19 1 5.9168 -4.0406 0.5283 20 1 5.1515 -2.3399 -1.0218 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2124 2.3185 -0.0002 25 1 1.3297 4.5114 -0.0011 26 1 4.0994 5.2401 0.8818 27 1 5.1370 2.5717 0.0087 28 1 5.5975 0.6315 -1.4344 29 1 6.0605 0.9967 0.1207 30 1 5.5609 -3.0047 3.0397 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104682660.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:34 Heat of formation + Delta-G solvation = -76.898914 kcal Electronic energy + Delta-G solvation = -15336.744211 eV Core-core repulsion = 12710.630280 eV Total energy + Delta-G solvation = -2626.113931 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.30382 -39.25605 -37.60956 -35.89853 -33.98395 -31.17463 -30.26107 -28.29227 -27.81720 -24.72084 -22.94108 -21.74718 -19.10645 -18.93327 -18.84030 -17.47208 -16.71883 -16.54184 -16.15833 -15.88570 -15.37445 -15.07524 -14.86540 -14.41000 -13.94817 -13.42934 -13.42120 -12.88003 -12.65969 -12.48528 -12.25153 -11.82857 -11.72696 -11.46614 -11.24601 -10.72873 -9.79355 -9.42256 -8.83913 -8.22298 -6.33089 0.35280 0.41472 1.50520 1.57576 1.71544 2.51633 2.54464 2.72172 3.11902 3.39519 3.88070 3.92296 4.11187 4.32192 4.36856 4.43159 4.51908 4.71203 4.73286 4.90612 5.04834 5.26615 5.34820 5.45981 5.67375 5.76513 6.14097 6.42979 6.61093 6.76563 6.91210 6.96357 7.41625 8.91197 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.010528 C = 0.008564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.889442 B = 2658.959018 C = 3268.556562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.106 3.894 4 C -0.191 4.191 5 C -0.118 4.118 6 C 0.063 3.937 7 O -0.503 6.503 8 C -0.125 4.125 9 C -0.119 4.119 10 C 0.235 3.765 11 H 0.038 0.962 12 N -0.844 5.844 13 C -0.498 4.498 14 H 0.025 0.975 15 C 0.025 3.975 16 N -0.949 5.949 17 Si 1.000 3.000 18 H -0.274 1.274 19 H -0.323 1.323 20 H -0.266 1.266 21 H 0.073 0.927 22 H 0.108 0.892 23 H 0.061 0.939 24 H 0.158 0.842 25 H 0.156 0.844 26 H 0.404 0.596 27 H 0.133 0.867 28 H 0.333 0.667 29 H 0.341 0.659 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 11.129 -7.474 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.060 3.940 4 C -0.209 4.209 5 C -0.136 4.136 6 C 0.019 3.981 7 O -0.315 6.315 8 C -0.144 4.144 9 C -0.122 4.122 10 C 0.125 3.875 11 H 0.056 0.944 12 N -0.376 5.376 13 C -0.536 4.536 14 H 0.043 0.957 15 C -0.173 4.173 16 N -0.590 5.590 17 Si 0.830 3.170 18 H -0.200 1.200 19 H -0.253 1.253 20 H -0.190 1.190 21 H 0.091 0.909 22 H 0.127 0.873 23 H 0.080 0.920 24 H 0.175 0.825 25 H 0.174 0.826 26 H 0.262 0.738 27 H 0.151 0.849 28 H 0.146 0.854 29 H 0.156 0.844 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.478 9.993 -7.844 14.742 hybrid contribution -0.054 0.427 0.417 0.599 sum -7.532 10.420 -7.427 14.849 Atomic orbital electron populations 1.23315 0.77111 1.05111 1.02134 1.86236 1.22942 1.27006 1.88386 1.19132 0.92000 0.85188 0.97708 1.21354 1.01088 0.90983 1.07513 1.21358 0.93555 0.98289 1.00395 1.18310 0.90743 0.84605 1.04443 1.84778 1.79951 1.31687 1.35129 1.21148 1.00792 0.90763 1.01670 1.20384 0.92461 0.97212 1.02120 1.18092 0.84840 0.89859 0.94714 0.94392 1.59046 1.20332 1.51670 1.06506 1.20817 1.32029 1.08258 0.92498 0.95692 1.25818 0.95987 0.97508 0.97972 1.70081 1.43837 1.22529 1.22506 0.84856 0.79472 0.73262 0.79421 1.20016 1.25303 1.19050 0.90896 0.87331 0.92027 0.82498 0.82601 0.73842 0.84892 0.85387 0.84394 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.57 16 2 O -0.33 -13.10 9.73 -93.33 -0.91 -14.01 16 3 C 0.11 4.07 6.65 22.49 0.15 4.22 16 4 C -0.19 -5.65 9.03 22.35 0.20 -5.45 16 5 C -0.12 -3.22 9.98 22.35 0.22 -3.00 16 6 C 0.06 1.93 6.70 22.49 0.15 2.08 16 7 O -0.50 -12.74 13.50 -93.36 -1.26 -14.00 16 8 C -0.12 -4.47 9.19 22.35 0.21 -4.27 16 9 C -0.12 -4.97 5.02 -19.78 -0.10 -5.07 16 10 C 0.23 11.30 1.99 43.42 0.09 11.38 16 11 H 0.04 1.97 6.90 -2.39 -0.02 1.95 16 12 N -0.84 -35.34 6.26 -174.96 -1.10 -36.43 16 13 C -0.50 -29.18 9.28 25.60 0.24 -28.94 16 14 H 0.02 1.64 7.98 -2.91 -0.02 1.61 16 15 C 0.03 1.54 5.47 84.66 0.46 2.00 16 16 N -0.95 -60.99 13.96 21.45 0.30 -60.69 16 17 Si 1.00 50.85 26.04 68.60 1.79 52.63 16 18 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 19 H -0.32 -16.46 7.11 99.48 0.71 -15.75 16 20 H -0.27 -13.01 6.54 99.48 0.65 -12.35 16 21 H 0.07 1.47 7.66 -2.39 -0.02 1.45 16 22 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.06 1.42 7.66 -2.39 -0.02 1.40 16 24 H 0.16 3.52 6.29 -2.91 -0.02 3.50 16 25 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 26 H 0.40 6.47 9.06 -74.06 -0.67 5.79 16 27 H 0.13 4.48 6.25 -2.91 -0.02 4.46 16 28 H 0.33 11.82 9.06 -89.69 -0.81 11.01 16 29 H 0.34 13.58 7.28 -89.69 -0.65 12.93 16 30 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -74.61 256.02 0.55 -74.05 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -1.00 Total: 23.92 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 2.73 Total: -25.48 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -0.80 Total: -97.12 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -2.17 Total: -28.01 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 1.79 Total: 52.63 kcal Total: -74.61 0.55 -74.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104682660.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.848 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds